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Genescript: DNA sequence annotation pipeline

pipeline programs

Hudek AK, Cheung J, Scherer SW.
GSID: 20cAD3e-FbYJ
AK Hudek, J Cheung, AP Boright, SW Scherer - Bioinformatics, 2003 - academic.oup.com

… Summary: Genescript uses a number of publicly available analysis programs to annotate a DNA sequence. It provides an integrated display of results from each program, and includes an evidence-based scoring system that gives informative summaries of predicted gene...

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Hudek, A. K., Cheung, J., Boright, A. P., & Scherer, S. W. (2003). Genescript: DNA sequence annotation pipeline. Bioinformatics, 19(9), 1177-1178.
Hudek, Alexander K., et al. "Genescript: DNA sequence annotation pipeline." Bioinformatics 19.9 (2003): 1177-1178.
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Efficacy of Chlorantraniliprole in Controlling Structural Infestations of the Eastern Subterranean Termite in the USA.

Insects

Jones SC, Vargo EL, Keefer TC, Labadie P, Scherer CW, Gallagher NT, Gold RE.
PMID: 28858226
Insects. 2017 Aug 31;8(3). doi: 10.3390/insects8030092.

Subterranean termites are the most economically important structural pests in the USA, and the eastern subterranean termite,

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Jones SC, Vargo EL, Keefer TC, et al. Efficacy of Chlorantraniliprole in Controlling Structural Infestations of the Eastern Subterranean Termite in the USA. Insects. 2017;8(3)doi: 10.3390/insects8030092.
Jones, S. C., Vargo, E. L., Keefer, T. C., Labadie, P., Scherer, C. W., Gallagher, N. T., & Gold, R. E. (2017). Efficacy of Chlorantraniliprole in Controlling Structural Infestations of the Eastern Subterranean Termite in the USA. Insects, 8(3), . https://doi.org/10.3390/insects8030092
Jones, Susan C, et al. "Efficacy of Chlorantraniliprole in Controlling Structural Infestations of the Eastern Subterranean Termite in the USA." Insects vol. 8,3 (2017). doi: https://doi.org/10.3390/insects8030092
Jones SC, Vargo EL, Keefer TC, Labadie P, Scherer CW, Gallagher NT, Gold RE. Efficacy of Chlorantraniliprole in Controlling Structural Infestations of the Eastern Subterranean Termite in the USA. Insects. 2017 Aug 31;8(3). doi: 10.3390/insects8030092. PMID: 28858226; PMCID: PMC5620712.
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Future imaging of atherosclerosis: molecular imaging of coronary atherosclerosis with (18)F positron emission tomography.

Cardiovascular diagnosis and therapy

Scherer DJ, Psaltis PJ.
PMID: 27500093
Cardiovasc Diagn Ther. 2016 Aug;6(4):354-67. doi: 10.21037/cdt.2015.12.02.

Atherosclerosis is characterized by the formation of complex atheroma lesions (plaques) in arteries that pose risk by their flow-limiting nature and propensity for rupture and thrombotic occlusion. It develops in the context of disturbances to lipid metabolism and immune...

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Scherer DJ, Psaltis PJ. Future imaging of atherosclerosis: molecular imaging of coronary atherosclerosis with (18)F positron emission tomography. Cardiovasc Diagn Ther. 2016;6(4):354-67doi: 10.21037/cdt.2015.12.02.
Scherer, D. J., & Psaltis, P. J. (2016). Future imaging of atherosclerosis: molecular imaging of coronary atherosclerosis with (18)F positron emission tomography. Cardiovascular diagnosis and therapy, 6(4), 354-67. https://doi.org/10.21037/cdt.2015.12.02
Scherer, Daniel J, and Psaltis, Peter J. "Future imaging of atherosclerosis: molecular imaging of coronary atherosclerosis with (18)F positron emission tomography." Cardiovascular diagnosis and therapy vol. 6,4 (2016): 354-67. doi: https://doi.org/10.21037/cdt.2015.12.02
Scherer DJ, Psaltis PJ. Future imaging of atherosclerosis: molecular imaging of coronary atherosclerosis with (18)F positron emission tomography. Cardiovasc Diagn Ther. 2016 Aug;6(4):354-67. doi: 10.21037/cdt.2015.12.02. PMID: 27500093; PMCID: PMC4960068.
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Control of Mucosal Candidiasis in the Zebrafish Swim Bladder Depends on Neutrophils That Block Filament Invasion and Drive Extracellular-Trap Production.

Infection and immunity

Gratacap RL, Scherer AK, Seman BG, Wheeler RT.
PMID: 28607100
Infect Immun. 2017 Aug 18;85(9). doi: 10.1128/IAI.00276-17. Print 2017 Sep.

No abstract available.

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Gratacap RL, Scherer AK, Seman BG, et al. Control of Mucosal Candidiasis in the Zebrafish Swim Bladder Depends on Neutrophils That Block Filament Invasion and Drive Extracellular-Trap Production. Infect Immun. 2017;85(9)doi: 10.1128/IAI.00276-17.
Gratacap, R. L., Scherer, A. K., Seman, B. G., & Wheeler, R. T. (2017). Control of Mucosal Candidiasis in the Zebrafish Swim Bladder Depends on Neutrophils That Block Filament Invasion and Drive Extracellular-Trap Production. Infection and immunity, 85(9), . https://doi.org/10.1128/IAI.00276-17
Gratacap, Remi L, et al. "Control of Mucosal Candidiasis in the Zebrafish Swim Bladder Depends on Neutrophils That Block Filament Invasion and Drive Extracellular-Trap Production." Infection and immunity vol. 85,9 (2017). doi: https://doi.org/10.1128/IAI.00276-17
Gratacap RL, Scherer AK, Seman BG, Wheeler RT. Control of Mucosal Candidiasis in the Zebrafish Swim Bladder Depends on Neutrophils That Block Filament Invasion and Drive Extracellular-Trap Production. Infect Immun. 2017 Aug 18;85(9). doi: 10.1128/IAI.00276-17. Print 2017 Sep. PMID: 28607100; PMCID: PMC5563567.
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Cloning of a DSS1 pseudogene (DSS1P1) and mapping to human Chromosome band 5ql4.

Mammalian genome : official journal of the International Mammalian Genome Society

Crackower MA, Scherer SW, Heng HH, Tsui LC.
PMID: 27518309
Mamm Genome. 1997 Feb;8(2):159-60. doi: 10.1007/s003359900380.

No abstract available.

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Crackower MA, Scherer SW, Heng HH, et al. Cloning of a DSS1 pseudogene (DSS1P1) and mapping to human Chromosome band 5ql4. Mamm Genome. 1997;8(2):159-60doi: 10.1007/s003359900380.
Crackower, M. A., Scherer, S. W., Heng, H. H., & Tsui, L. C. (1997). Cloning of a DSS1 pseudogene (DSS1P1) and mapping to human Chromosome band 5ql4. Mammalian genome : official journal of the International Mammalian Genome Society, 8(2), 159-60. https://doi.org/10.1007/s003359900380
Crackower, M A, et al. "Cloning of a DSS1 pseudogene (DSS1P1) and mapping to human Chromosome band 5ql4." Mammalian genome : official journal of the International Mammalian Genome Society vol. 8,2 (1997): 159-60. doi: https://doi.org/10.1007/s003359900380
Crackower MA, Scherer SW, Heng HH, Tsui LC. Cloning of a DSS1 pseudogene (DSS1P1) and mapping to human Chromosome band 5ql4. Mamm Genome. 1997 Feb;8(2):159-60. doi: 10.1007/s003359900380. PMID: 27518309.
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From genome to toxicity: a combinatory approach highlights the complexity of enterotoxin production in Bacillus cereus.

Frontiers in microbiology

Jeßberger N, Krey VM, Rademacher C, Böhm ME, Mohr AK, Ehling-Schulz M, Scherer S, Märtlbauer E.
PMID: 26113843
Front Microbiol. 2015 Jun 10;6:560. doi: 10.3389/fmicb.2015.00560. eCollection 2015.

In recent years Bacillus cereus has gained increasing importance as a food poisoning pathogen. It is the eponymous member of the B. cereus sensu lato group that consists of eight closely related species showing impressive diversity of their pathogenicity....

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Jeßberger N, Krey VM, Rademacher C, et al. From genome to toxicity: a combinatory approach highlights the complexity of enterotoxin production in Bacillus cereus. Front Microbiol. 2015;6:560doi: 10.3389/fmicb.2015.00560.
Jeßberger, N., Krey, V. M., Rademacher, C., Böhm, M. E., Mohr, A. K., Ehling-Schulz, M., Scherer, S., & Märtlbauer, E. (2015). From genome to toxicity: a combinatory approach highlights the complexity of enterotoxin production in Bacillus cereus. Frontiers in microbiology, 6560. https://doi.org/10.3389/fmicb.2015.00560
Jeßberger, Nadja, et al. "From genome to toxicity: a combinatory approach highlights the complexity of enterotoxin production in Bacillus cereus." Frontiers in microbiology vol. 6 (2015): 560. doi: https://doi.org/10.3389/fmicb.2015.00560
Jeßberger N, Krey VM, Rademacher C, Böhm ME, Mohr AK, Ehling-Schulz M, Scherer S, Märtlbauer E. From genome to toxicity: a combinatory approach highlights the complexity of enterotoxin production in Bacillus cereus. Front Microbiol. 2015 Jun 10;6:560. doi: 10.3389/fmicb.2015.00560. eCollection 2015. PMID: 26113843; PMCID: PMC4462024.
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[Psychiatric nursing consultation and liaison: how do nurses understand this activity?].

Revista latino-americana de enfermagem

Scherer ZA, Scherer EA, Labate RC.
PMID: 12080591
Rev Lat Am Enfermagem. 2002 Jan-Feb;10(1):7-14.

This research aimed at identifying the knowledge of nurses working in medical and surgical clinics and with burned patients as to psychiatric nursing consultation by means of a semi-structured interview. Care situations considered to be difficult were related to...

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Scherer ZA, Scherer EA, Labate RC. Interconsulta em enfermagem psiquiátrica: qual a compreensão do enfermeiro sobre esta atividade? [Psychiatric nursing consultation and liaison: how do nurses understand this activity?]. Rev Lat Am Enfermagem. 2002;10(1):7-14
Scherer, Z. A., Scherer, E. A., & Labate, R. C. (2002). Interconsulta em enfermagem psiquiátrica: qual a compreensão do enfermeiro sobre esta atividade? [Psychiatric nursing consultation and liaison: how do nurses understand this activity?]. Revista latino-americana de enfermagem, 10(1), 7-14.
Scherer, Zeyne Alves Pires, et al. "Interconsulta em enfermagem psiquiátrica: qual a compreensão do enfermeiro sobre esta atividade?" [Psychiatric nursing consultation and liaison: how do nurses understand this activity?]. Revista latino-americana de enfermagem vol. 10,1 (2002): 7-14.
Scherer ZA, Scherer EA, Labate RC. Interconsulta em enfermagem psiquiátrica: qual a compreensão do enfermeiro sobre esta atividade? [Psychiatric nursing consultation and liaison: how do nurses understand this activity?]. Rev Lat Am Enfermagem. 2002 Jan-Feb;10(1):7-14. Portuguese. PMID: 12080591.
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High tetraalkylaluminate fluxionality in half-sandwich complexes of the trivalent rare-earth metals.

Chemical communications (Cambridge, England)

Anwander R, Klimpel MG, Dietrich HM, Shorokhov DJ, Scherer W.
PMID: 12744343
Chem Commun (Camb). 2003 Apr 21;(8):1008-9. doi: 10.1039/b212754g.

Steric factors govern the formation of half-sandwich complexes (C5Me4R)Ln[N(SiHMe2)2]2 according to acid-base reactions utilising Ln[N(SiHMe2)2)3(thf)2 and substituted cyclopentadienes. Subsequent trimethylaluminium-promoted silylamide elimination produces the first half-sandwich bis(tetramethylaluminate) complexes (C5Me4R)Ln(AlMe4)2.

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Anwander R, Klimpel MG, Dietrich HM, et al. High tetraalkylaluminate fluxionality in half-sandwich complexes of the trivalent rare-earth metals. Chem Commun (Camb). 2003;(8):1008-9doi: 10.1039/b212754g.
Anwander, R., Klimpel, M. G., Dietrich, H. M., Shorokhov, D. J., & Scherer, W. (2003). High tetraalkylaluminate fluxionality in half-sandwich complexes of the trivalent rare-earth metals. Chemical communications (Cambridge, England), (8), 1008-9. https://doi.org/10.1039/b212754g
Anwander, Reiner, et al. "High tetraalkylaluminate fluxionality in half-sandwich complexes of the trivalent rare-earth metals." Chemical communications (Cambridge, England) vol. ,8 (2003): 1008-9. doi: https://doi.org/10.1039/b212754g
Anwander R, Klimpel MG, Dietrich HM, Shorokhov DJ, Scherer W. High tetraalkylaluminate fluxionality in half-sandwich complexes of the trivalent rare-earth metals. Chem Commun (Camb). 2003 Apr 21;(8):1008-9. doi: 10.1039/b212754g. PMID: 12744343.
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Entanglement between an electron and a nuclear spin 1/2.

Physical review letters

Mehring M, Mende J, Scherer W.
PMID: 12732030
Phys Rev Lett. 2003 Apr 18;90(15):153001. doi: 10.1103/PhysRevLett.90.153001. Epub 2003 Apr 15.

We report on the preparation and detection of entangled states between an electron spin 1/2 and a nuclear spin 1/2 in a molecular single crystal. These were created by applying pulses at ESR (9.5 GHz) and NMR (21 MHz,...

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Mehring M, Mende J, Scherer W. Entanglement between an electron and a nuclear spin 1/2. Phys Rev Lett. 2003;90(15):153001doi: 10.1103/PhysRevLett.90.153001.
Mehring, M., Mende, J., & Scherer, W. (2003). Entanglement between an electron and a nuclear spin 1/2. Physical review letters, 90(15), 153001. https://doi.org/10.1103/PhysRevLett.90.153001
Mehring, M, et al. "Entanglement between an electron and a nuclear spin 1/2." Physical review letters vol. 90,15 (2003): 153001. doi: https://doi.org/10.1103/PhysRevLett.90.153001
Mehring M, Mende J, Scherer W. Entanglement between an electron and a nuclear spin 1/2. Phys Rev Lett. 2003 Apr 18;90(15):153001. doi: 10.1103/PhysRevLett.90.153001. Epub 2003 Apr 15. PMID: 12732030.
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Agostic interactions in d0 metal alkyl complexes.

Angewandte Chemie (International ed. in English)

Scherer W, McGrady GS.
PMID: 15054779
Angew Chem Int Ed Engl. 2004 Mar 26;43(14):1782-806. doi: 10.1002/anie.200200548.

The phenomenon of agostic interactions is reviewed and the nature of the interaction is revisited. A historical perspective is followed by an overview of experimental techniques used to diagnose agostic behavior, and previous interpretations of agostic bonding are presented....

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Scherer W, McGrady GS. Agostic interactions in d0 metal alkyl complexes. Angew Chem Int Ed Engl. 2004;43(14):1782-806doi: 10.1002/anie.200200548.
Scherer, W., & McGrady, G. S. (2004). Agostic interactions in d0 metal alkyl complexes. Angewandte Chemie (International ed. in English), 43(14), 1782-806. https://doi.org/10.1002/anie.200200548
Scherer, Wolfgang, and McGrady, G Sean. "Agostic interactions in d0 metal alkyl complexes." Angewandte Chemie (International ed. in English) vol. 43,14 (2004): 1782-806. doi: https://doi.org/10.1002/anie.200200548
Scherer W, McGrady GS. Agostic interactions in d0 metal alkyl complexes. Angew Chem Int Ed Engl. 2004 Mar 26;43(14):1782-806. doi: 10.1002/anie.200200548. PMID: 15054779.
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A New UV-A/B Protecting Pigment in the Terrestrial Cyanobacterium Nostoc commune.

Plant physiology

Scherer S, Chen TW, Böger P.
PMID: 16666420
Plant Physiol. 1988 Dec;88(4):1055-7. doi: 10.1104/pp.88.4.1055.

A new ultraviolet (UV)-A/B absorbing pigment with maxima at 312 and 330 nanometers from the cosmopolitan terrestrial cyanobacterium Nostoc commune is described. The pigment is found in high amounts (up to 10% of dry weight) in colonies grown under...

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Scherer S, Chen TW, Böger P. A New UV-A/B Protecting Pigment in the Terrestrial Cyanobacterium Nostoc commune. Plant Physiol. 1988;88(4):1055-7doi: 10.1104/pp.88.4.1055.
Scherer, S., Chen, T. W., & Böger, P. (1988). A New UV-A/B Protecting Pigment in the Terrestrial Cyanobacterium Nostoc commune. Plant physiology, 88(4), 1055-7. https://doi.org/10.1104/pp.88.4.1055
Scherer, S, et al. "A New UV-A/B Protecting Pigment in the Terrestrial Cyanobacterium Nostoc commune." Plant physiology vol. 88,4 (1988): 1055-7. doi: https://doi.org/10.1104/pp.88.4.1055
Scherer S, Chen TW, Böger P. A New UV-A/B Protecting Pigment in the Terrestrial Cyanobacterium Nostoc commune. Plant Physiol. 1988 Dec;88(4):1055-7. doi: 10.1104/pp.88.4.1055. PMID: 16666420; PMCID: PMC1055714.
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Effect of Monochromatic Light on Proton Efflux of the Blue-Green Alga Anabaena variabilis.

Plant physiology

Scherer S, Hinrichs I, Böger P.
PMID: 16664932
Plant Physiol. 1986 Jul;81(3):939-41. doi: 10.1104/pp.81.3.939.

Light-induced proton efflux of Anabaena variabilis was found to be biphasic, the second phase being inhibited by the ATPase inhibitor nitrofen (2,4-dichloro-1-[4-nitrophenoxy]benzene). The first, fast phase was triggered by monochromatic light of 707 nanometers, whereas the second, slower phase...

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Scherer S, Hinrichs I, Böger P. Effect of Monochromatic Light on Proton Efflux of the Blue-Green Alga Anabaena variabilis. Plant Physiol. 1986;81(3):939-41doi: 10.1104/pp.81.3.939.
Scherer, S., Hinrichs, I., & Böger, P. (1986). Effect of Monochromatic Light on Proton Efflux of the Blue-Green Alga Anabaena variabilis. Plant physiology, 81(3), 939-41. https://doi.org/10.1104/pp.81.3.939
Scherer, S, et al. "Effect of Monochromatic Light on Proton Efflux of the Blue-Green Alga Anabaena variabilis." Plant physiology vol. 81,3 (1986): 939-41. doi: https://doi.org/10.1104/pp.81.3.939
Scherer S, Hinrichs I, Böger P. Effect of Monochromatic Light on Proton Efflux of the Blue-Green Alga Anabaena variabilis. Plant Physiol. 1986 Jul;81(3):939-41. doi: 10.1104/pp.81.3.939. PMID: 16664932; PMCID: PMC1075457.
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Showing 1 to 12 of 328 entries