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Showing 1 to 12 of 484 entries
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PanWeb: a web interface for pan-genomic analysis

pipeline programs

Araújo F, Pinheiro K, Veras A.
GSID: Kkqp3BUoEl4J
Y Pantoja, K Pinheiro, A Veras, F Araújo… - PLoS …, 2017 - journals.plos.org

With increased production of genomic data since the advent of next-generation sequencing (NGS), there has been a need to develop new bioinformatics tools and areas, such as …

GLUT1 expression in pediatric adrenocortical tumors: a promising candidate to predict clinical behavior.

Oncotarget

Pinheiro C, Granja S, Longatto-Filho A, Faria AM, Fragoso MCBV, Lovisolo SM, Bonatelli M, Costa RFA, Lerário AM, Almeida MQ, Baltazar F, Zerbini MCN.
PMID: 28969033
Oncotarget. 2017 Jul 10;8(38):63835-63845. doi: 10.18632/oncotarget.19135. eCollection 2017 Sep 08.

BACKGROUND: Discrimination between benign and malignant tumors is a challenging process in pediatric adrenocortical tumors. New insights in the metabolic profile of pediatric adrenocortical tumors may contribute to this distinction, predict prognosis, as well as identify new molecular targets...

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Pinheiro C, Granja S, Longatto-Filho A, et al. GLUT1 expression in pediatric adrenocortical tumors: a promising candidate to predict clinical behavior. Oncotarget. 2017;8(38):63835-63845doi: 10.18632/oncotarget.19135.
Pinheiro, C., Granja, S., Longatto-Filho, A., Faria, A. M., Fragoso, M. C. B. V., Lovisolo, S. M., Bonatelli, M., Costa, R. F. A., Lerário, A. M., Almeida, M. Q., Baltazar, F., & Zerbini, M. C. N. (2017). GLUT1 expression in pediatric adrenocortical tumors: a promising candidate to predict clinical behavior. Oncotarget, 8(38), 63835-63845. https://doi.org/10.18632/oncotarget.19135
Pinheiro, Céline, et al. "GLUT1 expression in pediatric adrenocortical tumors: a promising candidate to predict clinical behavior." Oncotarget vol. 8,38 (2017): 63835-63845. doi: https://doi.org/10.18632/oncotarget.19135
Pinheiro C, Granja S, Longatto-Filho A, Faria AM, Fragoso MCBV, Lovisolo SM, Bonatelli M, Costa RFA, Lerário AM, Almeida MQ, Baltazar F, Zerbini MCN. GLUT1 expression in pediatric adrenocortical tumors: a promising candidate to predict clinical behavior. Oncotarget. 2017 Jul 10;8(38):63835-63845. doi: 10.18632/oncotarget.19135. eCollection 2017 Sep 08. PMID: 28969033; PMCID: PMC5609965.
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3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy.

Journal of microscopy

Vasco MS, Alves LC, Corregidor V, Correia D, Godinho CP, Sá-Correia I, Bettiol A, Watt F, Pinheiro T.
PMID: 28394445
J Microsc. 2017 Aug;267(2):227-236. doi: 10.1111/jmi.12561. Epub 2017 Apr 10.

In this work, a new tool was developed, the MORIA program that readily translates Rutherford backscattering spectrometry (RBS) output data into visual information, creating a display of the distribution of elements in a true three-dimensional (3D) environment. The program...

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Vasco MS, Alves LC, Corregidor V, et al. 3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy. J Microsc. 2017;267(2):227-236doi: 10.1111/jmi.12561.
Vasco, M. S., Alves, L. C., Corregidor, V., Correia, D., Godinho, C. P., Sá-Correia, I., Bettiol, A., Watt, F., & Pinheiro, T. (2017). 3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy. Journal of microscopy, 267(2), 227-236. https://doi.org/10.1111/jmi.12561
Vasco, M S, et al. "3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy." Journal of microscopy vol. 267,2 (2017): 227-236. doi: https://doi.org/10.1111/jmi.12561
Vasco MS, Alves LC, Corregidor V, Correia D, Godinho CP, Sá-Correia I, Bettiol A, Watt F, Pinheiro T. 3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy. J Microsc. 2017 Aug;267(2):227-236. doi: 10.1111/jmi.12561. Epub 2017 Apr 10. PMID: 28394445.
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Ethinylestradiol Exposure of Primary Culture Brown Trout Hepatocytes Induce Morphological Changes in Peroxisomes.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada

Pinheiro I, Malhão F, Madureira TV, João Rocha M, Monteiro RA, Rocha E.
PMID: 26227721
Microsc Microanal. 2015 Aug;21:81-2. doi: 10.1017/S143192761501421X.

No abstract available.

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Pinheiro I, Malhão F, Madureira TV, et al. Ethinylestradiol Exposure of Primary Culture Brown Trout Hepatocytes Induce Morphological Changes in Peroxisomes. Microsc Microanal. 2015;21:81-2doi: 10.1017/S143192761501421X.
Pinheiro, I., Malhão, F., Madureira, T. V., João Rocha, M., Monteiro, R. A., & Rocha, E. (2015). Ethinylestradiol Exposure of Primary Culture Brown Trout Hepatocytes Induce Morphological Changes in Peroxisomes. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada, 2181-2. https://doi.org/10.1017/S143192761501421X
Pinheiro, Ivone, et al. "Ethinylestradiol Exposure of Primary Culture Brown Trout Hepatocytes Induce Morphological Changes in Peroxisomes." Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada vol. 21 (2015): 81-2. doi: https://doi.org/10.1017/S143192761501421X
Pinheiro I, Malhão F, Madureira TV, João Rocha M, Monteiro RA, Rocha E. Ethinylestradiol Exposure of Primary Culture Brown Trout Hepatocytes Induce Morphological Changes in Peroxisomes. Microsc Microanal. 2015 Aug;21:81-2. doi: 10.1017/S143192761501421X. PMID: 26227721.
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Use of UV-C postharvest treatment for extending fresh whole tomato (Solanum lycopersicum, cv. Zinac) shelf-life.

Journal of food science and technology

Pinheiro J, Alegria C, Abreu M, Gonçalves EM, Silva CL.
PMID: 26243927
J Food Sci Technol. 2015 Aug;52(8):5066-74. doi: 10.1007/s13197-014-1550-0. Epub 2014 Sep 25.

The effect of UV-C treatments (0.32, 0.97, 2.56, 4.16 and 4.83 kJ.m(-2) at 254 nm) on the physical-chemical properties [colour, texture, total phenolic content (TPC), weight loss (WL)], and mesophylic counts of whole tomato, was evaluated during 15 days...

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Pinheiro J, Alegria C, Abreu M, et al. Use of UV-C postharvest treatment for extending fresh whole tomato (Solanum lycopersicum, cv. Zinac) shelf-life. J Food Sci Technol. 2014;52(8):5066-74doi: 10.1007/s13197-014-1550-0.
Pinheiro, J., Alegria, C., Abreu, M., Gonçalves, E. M., & Silva, C. L. (2015). Use of UV-C postharvest treatment for extending fresh whole tomato (Solanum lycopersicum, cv. Zinac) shelf-life. Journal of food science and technology, 52(8), 5066-74. https://doi.org/10.1007/s13197-014-1550-0
Pinheiro, Joaquina, et al. "Use of UV-C postharvest treatment for extending fresh whole tomato (Solanum lycopersicum, cv. Zinac) shelf-life." Journal of food science and technology vol. 52,8 (2015): 5066-74. doi: https://doi.org/10.1007/s13197-014-1550-0
Pinheiro J, Alegria C, Abreu M, Gonçalves EM, Silva CL. Use of UV-C postharvest treatment for extending fresh whole tomato (Solanum lycopersicum, cv. Zinac) shelf-life. J Food Sci Technol. 2015 Aug;52(8):5066-74. doi: 10.1007/s13197-014-1550-0. Epub 2014 Sep 25. PMID: 26243927; PMCID: PMC4519460.
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Can mixtures of cyanotoxins represent a risk to the zooplankton? The case study of Daphnia magna Straus exposed to hepatotoxic and neurotoxic cyanobacterial extracts.

Harmful algae

Freitas EC, Pinheiro C, Rocha O, Loureiro S.
PMID: 28040103
Harmful Algae. 2014 Jan;31:143-152. doi: 10.1016/j.hal.2013.11.004. Epub 2013 Dec 01.

Worldwide, cyanobacterial blooms have been increasing in intensity and frequency, with toxic cyanobacteria sometimes dominant throughout the year in many freshwater bodies. Since the coexistence of more than one type of cyanotoxins in freshwater environments is a common phenomenon,...

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Freitas EC, Pinheiro C, Rocha O, et al. Can mixtures of cyanotoxins represent a risk to the zooplankton? The case study of Daphnia magna Straus exposed to hepatotoxic and neurotoxic cyanobacterial extracts. Harmful Algae. 2013;31:143-152doi: 10.1016/j.hal.2013.11.004.
Freitas, E. C., Pinheiro, C., Rocha, O., & Loureiro, S. (2014). Can mixtures of cyanotoxins represent a risk to the zooplankton? The case study of Daphnia magna Straus exposed to hepatotoxic and neurotoxic cyanobacterial extracts. Harmful algae, 31143-152. https://doi.org/10.1016/j.hal.2013.11.004
Freitas, Emanuela Cristina, et al. "Can mixtures of cyanotoxins represent a risk to the zooplankton? The case study of Daphnia magna Straus exposed to hepatotoxic and neurotoxic cyanobacterial extracts." Harmful algae vol. 31 (2014): 143-152. doi: https://doi.org/10.1016/j.hal.2013.11.004
Freitas EC, Pinheiro C, Rocha O, Loureiro S. Can mixtures of cyanotoxins represent a risk to the zooplankton? The case study of Daphnia magna Straus exposed to hepatotoxic and neurotoxic cyanobacterial extracts. Harmful Algae. 2014 Jan;31:143-152. doi: 10.1016/j.hal.2013.11.004. Epub 2013 Dec 01. PMID: 28040103.
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Data supporting the co-expression of PDHA1 gene and of its paralogue PDHA2 in somatic cells of a family.

Data in brief

Pinheiro A, Silva MJ, Pavlu-Pereira H, Florindo C, Barroso M, Marques B, Correia H, Oliveira A, Gaspar A, Tavares de Almeida I, Rivera I.
PMID: 27656664
Data Brief. 2016 Aug 20;9:68-77. doi: 10.1016/j.dib.2016.08.029. eCollection 2016 Dec.

This article presents a dataset proving the simultaneous presence of a 5'UTR-truncated PDHA1 mRNA and a full-length PDHA2 mRNA in the somatic cells of a PDC-deficient female patient and all members of her immediate family (parents and brother). We...

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Pinheiro A, Silva MJ, Pavlu-Pereira H, et al. Data supporting the co-expression of PDHA1 gene and of its paralogue PDHA2 in somatic cells of a family. Data Brief. 2016;9:68-77doi: 10.1016/j.dib.2016.08.029.
Pinheiro, A., Silva, M. J., Pavlu-Pereira, H., Florindo, C., Barroso, M., Marques, B., Correia, H., Oliveira, A., Gaspar, A., Tavares de Almeida, I., & Rivera, I. (2016). Data supporting the co-expression of PDHA1 gene and of its paralogue PDHA2 in somatic cells of a family. Data in brief, 968-77. https://doi.org/10.1016/j.dib.2016.08.029
Pinheiro, Ana, et al. "Data supporting the co-expression of PDHA1 gene and of its paralogue PDHA2 in somatic cells of a family." Data in brief vol. 9 (2016): 68-77. doi: https://doi.org/10.1016/j.dib.2016.08.029
Pinheiro A, Silva MJ, Pavlu-Pereira H, Florindo C, Barroso M, Marques B, Correia H, Oliveira A, Gaspar A, Tavares de Almeida I, Rivera I. Data supporting the co-expression of PDHA1 gene and of its paralogue PDHA2 in somatic cells of a family. Data Brief. 2016 Aug 20;9:68-77. doi: 10.1016/j.dib.2016.08.029. eCollection 2016 Dec. PMID: 27656664; PMCID: PMC5021711.
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A Synthesis of Current Surveillance Planning Methods for the Sequential Monitoring of Drug and Vaccine Adverse Effects Using Electronic Health Care Data.

EGEMS (Washington, DC)

Nelson JC, Wellman R, Yu O, Cook AJ, Maro JC, Ouellet-Hellstrom R, Boudreau D, Floyd JS, Heckbert SR, Pinheiro S, Reichman M, Shoaibi A.
PMID: 27713904
EGEMS (Wash DC). 2016 Sep 06;4(1):1219. doi: 10.13063/2327-9214.1219. eCollection 2016.

INTRODUCTION: The large-scale assembly of electronic health care data combined with the use of sequential monitoring has made proactive postmarket drug- and vaccine-safety surveillance possible. Although sequential designs have been used extensively in randomized trials, less attention has been...

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Nelson JC, Wellman R, Yu O, et al. A Synthesis of Current Surveillance Planning Methods for the Sequential Monitoring of Drug and Vaccine Adverse Effects Using Electronic Health Care Data. EGEMS (Wash DC). 2016;4(1):1219doi: 10.13063/2327-9214.1219.
Nelson, J. C., Wellman, R., Yu, O., Cook, A. J., Maro, J. C., Ouellet-Hellstrom, R., Boudreau, D., Floyd, J. S., Heckbert, S. R., Pinheiro, S., Reichman, M., & Shoaibi, A. (2016). A Synthesis of Current Surveillance Planning Methods for the Sequential Monitoring of Drug and Vaccine Adverse Effects Using Electronic Health Care Data. EGEMS (Washington, DC), 4(1), 1219. https://doi.org/10.13063/2327-9214.1219
Nelson, Jennifer C, et al. "A Synthesis of Current Surveillance Planning Methods for the Sequential Monitoring of Drug and Vaccine Adverse Effects Using Electronic Health Care Data." EGEMS (Washington, DC) vol. 4,1 (2016): 1219. doi: https://doi.org/10.13063/2327-9214.1219
Nelson JC, Wellman R, Yu O, Cook AJ, Maro JC, Ouellet-Hellstrom R, Boudreau D, Floyd JS, Heckbert SR, Pinheiro S, Reichman M, Shoaibi A. A Synthesis of Current Surveillance Planning Methods for the Sequential Monitoring of Drug and Vaccine Adverse Effects Using Electronic Health Care Data. EGEMS (Wash DC). 2016 Sep 06;4(1):1219. doi: 10.13063/2327-9214.1219. eCollection 2016. PMID: 27713904; PMCID: PMC5051582.
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Morphology of Echinostoma paraensei Lie & Basch, 1967 (Trematoda) cercariae.

Brazilian journal of biology = Revista brasleira de biologia

Matos FA, Sant'Anna V, Maldonado Júnior A, Pinheiro J.
PMID: 28954016
Braz J Biol. 2018 May;78(2):391-393. doi: 10.1590/1519-6984.169855. Epub 2017 Sep 21.

No abstract available.

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Matos FA, Sant'Anna V, Maldonado Júnior A, et al. Morphology of Echinostoma paraensei Lie & Basch, 1967 (Trematoda) cercariae. Braz J Biol. 2017;78(2):391-393doi: 10.1590/1519-6984.169855.
Matos, F. A., Sant'Anna, V., Maldonado Júnior, A., & Pinheiro, J. (2018). Morphology of Echinostoma paraensei Lie & Basch, 1967 (Trematoda) cercariae. Brazilian journal of biology = Revista brasleira de biologia, 78(2), 391-393. https://doi.org/10.1590/1519-6984.169855
Matos, F Almeida, et al. "Morphology of Echinostoma paraensei Lie & Basch, 1967 (Trematoda) cercariae." Brazilian journal of biology = Revista brasleira de biologia vol. 78,2 (2018): 391-393. doi: https://doi.org/10.1590/1519-6984.169855
Matos FA, Sant'Anna V, Maldonado Júnior A, Pinheiro J. Morphology of Echinostoma paraensei Lie & Basch, 1967 (Trematoda) cercariae. Braz J Biol. 2018 May;78(2):391-393. doi: 10.1590/1519-6984.169855. Epub 2017 Sep 21. PMID: 28954016.
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BIOMATERIAL IMPLANTS IN BONE FRACTURES PRODUCED IN RATS FIBULAS.

Revista brasileira de ortopedia

Shirane HY, Oda DY, Pinheiro TC, Cunha MR.
PMID: 27047813
Rev Bras Ortop. 2015 Dec 12;45(5):478-82. doi: 10.1016/S2255-4971(15)30439-0. eCollection 2010.

UNLABELLED: To evaluate the importance of collagen and hydroxyapatite in the regeneration of fractures experimentally induced in the fibulas of rats.METHOD: 15 rats were used. These were subjected to surgery to remove a fragment from the fibula. This site...

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Shirane HY, Oda DY, Pinheiro TC, et al. BIOMATERIAL IMPLANTS IN BONE FRACTURES PRODUCED IN RATS FIBULAS. Rev Bras Ortop. 2015;45(5):478-82doi: 10.1016/S2255-4971(15)30439-0.
Shirane, H. Y., Oda, D. Y., Pinheiro, T. C., & Cunha, M. R. (2010). BIOMATERIAL IMPLANTS IN BONE FRACTURES PRODUCED IN RATS FIBULAS. Revista brasileira de ortopedia, 45(5), 478-82. https://doi.org/10.1016/S2255-4971(15)30439-0
Shirane, Henrique Yassuhiro, et al. "BIOMATERIAL IMPLANTS IN BONE FRACTURES PRODUCED IN RATS FIBULAS." Revista brasileira de ortopedia vol. 45,5 (2010): 478-82. doi: https://doi.org/10.1016/S2255-4971(15)30439-0
Shirane HY, Oda DY, Pinheiro TC, Cunha MR. BIOMATERIAL IMPLANTS IN BONE FRACTURES PRODUCED IN RATS FIBULAS. Rev Bras Ortop. 2015 Dec 12;45(5):478-82. doi: 10.1016/S2255-4971(15)30439-0. eCollection 2010. PMID: 27047813; PMCID: PMC4799216.
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Prognostic evaluation of soluble CD40L in acute myocardial infarction: is not fancy, is science!.

Annals of translational medicine

Napoleão P, Carmo MM, Pinheiro T.
PMID: 28275635
Ann Transl Med. 2017 Feb;5(4):90. doi: 10.21037/atm.2017.01.58.

No abstract available.

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Napoleão P, Carmo MM, Pinheiro T. Prognostic evaluation of soluble CD40L in acute myocardial infarction: is not fancy, is science!. Ann Transl Med. 2017;5(4):90doi: 10.21037/atm.2017.01.58.
Napoleão, P., Carmo, M. M., & Pinheiro, T. (2017). Prognostic evaluation of soluble CD40L in acute myocardial infarction: is not fancy, is science!. Annals of translational medicine, 5(4), 90. https://doi.org/10.21037/atm.2017.01.58
Napoleão, Patrícia, et al. "Prognostic evaluation of soluble CD40L in acute myocardial infarction: is not fancy, is science!." Annals of translational medicine vol. 5,4 (2017): 90. doi: https://doi.org/10.21037/atm.2017.01.58
Napoleão P, Carmo MM, Pinheiro T. Prognostic evaluation of soluble CD40L in acute myocardial infarction: is not fancy, is science!. Ann Transl Med. 2017 Feb;5(4):90. doi: 10.21037/atm.2017.01.58. PMID: 28275635; PMCID: PMC5337219.
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Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix.

Frontiers in plant science

Guerra-Guimarães L, Tenente R, Pinheiro C, Chaves I, Silva Mdo C, Cardoso FM, Planchon S, Barros DR, Renaut J, Ricardo CP.
PMID: 26175744
Front Plant Sci. 2015 Jun 30;6:478. doi: 10.3389/fpls.2015.00478. eCollection 2015.

A proteomic analysis of the apoplastic fluid (APF) of coffee leaves was conducted to investigate the cellular processes associated with incompatible (resistant) and compatible (susceptible) Coffea arabica-Hemileia vastatrix interactions, during the 24-96 hai period. The APF proteins were extracted...

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Guerra-Guimarães L, Tenente R, Pinheiro C, et al. Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. Front Plant Sci. 2015;6:478doi: 10.3389/fpls.2015.00478.
Guerra-Guimarães, L., Tenente, R., Pinheiro, C., Chaves, I., Silva, M. d. o. . C., Cardoso, F. M., Planchon, S., Barros, D. R., Renaut, J., & Ricardo, C. P. (2015). Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. Frontiers in plant science, 6478. https://doi.org/10.3389/fpls.2015.00478
Guerra-Guimarães, Leonor, et al. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in plant science vol. 6 (2015): 478. doi: https://doi.org/10.3389/fpls.2015.00478
Guerra-Guimarães L, Tenente R, Pinheiro C, Chaves I, Silva Mdo C, Cardoso FM, Planchon S, Barros DR, Renaut J, Ricardo CP. Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. Front Plant Sci. 2015 Jun 30;6:478. doi: 10.3389/fpls.2015.00478. eCollection 2015. PMID: 26175744; PMCID: PMC4484983.
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