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Germanene: the germanium analogue of graphene.

Journal of physics. Condensed matter : an Institute of Physics journal

Acun A, Zhang L, Bampoulis P, Farmanbar M, van Houselt A, Rudenko AN, Lingenfelder M, Brocks G, Poelsema B, Katsnelson MI, Zandvliet HJ.
PMID: 26466359
J Phys Condens Matter. 2015 Nov 11;27(44):443002. doi: 10.1088/0953-8984/27/44/443002. Epub 2015 Oct 14.

Recently, several research groups have reported the growth of germanene, a new member of the graphene family. Germanene is in many aspects very similar to graphene, but in contrast to the planar graphene lattice, the germanene honeycomb lattice is...

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Acun A, Zhang L, Bampoulis P, et al. Germanene: the germanium analogue of graphene. J Phys Condens Matter. 2015;27(44):443002doi: 10.1088/0953-8984/27/44/443002.
Acun, A., Zhang, L., Bampoulis, P., Farmanbar, M., van Houselt, A., Rudenko, A. N., Lingenfelder, M., Brocks, G., Poelsema, B., Katsnelson, M. I., & Zandvliet, H. J. (2015). Germanene: the germanium analogue of graphene. Journal of physics. Condensed matter : an Institute of Physics journal, 27(44), 443002. https://doi.org/10.1088/0953-8984/27/44/443002
Acun, A, et al. "Germanene: the germanium analogue of graphene." Journal of physics. Condensed matter : an Institute of Physics journal vol. 27,44 (2015): 443002. doi: https://doi.org/10.1088/0953-8984/27/44/443002
Acun A, Zhang L, Bampoulis P, Farmanbar M, van Houselt A, Rudenko AN, Lingenfelder M, Brocks G, Poelsema B, Katsnelson MI, Zandvliet HJ. Germanene: the germanium analogue of graphene. J Phys Condens Matter. 2015 Nov 11;27(44):443002. doi: 10.1088/0953-8984/27/44/443002. Epub 2015 Oct 14. PMID: 26466359.
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Influence of selenophene on the properties of semi-random polymers and their blends with PC61BM.

Nanotechnology

Rudenko AE, Noh S, Thompson BC.
PMID: 24196287
Nanotechnology. 2013 Dec 06;24(48):484002. doi: 10.1088/0957-4484/24/48/484002. Epub 2013 Nov 06.

In an effort to broaden the absorption of conjugated polymers, atomistic bandgap control was applied to the semi-random polymer architecture. Here, we report the physical properties of semi-random polyselenophenes as compared to analogous polythiophenes. In order to examine the...

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Rudenko AE, Noh S, Thompson BC. Influence of selenophene on the properties of semi-random polymers and their blends with PC61BM. Nanotechnology. 2013;24(48):484002doi: 10.1088/0957-4484/24/48/484002.
Rudenko, A. E., Noh, S., & Thompson, B. C. (2013). Influence of selenophene on the properties of semi-random polymers and their blends with PC61BM. Nanotechnology, 24(48), 484002. https://doi.org/10.1088/0957-4484/24/48/484002
Rudenko, Andrey E, et al. "Influence of selenophene on the properties of semi-random polymers and their blends with PC61BM." Nanotechnology vol. 24,48 (2013): 484002. doi: https://doi.org/10.1088/0957-4484/24/48/484002
Rudenko AE, Noh S, Thompson BC. Influence of selenophene on the properties of semi-random polymers and their blends with PC61BM. Nanotechnology. 2013 Dec 06;24(48):484002. doi: 10.1088/0957-4484/24/48/484002. Epub 2013 Nov 06. PMID: 24196287.
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Chemical modifications and stability of phosphorene with impurities: a first principles study.

Physical chemistry chemical physics : PCCP

Boukhvalov DW, Rudenko AN, Prishchenko DA, Mazurenko VG, Katsnelson MI.
PMID: 25990621
Phys Chem Chem Phys. 2015 Jun 21;17(23):15209-17. doi: 10.1039/c5cp01901j.

We perform a systematic first-principles study of phosphorene in the presence of typical monovalent (hydrogen and fluorine) and divalent (oxygen) impurities. The results of our modeling suggest a decomposition of phosphorene into weakly bonded one-dimensional (1D) chains upon single-...

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Boukhvalov DW, Rudenko AN, Prishchenko DA, et al. Chemical modifications and stability of phosphorene with impurities: a first principles study. Phys Chem Chem Phys. 2015;17(23):15209-17doi: 10.1039/c5cp01901j.
Boukhvalov, D. W., Rudenko, A. N., Prishchenko, D. A., Mazurenko, V. G., & Katsnelson, M. I. (2015). Chemical modifications and stability of phosphorene with impurities: a first principles study. Physical chemistry chemical physics : PCCP, 17(23), 15209-17. https://doi.org/10.1039/c5cp01901j
Boukhvalov, D W, et al. "Chemical modifications and stability of phosphorene with impurities: a first principles study." Physical chemistry chemical physics : PCCP vol. 17,23 (2015): 15209-17. doi: https://doi.org/10.1039/c5cp01901j
Boukhvalov DW, Rudenko AN, Prishchenko DA, Mazurenko VG, Katsnelson MI. Chemical modifications and stability of phosphorene with impurities: a first principles study. Phys Chem Chem Phys. 2015 Jun 21;17(23):15209-17. doi: 10.1039/c5cp01901j. PMID: 25990621.
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Implication of Gastric Cancer Molecular Genetic Markers in Surgical Practice.

Current genomics

Nemtsova MV, Strelnikov VV, Tanas AS, Bykov II, Zaletaev DV, Rudenko VV, Glukhov AI, Kchorobrich TV, Li Y, Tarasov VV, Barreto GE, Aliev G.
PMID: 29081696
Curr Genomics. 2017 Oct;18(5):408-415. doi: 10.2174/1389202918666170329110021.

INTRODUCTION: We have investigated aberrant methylation of genes CDH1, RASSF1A, MLH1, N33, DAPK, expression of genes hTERT, MMP7, MMP9, BIRC5 (survivin), PTGS2, and activity of telomerase of 106 gastric tumor samples obtained intra-operatively and 53 gastric tumor samples from...

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Nemtsova MV, Strelnikov VV, Tanas AS, et al. Implication of Gastric Cancer Molecular Genetic Markers in Surgical Practice. Curr Genomics. 2017;18(5):408-415doi: 10.2174/1389202918666170329110021.
Nemtsova, M. V., Strelnikov, V. V., Tanas, A. S., Bykov, I. I., Zaletaev, D. V., Rudenko, V. V., Glukhov, A. I., Kchorobrich, T. V., Li, Y., Tarasov, V. V., Barreto, G. E., & Aliev, G. (2017). Implication of Gastric Cancer Molecular Genetic Markers in Surgical Practice. Current genomics, 18(5), 408-415. https://doi.org/10.2174/1389202918666170329110021
Nemtsova, Marina V, et al. "Implication of Gastric Cancer Molecular Genetic Markers in Surgical Practice." Current genomics vol. 18,5 (2017): 408-415. doi: https://doi.org/10.2174/1389202918666170329110021
Nemtsova MV, Strelnikov VV, Tanas AS, Bykov II, Zaletaev DV, Rudenko VV, Glukhov AI, Kchorobrich TV, Li Y, Tarasov VV, Barreto GE, Aliev G. Implication of Gastric Cancer Molecular Genetic Markers in Surgical Practice. Curr Genomics. 2017 Oct;18(5):408-415. doi: 10.2174/1389202918666170329110021. PMID: 29081696; PMCID: PMC5635646.
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Erratum: Structural and Electronic Properties of Germanene on MoS_{2} [Phys. Rev. Lett. 116, 256804 (2016)].

Physical review letters

Zhang L, Bampoulis P, Rudenko AN, Yao Q, van Houselt A, Poelsema B, Katsnelson MI, Zandvliet HJ.
PMID: 27517796
Phys Rev Lett. 2016 Jul 29;117(5):059902. doi: 10.1103/PhysRevLett.117.059902. Epub 2016 Jul 27.

This corrects the article DOI: 10.1103/PhysRevLett.116.256804.

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Zhang L, Bampoulis P, Rudenko AN, et al. Erratum: Structural and Electronic Properties of Germanene on MoS_{2} [Phys. Rev. Lett. 116, 256804 (2016)]. Phys Rev Lett. 2016;117(5):059902doi: 10.1103/PhysRevLett.117.059902.
Zhang, L., Bampoulis, P., Rudenko, A. N., Yao, Q., van Houselt, A., Poelsema, B., Katsnelson, M. I., & Zandvliet, H. J. (2016). Erratum: Structural and Electronic Properties of Germanene on MoS_{2} [Phys. Rev. Lett. 116, 256804 (2016)]. Physical review letters, 117(5), 059902. https://doi.org/10.1103/PhysRevLett.117.059902
Zhang, L, et al. "Erratum: Structural and Electronic Properties of Germanene on MoS_{2} [Phys. Rev. Lett. 116, 256804 (2016)]." Physical review letters vol. 117,5 (2016): 059902. doi: https://doi.org/10.1103/PhysRevLett.117.059902
Zhang L, Bampoulis P, Rudenko AN, Yao Q, van Houselt A, Poelsema B, Katsnelson MI, Zandvliet HJ. Erratum: Structural and Electronic Properties of Germanene on MoS_{2} [Phys. Rev. Lett. 116, 256804 (2016)]. Phys Rev Lett. 2016 Jul 29;117(5):059902. doi: 10.1103/PhysRevLett.117.059902. Epub 2016 Jul 27. PMID: 27517796.
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Flash-imprinting of intense femtosecond surface plasmons for advanced nanoantenna fabrication.

Optics letters

Kuchmizhak AA, Ionin AA, Kudryashov SI, Makarov SV, Rudenko AA, Kulchin YN, Vitrik OB, Efimov TV.
PMID: 25872048
Opt Lett. 2015 Apr 15;40(8):1687-90. doi: 10.1364/OL.40.001687.

In this work, we demonstrate an all-laser method of fabrication of optical nanoantennas (ONAs) with an additional coupling/focusing diffractive element. This method is based on double-shot femtosecond laser nanoablation of a thin supported metallic film, inducing a sequence of...

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Kuchmizhak AA, Ionin AA, Kudryashov SI, et al. Flash-imprinting of intense femtosecond surface plasmons for advanced nanoantenna fabrication. Opt Lett. 2015;40(8):1687-90doi: 10.1364/OL.40.001687.
Kuchmizhak, A. A., Ionin, A. A., Kudryashov, S. I., Makarov, S. V., Rudenko, A. A., Kulchin, Y. N., Vitrik, O. B., & Efimov, T. V. (2015). Flash-imprinting of intense femtosecond surface plasmons for advanced nanoantenna fabrication. Optics letters, 40(8), 1687-90. https://doi.org/10.1364/OL.40.001687
Kuchmizhak, A A, et al. "Flash-imprinting of intense femtosecond surface plasmons for advanced nanoantenna fabrication." Optics letters vol. 40,8 (2015): 1687-90. doi: https://doi.org/10.1364/OL.40.001687
Kuchmizhak AA, Ionin AA, Kudryashov SI, Makarov SV, Rudenko AA, Kulchin YN, Vitrik OB, Efimov TV. Flash-imprinting of intense femtosecond surface plasmons for advanced nanoantenna fabrication. Opt Lett. 2015 Apr 15;40(8):1687-90. doi: 10.1364/OL.40.001687. PMID: 25872048.
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Leptin potentiates astrogenesis in the developing hypothalamus.

Molecular metabolism

Rottkamp DM, Rudenko IA, Maier MT, Roshanbin S, Yulyaningsih E, Perez L, Valdearcos M, Chua S, Koliwad SK, Xu AW.
PMID: 26629411
Mol Metab. 2015 Sep 04;4(11):881-9. doi: 10.1016/j.molmet.2015.08.005. eCollection 2015 Nov.

BACKGROUND: The proper establishment of hypothalamic feeding circuits during early development has a profound influence on energy homeostasis, and perturbing this process could predispose individuals to obesity and its associated consequences later in life. The maturation of hypothalamic neuronal...

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Rottkamp DM, Rudenko IA, Maier MT, et al. Leptin potentiates astrogenesis in the developing hypothalamus. Mol Metab. 2015;4(11):881-9doi: 10.1016/j.molmet.2015.08.005.
Rottkamp, D. M., Rudenko, I. A., Maier, M. T., Roshanbin, S., Yulyaningsih, E., Perez, L., Valdearcos, M., Chua, S., Koliwad, S. K., & Xu, A. W. (2015). Leptin potentiates astrogenesis in the developing hypothalamus. Molecular metabolism, 4(11), 881-9. https://doi.org/10.1016/j.molmet.2015.08.005
Rottkamp, Daniele M, et al. "Leptin potentiates astrogenesis in the developing hypothalamus." Molecular metabolism vol. 4,11 (2015): 881-9. doi: https://doi.org/10.1016/j.molmet.2015.08.005
Rottkamp DM, Rudenko IA, Maier MT, Roshanbin S, Yulyaningsih E, Perez L, Valdearcos M, Chua S, Koliwad SK, Xu AW. Leptin potentiates astrogenesis in the developing hypothalamus. Mol Metab. 2015 Sep 04;4(11):881-9. doi: 10.1016/j.molmet.2015.08.005. eCollection 2015 Nov. PMID: 26629411; PMCID: PMC4632125.
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Magnetic order in FeCr(2)S(4)-type chalcogenide spinels.

Journal of physics. Condensed matter : an Institute of Physics journal

Berry FJ, Dmitrieva TV, Ovanesyan NS, Lyubutin IS, Thomas MF, Sarkisyan VA, Ren X, Aminov TG, Shabunina GG, Rudenko V, Vorotynov A, Dubinskaya YL.
PMID: 21694081
J Phys Condens Matter. 2007 Jul 04;19(26):266204. doi: 10.1088/0953-8984/19/26/266204. Epub 2007 Jun 07.

The thiospinels of composition FeCr(2)S(4) and Fe(1+x)Cr(2-2x)Sn(x)S(4) with 0

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Berry FJ, Dmitrieva TV, Ovanesyan NS, et al. Magnetic order in FeCr(2)S(4)-type chalcogenide spinels. J Phys Condens Matter. 2007;19(26):266204doi: 10.1088/0953-8984/19/26/266204.
Berry, F. J., Dmitrieva, T. V., Ovanesyan, N. S., Lyubutin, I. S., Thomas, M. F., Sarkisyan, V. A., Ren, X., Aminov, T. G., Shabunina, G. G., Rudenko, V., Vorotynov, A., & Dubinskaya, Y. L. (2007). Magnetic order in FeCr(2)S(4)-type chalcogenide spinels. Journal of physics. Condensed matter : an Institute of Physics journal, 19(26), 266204. https://doi.org/10.1088/0953-8984/19/26/266204
Berry, F J, et al. "Magnetic order in FeCr(2)S(4)-type chalcogenide spinels." Journal of physics. Condensed matter : an Institute of Physics journal vol. 19,26 (2007): 266204. doi: https://doi.org/10.1088/0953-8984/19/26/266204
Berry FJ, Dmitrieva TV, Ovanesyan NS, Lyubutin IS, Thomas MF, Sarkisyan VA, Ren X, Aminov TG, Shabunina GG, Rudenko V, Vorotynov A, Dubinskaya YL. Magnetic order in FeCr(2)S(4)-type chalcogenide spinels. J Phys Condens Matter. 2007 Jul 04;19(26):266204. doi: 10.1088/0953-8984/19/26/266204. Epub 2007 Jun 07. PMID: 21694081.
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Virtual Screening in Search for a Chemical Probe for Angiotensin-Converting Enzyme 2 (ACE2).

Molecules (Basel, Switzerland)

Kravets IO, Dudenko DV, Pashenko AE, Borisova TA, Tolstanova GM, Ryabukhin SV, Volochnyuk DM.
PMID: 34946667
Molecules. 2021 Dec 14;26(24). doi: 10.3390/molecules26247584.

We elaborate new models for ACE and ACE2 receptors with an excellent prediction power compared to previous models. We propose promising workflows for working with huge compound collections, thereby enabling us to discover optimized protocols for virtual screening management....

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Kravets IO, Dudenko DV, Pashenko AE, et al. Virtual Screening in Search for a Chemical Probe for Angiotensin-Converting Enzyme 2 (ACE2). Molecules. 2021;26(24)doi: 10.3390/molecules26247584.
Kravets, I. O., Dudenko, D. V., Pashenko, A. E., Borisova, T. A., Tolstanova, G. M., Ryabukhin, S. V., & Volochnyuk, D. M. (2021). Virtual Screening in Search for a Chemical Probe for Angiotensin-Converting Enzyme 2 (ACE2). Molecules (Basel, Switzerland), 26(24), . https://doi.org/10.3390/molecules26247584
Kravets, Iryna O, et al. "Virtual Screening in Search for a Chemical Probe for Angiotensin-Converting Enzyme 2 (ACE2)." Molecules (Basel, Switzerland) vol. 26,24 (2021). doi: https://doi.org/10.3390/molecules26247584
Kravets IO, Dudenko DV, Pashenko AE, Borisova TA, Tolstanova GM, Ryabukhin SV, Volochnyuk DM. Virtual Screening in Search for a Chemical Probe for Angiotensin-Converting Enzyme 2 (ACE2). Molecules. 2021 Dec 14;26(24). doi: 10.3390/molecules26247584. PMID: 34946667; PMCID: PMC8707431.
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Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and Its Relation to Epigenomic Subtypes and HER2 Overexpression.

Biomedicines

Simonova OA, Kuznetsova EB, Tanas AS, Rudenko VV, Poddubskaya EV, Kekeeva TV, Trotsenko ID, Larin SS, Kutsev SI, Zaletaev DV, Nemtsova MV, Strelnikov VV.
PMID: 32397602
Biomedicines. 2020 May 10;8(5). doi: 10.3390/biomedicines8050116.

Matrix metalloproteinases (MMPs) and their tissue inhibitors (TIMPs) substantially contribute to the regulation of intercellular interactions and thereby play a role in maintaining the tissue structure and function. We examined methylation of a subset of 5'-cytosine-phosphate-guanine-3' (CpG) dinucleotides in...

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Simonova OA, Kuznetsova EB, Tanas AS, et al. Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and Its Relation to Epigenomic Subtypes and HER2 Overexpression. Biomedicines. 2020;8(5)doi: 10.3390/biomedicines8050116.
Simonova, O. A., Kuznetsova, E. B., Tanas, A. S., Rudenko, V. V., Poddubskaya, E. V., Kekeeva, T. V., Trotsenko, I. D., Larin, S. S., Kutsev, S. I., Zaletaev, D. V., Nemtsova, M. V., & Strelnikov, V. V. (2020). Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and Its Relation to Epigenomic Subtypes and HER2 Overexpression. Biomedicines, 8(5), . https://doi.org/10.3390/biomedicines8050116
Simonova, Olga A, et al. "Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and Its Relation to Epigenomic Subtypes and HER2 Overexpression." Biomedicines vol. 8,5 (2020). doi: https://doi.org/10.3390/biomedicines8050116
Simonova OA, Kuznetsova EB, Tanas AS, Rudenko VV, Poddubskaya EV, Kekeeva TV, Trotsenko ID, Larin SS, Kutsev SI, Zaletaev DV, Nemtsova MV, Strelnikov VV. Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and Its Relation to Epigenomic Subtypes and HER2 Overexpression. Biomedicines. 2020 May 10;8(5). doi: 10.3390/biomedicines8050116. PMID: 32397602; PMCID: PMC7277193.
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Anisotropic Two-Dimensional Screening at the Surface of Black Phosphorus.

Physical review letters

Kiraly B, Knol EJ, Volckaert K, Biswas D, Rudenko AN, Prishchenko DA, Mazurenko VG, Katsnelson MI, Hofmann P, Wegner D, Khajetoorians AA.
PMID: 31809169
Phys Rev Lett. 2019 Nov 22;123(21):216403. doi: 10.1103/PhysRevLett.123.216403.

Electronic screening can have direct consequences for structural arrangements on the nanoscale, such as on the periodic ordering of adatoms on a surface. So far, such ordering phenomena have been explained in terms of isotropic screening of free electronlike...

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Kiraly B, Knol EJ, Volckaert K, et al. Anisotropic Two-Dimensional Screening at the Surface of Black Phosphorus. Phys Rev Lett. 2019;123(21):216403doi: 10.1103/PhysRevLett.123.216403.
Kiraly, B., Knol, E. J., Volckaert, K., Biswas, D., Rudenko, A. N., Prishchenko, D. A., Mazurenko, V. G., Katsnelson, M. I., Hofmann, P., Wegner, D., & Khajetoorians, A. A. (2019). Anisotropic Two-Dimensional Screening at the Surface of Black Phosphorus. Physical review letters, 123(21), 216403. https://doi.org/10.1103/PhysRevLett.123.216403
Kiraly, Brian, et al. "Anisotropic Two-Dimensional Screening at the Surface of Black Phosphorus." Physical review letters vol. 123,21 (2019): 216403. doi: https://doi.org/10.1103/PhysRevLett.123.216403
Kiraly B, Knol EJ, Volckaert K, Biswas D, Rudenko AN, Prishchenko DA, Mazurenko VG, Katsnelson MI, Hofmann P, Wegner D, Khajetoorians AA. Anisotropic Two-Dimensional Screening at the Surface of Black Phosphorus. Phys Rev Lett. 2019 Nov 22;123(21):216403. doi: 10.1103/PhysRevLett.123.216403. PMID: 31809169.
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Emulating Natural Product Conformation by Cooperative, Non-Covalent Fluorine Interactions.

Chemistry (Weinheim an der Bergstrasse, Germany)

Scheidt F, Selter P, Santschi N, Holland MC, Dudenko DV, Daniliuc C, Mück-Lichtenfeld C, Hansen MR, Gilmour R.
PMID: 27788283
Chemistry. 2017 May 02;23(25):6142-6149. doi: 10.1002/chem.201604632. Epub 2016 Nov 25.

Pervasive in Nature, the propane unit is an essential component of numerous bioactive molecules. These range from acyclic systems, such as the neurotransmitter γ-aminobutyric acid, through to the bicyclic nuclei of various chromanes and dihydrobenzofurans. In the latter case,...

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Scheidt F, Selter P, Santschi N, et al. Emulating Natural Product Conformation by Cooperative, Non-Covalent Fluorine Interactions. Chemistry. 2016;23(25):6142-6149doi: 10.1002/chem.201604632.
Scheidt, F., Selter, P., Santschi, N., Holland, M. C., Dudenko, D. V., Daniliuc, C., Mück-Lichtenfeld, C., Hansen, M. R., & Gilmour, R. (2017). Emulating Natural Product Conformation by Cooperative, Non-Covalent Fluorine Interactions. Chemistry (Weinheim an der Bergstrasse, Germany), 23(25), 6142-6149. https://doi.org/10.1002/chem.201604632
Scheidt, Felix, et al. "Emulating Natural Product Conformation by Cooperative, Non-Covalent Fluorine Interactions." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 23,25 (2017): 6142-6149. doi: https://doi.org/10.1002/chem.201604632
Scheidt F, Selter P, Santschi N, Holland MC, Dudenko DV, Daniliuc C, Mück-Lichtenfeld C, Hansen MR, Gilmour R. Emulating Natural Product Conformation by Cooperative, Non-Covalent Fluorine Interactions. Chemistry. 2017 May 02;23(25):6142-6149. doi: 10.1002/chem.201604632. Epub 2016 Nov 25. PMID: 27788283.
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