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Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries.

Genome announcements

Neiger R, Thomas M, Das S, Barnes M, Fletcher B, Snekvik K, Thompson J, Scaria J.
PMID: 26966210
Genome Announc. 2016 Mar 10;4(2). doi: 10.1128/genomeA.00035-16.

We report here the genome sequences of three Flavobacterium psychrophilum strains causing a bacterial coldwater disease (BCWD) outbreak, isolated from infected rainbow trout from hatcheries in Montana and South Dakota. The availability of these virulent outbreak-causing strain genome sequences...

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Neiger R, Thomas M, Das S, et al. Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries. Genome Announc. 2016;4(2)doi: 10.1128/genomeA.00035-16.
Neiger, R., Thomas, M., Das, S., Barnes, M., Fletcher, B., Snekvik, K., Thompson, J., & Scaria, J. (2016). Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries. Genome announcements, 4(2), . https://doi.org/10.1128/genomeA.00035-16
Neiger, Regg, et al. "Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries." Genome announcements vol. 4,2 (2016). doi: https://doi.org/10.1128/genomeA.00035-16
Neiger R, Thomas M, Das S, Barnes M, Fletcher B, Snekvik K, Thompson J, Scaria J. Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries. Genome Announc. 2016 Mar 10;4(2). doi: 10.1128/genomeA.00035-16. PMID: 26966210; PMCID: PMC4786645.
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Birth weight in patients with mucopolysaccharidosis type II: Data from the Hunter Outcome Survey (HOS).

Molecular genetics and metabolism reports

Bodamer O, Scarpa M, Hung C, Pulles T, Giugliani R.
PMID: 28516041
Mol Genet Metab Rep. 2017 May 03;11:62-64. doi: 10.1016/j.ymgmr.2017.02.004. eCollection 2017 Jun.

There is a need to identify early disease markers to facilitate diagnosis of mucopolysaccharidosis type II (MPS II; Hunter syndrome). Mean birth weight and its association with disease severity was investigated in 609 patients enrolled in the Hunter Outcome...

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Bodamer O, Scarpa M, Hung C, et al. Birth weight in patients with mucopolysaccharidosis type II: Data from the Hunter Outcome Survey (HOS). Mol Genet Metab Rep. 2017;11:62-64doi: 10.1016/j.ymgmr.2017.02.004.
Bodamer, O., Scarpa, M., Hung, C., Pulles, T., & Giugliani, R. (2017). Birth weight in patients with mucopolysaccharidosis type II: Data from the Hunter Outcome Survey (HOS). Molecular genetics and metabolism reports, 1162-64. https://doi.org/10.1016/j.ymgmr.2017.02.004
Bodamer, Olaf, et al. "Birth weight in patients with mucopolysaccharidosis type II: Data from the Hunter Outcome Survey (HOS)." Molecular genetics and metabolism reports vol. 11 (2017): 62-64. doi: https://doi.org/10.1016/j.ymgmr.2017.02.004
Bodamer O, Scarpa M, Hung C, Pulles T, Giugliani R. Birth weight in patients with mucopolysaccharidosis type II: Data from the Hunter Outcome Survey (HOS). Mol Genet Metab Rep. 2017 May 03;11:62-64. doi: 10.1016/j.ymgmr.2017.02.004. eCollection 2017 Jun. PMID: 28516041; PMCID: PMC5426030.
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Transfer Printed P3HT/PCBM Photoactive Layers: From Material Intermixing to Device Characteristics.

ACS applied materials & interfaces

Abdellah A, Falco A, Schwarzenberger U, Scarpa G, Lugli P.
PMID: 26754413
ACS Appl Mater Interfaces. 2016 Feb 03;8(4):2644-51. doi: 10.1021/acsami.5b10539. Epub 2016 Jan 21.

The fabrication of organic electronic devices involving complex stacks of solution-processable functional materials has proven challenging. Significant material intermixing often occurs as a result of cross-solubility and postdeposition treatments, rendering the realization of even the simplest bilayer architectures rather...

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Abdellah A, Falco A, Schwarzenberger U, et al. Transfer Printed P3HT/PCBM Photoactive Layers: From Material Intermixing to Device Characteristics. ACS Appl Mater Interfaces. 2016;8(4):2644-51doi: 10.1021/acsami.5b10539.
Abdellah, A., Falco, A., Schwarzenberger, U., Scarpa, G., & Lugli, P. (2016). Transfer Printed P3HT/PCBM Photoactive Layers: From Material Intermixing to Device Characteristics. ACS applied materials & interfaces, 8(4), 2644-51. https://doi.org/10.1021/acsami.5b10539
Abdellah, Alaa, et al. "Transfer Printed P3HT/PCBM Photoactive Layers: From Material Intermixing to Device Characteristics." ACS applied materials & interfaces vol. 8,4 (2016): 2644-51. doi: https://doi.org/10.1021/acsami.5b10539
Abdellah A, Falco A, Schwarzenberger U, Scarpa G, Lugli P. Transfer Printed P3HT/PCBM Photoactive Layers: From Material Intermixing to Device Characteristics. ACS Appl Mater Interfaces. 2016 Feb 03;8(4):2644-51. doi: 10.1021/acsami.5b10539. Epub 2016 Jan 21. PMID: 26754413.
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Mutations in the Mitochondrial Citrate Carrier SLC25A1 are Associated with Impaired Neuromuscular Transmission.

Journal of neuromuscular diseases

Chaouch A, Porcelli V, Cox D, Edvardson S, Scarcia P, De Grassi A, Pierri CL, Cossins J, Laval SH, Griffin H, Müller JS, Evangelista T, Töpf A, Abicht A, Huebner A, von der Hagen M, Bushby K, Straub V, Horvath R, Elpeleg O, Palace J, Senderek J, Beeson D, Palmieri L, Lochmüller H.
PMID: 26870663
J Neuromuscul Dis. 2014;1(1):75-90. doi: 10.3233/JND-140021.

BACKGROUND AND OBJECTIVE: Congenital myasthenic syndromes are rare inherited disorders characterized by fatigable weakness caused by malfunction of the neuromuscular junction. We performed whole exome sequencing to unravel the genetic aetiology in an English sib pair with clinical features...

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Chaouch A, Porcelli V, Cox D, et al. Mutations in the Mitochondrial Citrate Carrier SLC25A1 are Associated with Impaired Neuromuscular Transmission. J Neuromuscul Dis. 2014;1(1):75-90doi: 10.3233/JND-140021.
Chaouch, A., Porcelli, V., Cox, D., Edvardson, S., Scarcia, P., De Grassi, A., Pierri, C. L., Cossins, J., Laval, S. H., Griffin, H., Müller, J. S., Evangelista, T., Töpf, A., Abicht, A., Huebner, A., von der Hagen, M., Bushby, K., Straub, V., Horvath, R., Elpeleg, O., Palace, J., Senderek, J., Beeson, D., Palmieri, L., & Lochmüller, H. (2014). Mutations in the Mitochondrial Citrate Carrier SLC25A1 are Associated with Impaired Neuromuscular Transmission. Journal of neuromuscular diseases, 1(1), 75-90. https://doi.org/10.3233/JND-140021
Chaouch, Amina, et al. "Mutations in the Mitochondrial Citrate Carrier SLC25A1 are Associated with Impaired Neuromuscular Transmission." Journal of neuromuscular diseases vol. 1,1 (2014): 75-90. doi: https://doi.org/10.3233/JND-140021
Chaouch A, Porcelli V, Cox D, Edvardson S, Scarcia P, De Grassi A, Pierri CL, Cossins J, Laval SH, Griffin H, Müller JS, Evangelista T, Töpf A, Abicht A, Huebner A, von der Hagen M, Bushby K, Straub V, Horvath R, Elpeleg O, Palace J, Senderek J, Beeson D, Palmieri L, Lochmüller H. Mutations in the Mitochondrial Citrate Carrier SLC25A1 are Associated with Impaired Neuromuscular Transmission. J Neuromuscul Dis. 2014;1(1):75-90. doi: 10.3233/JND-140021. PMID: 26870663; PMCID: PMC4746751.
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Munchausen's Syndrome in Plastic Surgery: An Interdisciplinary Challenge.

Plastic and reconstructive surgery. Global open

Pavan C, Scarpa C, Bassetto F, Azzi M, Vindigni V.
PMID: 26180729
Plast Reconstr Surg Glob Open. 2015 Jul 08;3(6):e428. doi: 10.1097/GOX.0000000000000378. eCollection 2015 Jun.

Munchausen's syndrome is a rare psychiatric disease. We report a case in which we have collaborated with the psychiatrist for the diagnosis and also propose a diagnostic flowchart.

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Pavan C, Scarpa C, Bassetto F, et al. Munchausen's Syndrome in Plastic Surgery: An Interdisciplinary Challenge. Plast Reconstr Surg Glob Open. 2015;3(6):e428doi: 10.1097/GOX.0000000000000378.
Pavan, C., Scarpa, C., Bassetto, F., Azzi, M., & Vindigni, V. (2015). Munchausen's Syndrome in Plastic Surgery: An Interdisciplinary Challenge. Plastic and reconstructive surgery. Global open, 3(6), e428. https://doi.org/10.1097/GOX.0000000000000378
Pavan, Chiara, et al. "Munchausen's Syndrome in Plastic Surgery: An Interdisciplinary Challenge." Plastic and reconstructive surgery. Global open vol. 3,6 (2015): e428. doi: https://doi.org/10.1097/GOX.0000000000000378
Pavan C, Scarpa C, Bassetto F, Azzi M, Vindigni V. Munchausen's Syndrome in Plastic Surgery: An Interdisciplinary Challenge. Plast Reconstr Surg Glob Open. 2015 Jul 08;3(6):e428. doi: 10.1097/GOX.0000000000000378. eCollection 2015 Jun. PMID: 26180729; PMCID: PMC4494498.
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Quantification of intracellular payload release from polymersome nanoparticles.

Scientific reports

Scarpa E, Bailey JL, Janeczek AA, Stumpf PS, Johnston AH, Oreffo RO, Woo YL, Cheong YC, Evans ND, Newman TA.
PMID: 27404770
Sci Rep. 2016 Jul 11;6:29460. doi: 10.1038/srep29460.

Polymersome nanoparticles (PMs) are attractive candidates for spatio-temporal controlled delivery of therapeutic agents. Although many studies have addressed cellular uptake of solid nanoparticles, there is very little data available on intracellular release of molecules encapsulated in membranous carriers, such...

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Scarpa E, Bailey JL, Janeczek AA, et al. Quantification of intracellular payload release from polymersome nanoparticles. Sci Rep. 2016;6:29460doi: 10.1038/srep29460.
Scarpa, E., Bailey, J. L., Janeczek, A. A., Stumpf, P. S., Johnston, A. H., Oreffo, R. O., Woo, Y. L., Cheong, Y. C., Evans, N. D., & Newman, T. A. (2016). Quantification of intracellular payload release from polymersome nanoparticles. Scientific reports, 629460. https://doi.org/10.1038/srep29460
Scarpa, Edoardo, et al. "Quantification of intracellular payload release from polymersome nanoparticles." Scientific reports vol. 6 (2016): 29460. doi: https://doi.org/10.1038/srep29460
Scarpa E, Bailey JL, Janeczek AA, Stumpf PS, Johnston AH, Oreffo RO, Woo YL, Cheong YC, Evans ND, Newman TA. Quantification of intracellular payload release from polymersome nanoparticles. Sci Rep. 2016 Jul 11;6:29460. doi: 10.1038/srep29460. PMID: 27404770; PMCID: PMC4941396.
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Short-term Intravenous Antibiotic Treatment in Uncomplicated Diverticulitis Does Not Increase the Risk of Recurrence Compared to Long-term Treatment.

Annals of coloproctology

Scarpa CR, Buchs NC, Poncet A, Konrad-Mugnier B, Gervaz P, Morel P, Ris F.
PMID: 25960972
Ann Coloproctol. 2015 Apr;31(2):52-6. doi: 10.3393/ac.2015.31.2.52. Epub 2015 Apr 30.

PURPOSE: This study included all patients treated at the University Hospital of Geneva for a first episode of uncomplicated diverticulitis. Risks of recurrence and treatment failure were evaluated by comparing the results between short-course and long-course intravenous (IV) antibiotic...

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Scarpa CR, Buchs NC, Poncet A, et al. Short-term Intravenous Antibiotic Treatment in Uncomplicated Diverticulitis Does Not Increase the Risk of Recurrence Compared to Long-term Treatment. Ann Coloproctol. 2015;31(2):52-6doi: 10.3393/ac.2015.31.2.52.
Scarpa, C. R., Buchs, N. C., Poncet, A., Konrad-Mugnier, B., Gervaz, P., Morel, P., & Ris, F. (2015). Short-term Intravenous Antibiotic Treatment in Uncomplicated Diverticulitis Does Not Increase the Risk of Recurrence Compared to Long-term Treatment. Annals of coloproctology, 31(2), 52-6. https://doi.org/10.3393/ac.2015.31.2.52
Scarpa, Cosimo Riccardo, et al. "Short-term Intravenous Antibiotic Treatment in Uncomplicated Diverticulitis Does Not Increase the Risk of Recurrence Compared to Long-term Treatment." Annals of coloproctology vol. 31,2 (2015): 52-6. doi: https://doi.org/10.3393/ac.2015.31.2.52
Scarpa CR, Buchs NC, Poncet A, Konrad-Mugnier B, Gervaz P, Morel P, Ris F. Short-term Intravenous Antibiotic Treatment in Uncomplicated Diverticulitis Does Not Increase the Risk of Recurrence Compared to Long-term Treatment. Ann Coloproctol. 2015 Apr;31(2):52-6. doi: 10.3393/ac.2015.31.2.52. Epub 2015 Apr 30. PMID: 25960972; PMCID: PMC4422987.
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The effect of pentoxifylline on oxidative stress in chronic kidney disease patients with erythropoiesis-stimulating agent hyporesponsiveness: Sub-study of the HERO trial.

Redox report : communications in free radical research

Zhang L, Coombes J, Pascoe EM, Badve SV, Dalziel K, Cass A, Clarke P, Ferrari P, McDonald SP, Morrish AT, Pedagogos E, Perkovic V, Reidlinger D, Scaria A, Walker R, Vergara LA, Hawley CM, Johnson DW, On Behalf Of The Hero Study Collaborative Group.
PMID: 26083328
Redox Rep. 2016 Jan;21(1):14-23. doi: 10.1179/1351000215Y.0000000022. Epub 2016 Mar 04.

OBJECTIVE: Pentoxifylline has previously been shown to increase haemoglobin levels in patients with chronic kidney disease (CKD) and erythropoietin-stimulating agent (ESA)-hyporesponsive anaemia in the HERO multi-centre double-blind, randomized controlled trial. The present study evaluated the effects of pentoxifylline on...

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Zhang L, Coombes J, Pascoe EM, et al. The effect of pentoxifylline on oxidative stress in chronic kidney disease patients with erythropoiesis-stimulating agent hyporesponsiveness: Sub-study of the HERO trial. Redox Rep. 2016;21(1):14-23doi: 10.1179/1351000215Y.0000000022.
Zhang, L., Coombes, J., Pascoe, E. M., Badve, S. V., Dalziel, K., Cass, A., Clarke, P., Ferrari, P., McDonald, S. P., Morrish, A. T., Pedagogos, E., Perkovic, V., Reidlinger, D., Scaria, A., Walker, R., Vergara, L. A., Hawley, C. M., Johnson, D. W., & On Behalf Of The Hero Study Collaborative Group. (2016). The effect of pentoxifylline on oxidative stress in chronic kidney disease patients with erythropoiesis-stimulating agent hyporesponsiveness: Sub-study of the HERO trial. Redox report : communications in free radical research, 21(1), 14-23. https://doi.org/10.1179/1351000215Y.0000000022
Zhang, Lei, et al. "The effect of pentoxifylline on oxidative stress in chronic kidney disease patients with erythropoiesis-stimulating agent hyporesponsiveness: Sub-study of the HERO trial." Redox report : communications in free radical research vol. 21,1 (2016): 14-23. doi: https://doi.org/10.1179/1351000215Y.0000000022
Zhang L, Coombes J, Pascoe EM, Badve SV, Dalziel K, Cass A, Clarke P, Ferrari P, McDonald SP, Morrish AT, Pedagogos E, Perkovic V, Reidlinger D, Scaria A, Walker R, Vergara LA, Hawley CM, Johnson DW, On Behalf Of The Hero Study Collaborative Group. The effect of pentoxifylline on oxidative stress in chronic kidney disease patients with erythropoiesis-stimulating agent hyporesponsiveness: Sub-study of the HERO trial. Redox Rep. 2016 Jan;21(1):14-23. doi: 10.1179/1351000215Y.0000000022. Epub 2016 Mar 04. PMID: 26083328; PMCID: PMC6837737.
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Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset.

Interdisciplinary sciences, computational life sciences

Kaur H, Ahmad M, Scaria V.
PMID: 25595584
Interdiscip Sci. 2015 Jan 16; doi: 10.1007/s12539-014-0212-2. Epub 2015 Jan 16.

The emergence of multidrug resistant salmonella enterica serotype typhi in pandemic proportions throughout the world and therefore there is a necessity to speed up the discovery of novel molecules having different modes of action and also less influenced to...

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Kaur H, Ahmad M, Scaria V. Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset. Interdiscip Sci. 2015;doi: 10.1007/s12539-014-0212-2.
Kaur, H., Ahmad, M., & Scaria, V. (2015). Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset. Interdisciplinary sciences, computational life sciences, . https://doi.org/10.1007/s12539-014-0212-2
Kaur, Harleen, et al. "Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset." Interdisciplinary sciences, computational life sciences vol. (2015). doi: https://doi.org/10.1007/s12539-014-0212-2
Kaur H, Ahmad M, Scaria V. Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset. Interdiscip Sci. 2015 Jan 16; doi: 10.1007/s12539-014-0212-2. Epub 2015 Jan 16. PMID: 25595584.
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Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines.

PeerJ

Jamal S, Scaria V.
PMID: 25081126
PeerJ. 2014 Jul 17;2:e476. doi: 10.7717/peerj.476. eCollection 2014.

Background. Traditional Chinese medicine encompasses a well established alternate system of medicine based on a broad range of herbal formulations and is practiced extensively in the region for the treatment of a wide variety of diseases. In recent years,...

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Jamal S, Scaria V. Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines. PeerJ. 2014;2:e476doi: 10.7717/peerj.476.
Jamal, S., Scaria, V. (2014). Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines. PeerJ, 2e476. https://doi.org/10.7717/peerj.476
Jamal, Salma, et al. "Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines." PeerJ vol. 2 (2014): e476. doi: https://doi.org/10.7717/peerj.476
Jamal S, Scaria V. Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines. PeerJ. 2014 Jul 17;2:e476. doi: 10.7717/peerj.476. eCollection 2014. PMID: 25081126; PMCID: PMC4106188.
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The biological clock and the molecular basis of lysosomal storage diseases.

JIMD reports

Mazzoccoli G, Mazza T, Vinciguerra M, Castellana S, Scarpa M.
PMID: 25583520
JIMD Rep. 2015;18:93-105. doi: 10.1007/8904_2014_354. Epub 2015 Jan 13.

The lysosomal storage disorders encompass nearly fifty diseases provoked by lack or deficiency of enzymes essential for the breakdown of complex molecules and hallmarked by accumulation in the lysosomes of metabolic residues. Histochemistry and cytochemistry studies evidenced patterns of...

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Mazzoccoli G, Mazza T, Vinciguerra M, et al. The biological clock and the molecular basis of lysosomal storage diseases. JIMD Rep. 2015;18:93-105doi: 10.1007/8904_2014_354.
Mazzoccoli, G., Mazza, T., Vinciguerra, M., Castellana, S., & Scarpa, M. (2015). The biological clock and the molecular basis of lysosomal storage diseases. JIMD reports, 1893-105. https://doi.org/10.1007/8904_2014_354
Mazzoccoli, Gianluigi, et al. "The biological clock and the molecular basis of lysosomal storage diseases." JIMD reports vol. 18 (2015): 93-105. doi: https://doi.org/10.1007/8904_2014_354
Mazzoccoli G, Mazza T, Vinciguerra M, Castellana S, Scarpa M. The biological clock and the molecular basis of lysosomal storage diseases. JIMD Rep. 2015;18:93-105. doi: 10.1007/8904_2014_354. Epub 2015 Jan 13. PMID: 25583520; PMCID: PMC4361918.
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Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Genome announcements

Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T.
PMID: 25573926
Genome Announc. 2015 Jan 08;3(1). doi: 10.1128/genomeA.01321-14.

Halomonas salina strain CIFRI1 is an extremely salt-stress-tolerant bacterium isolated from the salt crystals of the east coast of India. Here we report the annotated 3.45-Mb draft genome sequence of strain CIFRI1 having 86 contigs with 3,139 protein coding...

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Behera BK, Das P, Maharana J, et al. Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India. Genome Announc. 2015;3(1)doi: 10.1128/genomeA.01321-14.
Behera, B. K., Das, P., Maharana, J., Paria, P., Mandal, S. N., Meena, D. K., Sharma, A. P., Jayarajan, R., Dixit, V., Verma, A., Vellarikkal, S. K., Scaria, V., Sivasubbu, S., Rao, A. R., & Mohapatra, T. (2015). Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India. Genome announcements, 3(1), . https://doi.org/10.1128/genomeA.01321-14
Behera, Bijay Kumar, et al. "Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India." Genome announcements vol. 3,1 (2015). doi: https://doi.org/10.1128/genomeA.01321-14
Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T. Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India. Genome Announc. 2015 Jan 08;3(1). doi: 10.1128/genomeA.01321-14. PMID: 25573926; PMCID: PMC4290979.
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