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Large-scale gene relocations following an ancient genome triplication associated with the diversification of core eudicots

STEM and diversification

Feltus FA, Ficklin SP, Paterson AH, Wang Y.
GSID: xzvu366TAIAJ
Y Wang, SP Ficklin, X Wang, FA Feltus, AH Paterson - PloS one, 2016 - journals.plos.org

… triplication (γ) event that occurred in the stem lineage of core eudicots. We name these … relocations following the γ event were associated with the diversification of core eudicots. …

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Wang, Y., Ficklin, S. P., Wang, X., Feltus, F. A., & Paterson, A. H. (2016). Large-scale gene relocations following an ancient genome triplication associated with the diversification of core eudicots. PloS one, 11(5), e0155637.
Wang, Yupeng, et al. "Large-scale gene relocations following an ancient genome triplication associated with the diversification of core eudicots." PloS one 11.5 (2016): e0155637.
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Physicians and pharmaceutical companies.

CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne

Patterson AH.
PMID: 1544042
CMAJ. 1992 Feb 01;146(3):328; author reply 332.
Free PMC Article

No abstract available.

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Patterson AH. Physicians and pharmaceutical companies. CMAJ. 1992;146(3):328; author reply 332
Patterson, A. H. (1992). Physicians and pharmaceutical companies. CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne, 146(3), 328; author reply 332.
Patterson, A H. "Physicians and pharmaceutical companies." CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne vol. 146,3 (1992): 328; author reply 332.
Patterson AH. Physicians and pharmaceutical companies. CMAJ. 1992 Feb 01;146(3):328; author reply 332. PMID: 1544042; PMCID: PMC1488264.
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Sonographer registration in the United Kingdom - a review of the current situation.

Ultrasound (Leeds, England)

Thomson N, Paterson A.
PMID: 27433193
Ultrasound. 2014 Feb;22(1):52-6. doi: 10.1177/1742271X13517381. Epub 2013 Dec 20.

There is no statutory registration as a sonographer available in the United Kingdom (UK) and the titles of 'sonographer' and 'ultrasonographer' are not legally protected. The majority of sonographers are statutorily registered with the Health and Care Professions Council...

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Thomson N, Paterson A. Sonographer registration in the United Kingdom - a review of the current situation. Ultrasound. 2013;22(1):52-6doi: 10.1177/1742271X13517381.
Thomson, N., & Paterson, A. (2014). Sonographer registration in the United Kingdom - a review of the current situation. Ultrasound (Leeds, England), 22(1), 52-6. https://doi.org/10.1177/1742271X13517381
Thomson, Nigel, and Paterson, Audrey. "Sonographer registration in the United Kingdom - a review of the current situation." Ultrasound (Leeds, England) vol. 22,1 (2014): 52-6. doi: https://doi.org/10.1177/1742271X13517381
Thomson N, Paterson A. Sonographer registration in the United Kingdom - a review of the current situation. Ultrasound. 2014 Feb;22(1):52-6. doi: 10.1177/1742271X13517381. Epub 2013 Dec 20. PMID: 27433193; PMCID: PMC4760522.
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Visualising coordination chemistry: fluorescence X-ray absorption near edge structure tomography.

Chemical communications (Cambridge, England)

James SA, Burke R, Howard DL, Spiers KM, Paterson DJ, Murphy S, Ramm G, Kirkham R, Ryan CG, de Jonge MD.
PMID: 27722440
Chem Commun (Camb). 2016 Sep 27;52(79):11834-11837. doi: 10.1039/c6cc06747f.

Coordination chemistry underlies the structure/function of biological metal complexes. Contextualising this chemical information within an organism's physiology is critical for enhancing the understanding of bioinorganic chemistry but few high-fidelity probes are available. Here we develop fluorescence X-ray absorption near-edge...

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James SA, Burke R, Howard DL, et al. Visualising coordination chemistry: fluorescence X-ray absorption near edge structure tomography. Chem Commun (Camb). 2016;52(79):11834-11837doi: 10.1039/c6cc06747f.
James, S. A., Burke, R., Howard, D. L., Spiers, K. M., Paterson, D. J., Murphy, S., Ramm, G., Kirkham, R., Ryan, C. G., & de Jonge, M. D. (2016). Visualising coordination chemistry: fluorescence X-ray absorption near edge structure tomography. Chemical communications (Cambridge, England), 52(79), 11834-11837. https://doi.org/10.1039/c6cc06747f
James, S A, et al. "Visualising coordination chemistry: fluorescence X-ray absorption near edge structure tomography." Chemical communications (Cambridge, England) vol. 52,79 (2016): 11834-11837. doi: https://doi.org/10.1039/c6cc06747f
James SA, Burke R, Howard DL, Spiers KM, Paterson DJ, Murphy S, Ramm G, Kirkham R, Ryan CG, de Jonge MD. Visualising coordination chemistry: fluorescence X-ray absorption near edge structure tomography. Chem Commun (Camb). 2016 Sep 27;52(79):11834-11837. doi: 10.1039/c6cc06747f. PMID: 27722440.
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Introducing pharmacogenetic testing with clinical decision support into primary care: a feasibility study.

CMAJ open

Dawes M, Aloise MN, Ang JS, Cullis P, Dawes D, Fraser R, Liknaitzky G, Paterson A, Stanley P, Suarez-Gonzalez A, Katzov-Eckert H.
PMID: 27730116
CMAJ Open. 2016 Sep 21;4(3):E528-E534. doi: 10.9778/cmajo.20150070. eCollection 2016.

BACKGROUND: Inappropriate prescribing increases patient illness and death owing to adverse drug events. The inclusion of genetic information into primary care medication practices is one solution. Our aim was to assess the ability to obtain and genotype saliva samples...

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Dawes M, Aloise MN, Ang JS, et al. Introducing pharmacogenetic testing with clinical decision support into primary care: a feasibility study. CMAJ Open. 2016;4(3):E528-E534doi: 10.9778/cmajo.20150070.
Dawes, M., Aloise, M. N., Ang, J. S., Cullis, P., Dawes, D., Fraser, R., Liknaitzky, G., Paterson, A., Stanley, P., Suarez-Gonzalez, A., & Katzov-Eckert, H. (2016). Introducing pharmacogenetic testing with clinical decision support into primary care: a feasibility study. CMAJ open, 4(3), E528-E534. https://doi.org/10.9778/cmajo.20150070
Dawes, Martin, et al. "Introducing pharmacogenetic testing with clinical decision support into primary care: a feasibility study." CMAJ open vol. 4,3 (2016): E528-E534. doi: https://doi.org/10.9778/cmajo.20150070
Dawes M, Aloise MN, Ang JS, Cullis P, Dawes D, Fraser R, Liknaitzky G, Paterson A, Stanley P, Suarez-Gonzalez A, Katzov-Eckert H. Introducing pharmacogenetic testing with clinical decision support into primary care: a feasibility study. CMAJ Open. 2016 Sep 21;4(3):E528-E534. doi: 10.9778/cmajo.20150070. eCollection 2016. PMID: 27730116; PMCID: PMC5047800.
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A global database of lake surface temperatures collected by in situ and satellite methods from 1985-2009.

Scientific data

Sharma S, Gray DK, Read JS, O'Reilly CM, Schneider P, Qudrat A, Gries C, Stefanoff S, Hampton SE, Hook S, Lenters JD, Livingstone DM, McIntyre PB, Adrian R, Allan MG, Anneville O, Arvola L, Austin J, Bailey J, Baron JS, Brookes J, Chen Y, Daly R, Dokulil M, Dong B, Ewing K, de Eyto E, Hamilton D, Havens K, Haydon S, Hetzenauer H, Heneberry J, Hetherington AL, Higgins SN, Hixson E, Izmest'eva LR, Jones BM, Kangur K, Kasprzak P, Köster O, Kraemer BM, Kumagai M, Kuusisto E, Leshkevich G, May L, MacIntyre S, Müller-Navarra D, Naumenko M, Noges P, Noges T, Niederhauser P, North RP, Paterson AM, Plisnier PD, Rigosi A, Rimmer A, Rogora M, Rudstam L, Rusak JA, Salmaso N, Samal NR, Schindler DE, Schladow G, Schmidt SR, Schultz T, Silow EA, Straile D, Teubner K, Verburg P, Voutilainen A, Watkinson A, Weyhenmeyer GA, Williamson CE, Woo KH.
PMID: 25977814
Sci Data. 2015 Mar 17;2:150008. doi: 10.1038/sdata.2015.8. eCollection 2015.

Global environmental change has influenced lake surface temperatures, a key driver of ecosystem structure and function. Recent studies have suggested significant warming of water temperatures in individual lakes across many different regions around the world. However, the spatial and...

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Sharma S, Gray DK, Read JS, et al. A global database of lake surface temperatures collected by in situ and satellite methods from 1985-2009. Sci Data. 2015;2:150008doi: 10.1038/sdata.2015.8.
Sharma, S., Gray, D. K., Read, J. S., O'Reilly, C. M., Schneider, P., Qudrat, A., Gries, C., Stefanoff, S., Hampton, S. E., Hook, S., Lenters, J. D., Livingstone, D. M., McIntyre, P. B., Adrian, R., Allan, M. G., Anneville, O., Arvola, L., Austin, J., Bailey, J., Baron, J. S., Brookes, J., Chen, Y., Daly, R., Dokulil, M., Dong, B., Ewing, K., de Eyto, E., Hamilton, D., Havens, K., Haydon, S., Hetzenauer, H., Heneberry, J., Hetherington, A. L., Higgins, S. N., Hixson, E., Izmest'eva, L. R., Jones, B. M., Kangur, K., Kasprzak, P., Köster, O., Kraemer, B. M., Kumagai, M., Kuusisto, E., Leshkevich, G., May, L., MacIntyre, S., Müller-Navarra, D., Naumenko, M., Noges, P., Noges, T., Niederhauser, P., North, R. P., Paterson, A. M., Plisnier, P. D., Rigosi, A., Rimmer, A., Rogora, M., Rudstam, L., Rusak, J. A., Salmaso, N., Samal, N. R., Schindler, D. E., Schladow, G., Schmidt, S. R., Schultz, T., Silow, E. A., Straile, D., Teubner, K., Verburg, P., Voutilainen, A., Watkinson, A., Weyhenmeyer, G. A., Williamson, C. E., & Woo, K. H. (2015). A global database of lake surface temperatures collected by in situ and satellite methods from 1985-2009. Scientific data, 2150008. https://doi.org/10.1038/sdata.2015.8
Sharma, Sapna, et al. "A global database of lake surface temperatures collected by in situ and satellite methods from 1985-2009." Scientific data vol. 2 (2015): 150008. doi: https://doi.org/10.1038/sdata.2015.8
Sharma S, Gray DK, Read JS, O'Reilly CM, Schneider P, Qudrat A, Gries C, Stefanoff S, Hampton SE, Hook S, Lenters JD, Livingstone DM, McIntyre PB, Adrian R, Allan MG, Anneville O, Arvola L, Austin J, Bailey J, Baron JS, Brookes J, Chen Y, Daly R, Dokulil M, Dong B, Ewing K, de Eyto E, Hamilton D, Havens K, Haydon S, Hetzenauer H, Heneberry J, Hetherington AL, Higgins SN, Hixson E, Izmest'eva LR, Jones BM, Kangur K, Kasprzak P, Köster O, Kraemer BM, Kumagai M, Kuusisto E, Leshkevich G, May L, MacIntyre S, Müller-Navarra D, Naumenko M, Noges P, Noges T, Niederhauser P, North RP, Paterson AM, Plisnier PD, Rigosi A, Rimmer A, Rogora M, Rudstam L, Rusak JA, Salmaso N, Samal NR, Schindler DE, Schladow G, Schmidt SR, Schultz T, Silow EA, Straile D, Teubner K, Verburg P, Voutilainen A, Watkinson A, Weyhenmeyer GA, Williamson CE, Woo KH. A global database of lake surface temperatures collected by in situ and satellite methods from 1985-2009. Sci Data. 2015 Mar 17;2:150008. doi: 10.1038/sdata.2015.8. eCollection 2015. PMID: 25977814; PMCID: PMC4423389.
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Using a Bayesian latent variable approach to detect pleiotropy in the Genetic Analysis Workshop 18 data.

BMC proceedings

Xu L, Craiu RV, Derkach A, Paterson AD, Sun L.
PMID: 25519405
BMC Proc. 2014 Jun 17;8:S77. doi: 10.1186/1753-6561-8-S1-S77. eCollection 2014.

Pleiotropy, which occurs when a single genetic factor influences multiple phenotypes, is present in many genetic studies of complex human traits. Longitudinal family data, such as the Genetic Analysis Workshop 18 data, combine the features of longitudinal studies in...

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Xu L, Craiu RV, Derkach A, et al. Using a Bayesian latent variable approach to detect pleiotropy in the Genetic Analysis Workshop 18 data. BMC Proc. 2014;8:S77doi: 10.1186/1753-6561-8-S1-S77.
Xu, L., Craiu, R. V., Derkach, A., Paterson, A. D., & Sun, L. (2014). Using a Bayesian latent variable approach to detect pleiotropy in the Genetic Analysis Workshop 18 data. BMC proceedings, 8S77. https://doi.org/10.1186/1753-6561-8-S1-S77
Xu, Lizhen, et al. "Using a Bayesian latent variable approach to detect pleiotropy in the Genetic Analysis Workshop 18 data." BMC proceedings vol. 8 (2014): S77. doi: https://doi.org/10.1186/1753-6561-8-S1-S77
Xu L, Craiu RV, Derkach A, Paterson AD, Sun L. Using a Bayesian latent variable approach to detect pleiotropy in the Genetic Analysis Workshop 18 data. BMC Proc. 2014 Jun 17;8:S77. doi: 10.1186/1753-6561-8-S1-S77. eCollection 2014. PMID: 25519405; PMCID: PMC4143687.
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Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data.

BMC proceedings

Derkach A, Lawless JF, Merico D, Paterson AD, Sun L.
PMID: 25519417
BMC Proc. 2014 Jun 17;8:S9. doi: 10.1186/1753-6561-8-S1-S9. eCollection 2014.

The focus of our work is to evaluate several recently developed pooled association tests for rare variants and assess the impact of different gene annotation methods and binning strategies on the analyses of rare variants under Genetic Analysis Workshop...

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Derkach A, Lawless JF, Merico D, et al. Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data. BMC Proc. 2014;8:S9doi: 10.1186/1753-6561-8-S1-S9.
Derkach, A., Lawless, J. F., Merico, D., Paterson, A. D., & Sun, L. (2014). Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data. BMC proceedings, 8S9. https://doi.org/10.1186/1753-6561-8-S1-S9
Derkach, Andriy, et al. "Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data." BMC proceedings vol. 8 (2014): S9. doi: https://doi.org/10.1186/1753-6561-8-S1-S9
Derkach A, Lawless JF, Merico D, Paterson AD, Sun L. Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data. BMC Proc. 2014 Jun 17;8:S9. doi: 10.1186/1753-6561-8-S1-S9. eCollection 2014. PMID: 25519417; PMCID: PMC4143759.
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Genome-Wide DNA Methylation Analysis Reveals Epigenetic Dysregulation of MicroRNA-34A in TP53-Associated Cancer Susceptibility.

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

Samuel N, Wilson G, Lemire M, Id Said B, Lou Y, Li W, Merino D, Novokmet A, Tran J, Nichols KE, Finlay JL, Choufani S, Remke M, Ramaswamy V, Cavalli FMG, Elser C, Meister L, Taylor MD, Tabori U, Irwin M, Weksberg R, Wasserman JD, Paterson AD, Hansford JR, Achatz MIW, Hudson TJ, Malkin D.
PMID: 27551116
J Clin Oncol. 2016 Oct 20;34(30):3697-3704. doi: 10.1200/JCO.2016.67.6940.

PURPOSE: Although the link between mutant TP53 and human cancer is unequivocal, a significant knowledge gap exists in clinically actionable molecular targets in Li-Fraumeni syndrome (LFS), a highly penetrant cancer predisposition syndrome associated with germline mutations in TP53. This...

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Samuel N, Wilson G, Lemire M, et al. Genome-Wide DNA Methylation Analysis Reveals Epigenetic Dysregulation of MicroRNA-34A in TP53-Associated Cancer Susceptibility. J Clin Oncol. 2016;34(30):3697-3704doi: 10.1200/JCO.2016.67.6940.
Samuel, N., Wilson, G., Lemire, M., Id Said, B., Lou, Y., Li, W., Merino, D., Novokmet, A., Tran, J., Nichols, K. E., Finlay, J. L., Choufani, S., Remke, M., Ramaswamy, V., Cavalli, F. M. G., Elser, C., Meister, L., Taylor, M. D., Tabori, U., Irwin, M., Weksberg, R., Wasserman, J. D., Paterson, A. D., Hansford, J. R., Achatz, M. I. W., Hudson, T. J., & Malkin, D. (2016). Genome-Wide DNA Methylation Analysis Reveals Epigenetic Dysregulation of MicroRNA-34A in TP53-Associated Cancer Susceptibility. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 34(30), 3697-3704. https://doi.org/10.1200/JCO.2016.67.6940
Samuel, Nardin, et al. "Genome-Wide DNA Methylation Analysis Reveals Epigenetic Dysregulation of MicroRNA-34A in TP53-Associated Cancer Susceptibility." Journal of clinical oncology : official journal of the American Society of Clinical Oncology vol. 34,30 (2016): 3697-3704. doi: https://doi.org/10.1200/JCO.2016.67.6940
Samuel N, Wilson G, Lemire M, Id Said B, Lou Y, Li W, Merino D, Novokmet A, Tran J, Nichols KE, Finlay JL, Choufani S, Remke M, Ramaswamy V, Cavalli FMG, Elser C, Meister L, Taylor MD, Tabori U, Irwin M, Weksberg R, Wasserman JD, Paterson AD, Hansford JR, Achatz MIW, Hudson TJ, Malkin D. Genome-Wide DNA Methylation Analysis Reveals Epigenetic Dysregulation of MicroRNA-34A in TP53-Associated Cancer Susceptibility. J Clin Oncol. 2016 Oct 20;34(30):3697-3704. doi: 10.1200/JCO.2016.67.6940. PMID: 27551116; PMCID: PMC6366343.
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Combined genome-wide linkage and targeted association analysis of head circumference in autism spectrum disorder families.

Journal of neurodevelopmental disorders

Woodbury-Smith M, Bilder DA, Morgan J, Jerominski L, Darlington T, Dyer T, Paterson AD, Coon H.
PMID: 28289475
J Neurodev Disord. 2017 Feb 13;9:5. doi: 10.1186/s11689-017-9187-8. eCollection 2017.

BACKGROUND: It has long been recognized that there is an association between enlarged head circumference (HC) and autism spectrum disorder (ASD), but the genetics of HC in ASD is not well understood. In order to investigate the genetic underpinning...

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Woodbury-Smith M, Bilder DA, Morgan J, et al. Combined genome-wide linkage and targeted association analysis of head circumference in autism spectrum disorder families. J Neurodev Disord. 2017;9:5doi: 10.1186/s11689-017-9187-8.
Woodbury-Smith, M., Bilder, D. A., Morgan, J., Jerominski, L., Darlington, T., Dyer, T., Paterson, A. D., & Coon, H. (2017). Combined genome-wide linkage and targeted association analysis of head circumference in autism spectrum disorder families. Journal of neurodevelopmental disorders, 95. https://doi.org/10.1186/s11689-017-9187-8
Woodbury-Smith, M, et al. "Combined genome-wide linkage and targeted association analysis of head circumference in autism spectrum disorder families." Journal of neurodevelopmental disorders vol. 9 (2017): 5. doi: https://doi.org/10.1186/s11689-017-9187-8
Woodbury-Smith M, Bilder DA, Morgan J, Jerominski L, Darlington T, Dyer T, Paterson AD, Coon H. Combined genome-wide linkage and targeted association analysis of head circumference in autism spectrum disorder families. J Neurodev Disord. 2017 Feb 13;9:5. doi: 10.1186/s11689-017-9187-8. eCollection 2017. PMID: 28289475; PMCID: PMC5304400.
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Model for cw laser collisionally induced fluorescence in low-temperature discharges.

Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics

Stewart RS, Smith DJ, Borthwick IS, Paterson AM.
PMID: 11088748
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug;62(2):2678-83. doi: 10.1103/physreve.62.2678.

A perturbed steady-state rate-equation model has been developed for the cw laser collisionally induced fluorescence (LCIF) produced by excitation on one of the 1s-2p noble gas transitions. This work is one part of a wider complementary modeling program which...

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Stewart RS, Smith DJ, Borthwick IS, et al. Model for cw laser collisionally induced fluorescence in low-temperature discharges. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000;62(2):2678-83doi: 10.1103/physreve.62.2678.
Stewart, R. S., Smith, D. J., Borthwick, I. S., & Paterson, A. M. (2000). Model for cw laser collisionally induced fluorescence in low-temperature discharges. Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics, 62(2), 2678-83. https://doi.org/10.1103/physreve.62.2678
Stewart, et al. "Model for cw laser collisionally induced fluorescence in low-temperature discharges." Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics vol. 62,2 (2000): 2678-83. doi: https://doi.org/10.1103/physreve.62.2678
Stewart RS, Smith DJ, Borthwick IS, Paterson AM. Model for cw laser collisionally induced fluorescence in low-temperature discharges. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug;62(2):2678-83. doi: 10.1103/physreve.62.2678. PMID: 11088748.
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Diabetes and diabetic retinopathy in indigenous Australians.

Clinical & experimental optometry

Wood JM, Paterson CM.
PMID: 12482296
Clin Exp Optom. 1999 Mar-Jun;82(2):80-83. doi: 10.1111/j.1444-0938.1999.tb06757.x.

The health status of indigenous Australians is significantly poorer than that of other Australians. One of the major health problems for this population is type 2 diabetes which has been reported to have much higher prevalence rates than those...

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Wood JM, Paterson CM. Diabetes and diabetic retinopathy in indigenous Australians. Clin Exp Optom. 1999;82(2):80-83doi: 10.1111/j.1444-0938.1999.tb06757.x.
Wood, J. M., & Paterson, C. M. (1999). Diabetes and diabetic retinopathy in indigenous Australians. Clinical & experimental optometry, 82(2), 80-83. https://doi.org/10.1111/j.1444-0938.1999.tb06757.x
Wood, Joanne Mary, and Paterson, Carla Maree. "Diabetes and diabetic retinopathy in indigenous Australians." Clinical & experimental optometry vol. 82,2 (1999): 80-83. doi: https://doi.org/10.1111/j.1444-0938.1999.tb06757.x
Wood JM, Paterson CM. Diabetes and diabetic retinopathy in indigenous Australians. Clin Exp Optom. 1999 Mar-Jun;82(2):80-83. doi: 10.1111/j.1444-0938.1999.tb06757.x. PMID: 12482296.
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