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Estimating gene regulatory networks with pandaR.

Bioinformatics (Oxford, England)

Schlauch D, Paulson JN, Young A, Glass K, Quackenbush J.
PMID: 28334344
Bioinformatics. 2017 Jul 15;33(14):2232-2234. doi: 10.1093/bioinformatics/btx139.

CONTACT: [email protected] or [email protected] AND IMPLEMENTATION: PandaR is provided as a Bioconductor R Package and is available at bioconductor.org/packages/pandaR.

Cite
Schlauch D, Paulson JN, Young A, et al. Estimating gene regulatory networks with pandaR. Bioinformatics. 2017;33(14):2232-2234doi: 10.1093/bioinformatics/btx139.
Schlauch, D., Paulson, J. N., Young, A., Glass, K., & Quackenbush, J. (2017). Estimating gene regulatory networks with pandaR. Bioinformatics (Oxford, England), 33(14), 2232-2234. https://doi.org/10.1093/bioinformatics/btx139
Schlauch, Daniel, et al. "Estimating gene regulatory networks with pandaR." Bioinformatics (Oxford, England) vol. 33,14 (2017): 2232-2234. doi: https://doi.org/10.1093/bioinformatics/btx139
Schlauch D, Paulson JN, Young A, Glass K, Quackenbush J. Estimating gene regulatory networks with pandaR. Bioinformatics. 2017 Jul 15;33(14):2232-2234. doi: 10.1093/bioinformatics/btx139. PMID: 28334344; PMCID: PMC5870629.
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Reductive and brominative termination of alkenol cyclization in aerobic cobalt-catalyzed reactions.

Journal of the American Chemical Society

Schuch D, Fries P, Dönges M, Menéndez Pérez B, Hartung J.
PMID: 19694429
J Am Chem Soc. 2009 Sep 16;131(36):12918-20. doi: 10.1021/ja904577c.

Tetrahydrofur-2-ylmethyl radicals were stereoselectively generated from substituted pent-4-en-1-ols in aerobic cobalt(II)-catalyzed oxidations. Intermediates were trapped with cyclohexa-1,4-diene, gamma-terpinene, BrCCl(3), diethyl dibromomalonate, or electron-deficient olefins such as acrylonitrile or dimethyl fumarate to afford functionalized tetrahydrofurans in synthetically useful yields.

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Schuch D, Fries P, Dönges M, et al. Reductive and brominative termination of alkenol cyclization in aerobic cobalt-catalyzed reactions. J Am Chem Soc. 2009;131(36):12918-20doi: 10.1021/ja904577c.
Schuch, D., Fries, P., Dönges, M., Menéndez Pérez, B., & Hartung, J. (2009). Reductive and brominative termination of alkenol cyclization in aerobic cobalt-catalyzed reactions. Journal of the American Chemical Society, 131(36), 12918-20. https://doi.org/10.1021/ja904577c
Schuch, Dominik, et al. "Reductive and brominative termination of alkenol cyclization in aerobic cobalt-catalyzed reactions." Journal of the American Chemical Society vol. 131,36 (2009): 12918-20. doi: https://doi.org/10.1021/ja904577c
Schuch D, Fries P, Dönges M, Menéndez Pérez B, Hartung J. Reductive and brominative termination of alkenol cyclization in aerobic cobalt-catalyzed reactions. J Am Chem Soc. 2009 Sep 16;131(36):12918-20. doi: 10.1021/ja904577c. PMID: 19694429.
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Activation of molecular oxygen and its use in stereoselective tetrahydrofuran-syntheses from delta,epsilon-unsaturated alcohols.

Organic & biomolecular chemistry

Menéndez Pérez B, Schuch D, Hartung J.
PMID: 19082154
Org Biomol Chem. 2008 Oct 07;6(19):3532-41. doi: 10.1039/b804588g. Epub 2008 Jul 16.

Bishomoallylic alcohols (pent-4-en-1-ols) underwent efficient oxidative cyclizations, if treated with O(2) and bis{2,2,2-trifluoromethyl-1-[(1R,4S)-1,7,7-trimethyl-2-(oxo-kappaO)bicyclo[2.2.1]hept-3-yliden]ethanolato-kappaO}cobalt(ii) in solutions of 2-propanol at 60 degrees C. Ring closures occurred diastereoselectively and afforded 2,3-trans- (96% de), 2,4-cis- (approximately 60% de), and 2,5-trans-substituted (>99% de) (phenyl)tetrahydrofur-2-ylmethanols...

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Menéndez Pérez B, Schuch D, Hartung J. Activation of molecular oxygen and its use in stereoselective tetrahydrofuran-syntheses from delta,epsilon-unsaturated alcohols. Org Biomol Chem. 2008;6(19):3532-41doi: 10.1039/b804588g.
Menéndez Pérez, B., Schuch, D., & Hartung, J. (2008). Activation of molecular oxygen and its use in stereoselective tetrahydrofuran-syntheses from delta,epsilon-unsaturated alcohols. Organic & biomolecular chemistry, 6(19), 3532-41. https://doi.org/10.1039/b804588g
Menéndez Pérez, Bárbara, et al. "Activation of molecular oxygen and its use in stereoselective tetrahydrofuran-syntheses from delta,epsilon-unsaturated alcohols." Organic & biomolecular chemistry vol. 6,19 (2008): 3532-41. doi: https://doi.org/10.1039/b804588g
Menéndez Pérez B, Schuch D, Hartung J. Activation of molecular oxygen and its use in stereoselective tetrahydrofuran-syntheses from delta,epsilon-unsaturated alcohols. Org Biomol Chem. 2008 Oct 07;6(19):3532-41. doi: 10.1039/b804588g. Epub 2008 Jul 16. PMID: 19082154.
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Self-recovering stimuli-responsive macrocycle-equipped supramolecular ionogels with unusual mechanical properties.

Organic & biomolecular chemistry

Qi Z, Traulsen NL, Malo de Molina P, Schlaich C, Gradzielski M, Schalley CA.
PMID: 24280910
Org Biomol Chem. 2014 Jan 21;12(3):503-10. doi: 10.1039/c3ob41523f. Epub 2013 Nov 27.

A chiral, crown-ether-functionalized bisurea gelator forms supramolecular gels in ionic liquids. The resulting ionogels show a remarkably high thermal stability with gel-sol transition temperatures (T(gs)) reaching more than 100 °C. The mechanical strength of these ionogels is surprisingly high...

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Qi Z, Traulsen NL, Malo de Molina P, et al. Self-recovering stimuli-responsive macrocycle-equipped supramolecular ionogels with unusual mechanical properties. Org Biomol Chem. 2013;12(3):503-10doi: 10.1039/c3ob41523f.
Qi, Z., Traulsen, N. L., Malo de Molina, P., Schlaich, C., Gradzielski, M., & Schalley, C. A. (2014). Self-recovering stimuli-responsive macrocycle-equipped supramolecular ionogels with unusual mechanical properties. Organic & biomolecular chemistry, 12(3), 503-10. https://doi.org/10.1039/c3ob41523f
Qi, Zhenhui, et al. "Self-recovering stimuli-responsive macrocycle-equipped supramolecular ionogels with unusual mechanical properties." Organic & biomolecular chemistry vol. 12,3 (2014): 503-10. doi: https://doi.org/10.1039/c3ob41523f
Qi Z, Traulsen NL, Malo de Molina P, Schlaich C, Gradzielski M, Schalley CA. Self-recovering stimuli-responsive macrocycle-equipped supramolecular ionogels with unusual mechanical properties. Org Biomol Chem. 2014 Jan 21;12(3):503-10. doi: 10.1039/c3ob41523f. Epub 2013 Nov 27. PMID: 24280910.
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Two-color gauge theory with novel infrared behavior.

Physical review letters

Appelquist T, Brower RC, Buchoff MI, Cheng M, Fleming GT, Kiskis J, Lin MF, Neil ET, Osborn JC, Rebbi C, Schaich D, Schroeder C, Syritsyn S, Voronov G, Vranas P, Witzel O.
PMID: 24702347
Phys Rev Lett. 2014 Mar 21;112(11):111601. doi: 10.1103/PhysRevLett.112.111601. Epub 2014 Mar 18.

Using lattice simulations, we study the infrared behavior of a particularly interesting SU(2) gauge theory, with six massless Dirac fermions in the fundamental representation. We compute the running gauge coupling derived nonperturbatively from the Schrödinger functional of the theory,...

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Appelquist T, Brower RC, Buchoff MI, et al. Two-color gauge theory with novel infrared behavior. Phys Rev Lett. 2014;112(11):111601doi: 10.1103/PhysRevLett.112.111601.
Appelquist, T., Brower, R. C., Buchoff, M. I., Cheng, M., Fleming, G. T., Kiskis, J., Lin, M. F., Neil, E. T., Osborn, J. C., Rebbi, C., Schaich, D., Schroeder, C., Syritsyn, S., Voronov, G., Vranas, P., Witzel, O. (2014). Two-color gauge theory with novel infrared behavior. Physical review letters, 112(11), 111601. https://doi.org/10.1103/PhysRevLett.112.111601
Appelquist, T, et al. "Two-color gauge theory with novel infrared behavior." Physical review letters vol. 112,11 (2014): 111601. doi: https://doi.org/10.1103/PhysRevLett.112.111601
Appelquist T, Brower RC, Buchoff MI, Cheng M, Fleming GT, Kiskis J, Lin MF, Neil ET, Osborn JC, Rebbi C, Schaich D, Schroeder C, Syritsyn S, Voronov G, Vranas P, Witzel O. Two-color gauge theory with novel infrared behavior. Phys Rev Lett. 2014 Mar 21;112(11):111601. doi: 10.1103/PhysRevLett.112.111601. Epub 2014 Mar 18. PMID: 24702347.
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Microstructure and Flux Pinning of Reacted-and-Pressed, Polycrystalline Ba.

Materials (Basel, Switzerland)

Koblischka MR, Koblischka-Veneva A, Schmauch J, Murakami M.
PMID: 31284570
Materials (Basel). 2019 Jul 06;12(13). doi: 10.3390/ma12132173.

The flux pinning properties of reacted-and-pressed Ba

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Koblischka MR, Koblischka-Veneva A, Schmauch J, et al. Microstructure and Flux Pinning of Reacted-and-Pressed, Polycrystalline Ba. Materials (Basel). 2019;12(13)doi: 10.3390/ma12132173.
Koblischka, M. R., Koblischka-Veneva, A., Schmauch, J., & Murakami, M. (2019). Microstructure and Flux Pinning of Reacted-and-Pressed, Polycrystalline Ba. Materials (Basel, Switzerland), 12(13), . https://doi.org/10.3390/ma12132173
Koblischka, Michael R, et al. "Microstructure and Flux Pinning of Reacted-and-Pressed, Polycrystalline Ba." Materials (Basel, Switzerland) vol. 12,13 (2019). doi: https://doi.org/10.3390/ma12132173
Koblischka MR, Koblischka-Veneva A, Schmauch J, Murakami M. Microstructure and Flux Pinning of Reacted-and-Pressed, Polycrystalline Ba. Materials (Basel). 2019 Jul 06;12(13). doi: 10.3390/ma12132173. PMID: 31284570; PMCID: PMC6651224.
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LC/MS/MS data analysis of the human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor.

Data in brief

Ulrich CC, Quilici DR, Schlauch KA, Burkin HR, Buxton IL.
PMID: 26322325
Data Brief. 2015 Aug 01;4:591-4. doi: 10.1016/j.dib.2015.07.031. eCollection 2015 Sep.

The data described in this article is the subject of an article in the American Journal of Physiology: Cell Physiology, titled "The Human Uterine Smooth Muscle S-nitrosoproteome Fingerprint in Pregnancy, Labor, and Preterm Labor" (doi:10.1152/ajpcell.00198.2013) (Ulrich et al., 2013)...

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Ulrich CC, Quilici DR, Schlauch KA, et al. LC/MS/MS data analysis of the human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor. Data Brief. 2015;4:591-4doi: 10.1016/j.dib.2015.07.031.
Ulrich, C. C., Quilici, D. R., Schlauch, K. A., Burkin, H. R., & Buxton, I. L. (2015). LC/MS/MS data analysis of the human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor. Data in brief, 4591-4. https://doi.org/10.1016/j.dib.2015.07.031
Ulrich, Craig C, et al. "LC/MS/MS data analysis of the human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor." Data in brief vol. 4 (2015): 591-4. doi: https://doi.org/10.1016/j.dib.2015.07.031
Ulrich CC, Quilici DR, Schlauch KA, Burkin HR, Buxton IL. LC/MS/MS data analysis of the human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor. Data Brief. 2015 Aug 01;4:591-4. doi: 10.1016/j.dib.2015.07.031. eCollection 2015 Sep. PMID: 26322325; PMCID: PMC4543089.
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The transdiagnostic role of food craving: An application of substance use models.

Appetite

Verzijl CL, Gius B, Schlauch R, Rancourt D.
PMID: 34915105
Appetite. 2021 Dec 13;170:105867. doi: 10.1016/j.appet.2021.105867. Epub 2021 Dec 13.

Food craving is a transdiagnostic process underlying clinically significant disordered eating behaviors and eating disorder diagnoses. However, the lack of literature examining the role of food craving as it relates to the full spectrum of disordered eating behaviors, including...

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Verzijl CL, Gius B, Schlauch R, et al. The transdiagnostic role of food craving: An application of substance use models. Appetite. 2021;170:105867doi: 10.1016/j.appet.2021.105867.
Verzijl, C. L., Gius, B., Schlauch, R., & Rancourt, D. (2021). The transdiagnostic role of food craving: An application of substance use models. Appetite, 170105867. https://doi.org/10.1016/j.appet.2021.105867
Verzijl, Christina L, et al. "The transdiagnostic role of food craving: An application of substance use models." Appetite vol. 170 (2021): 105867. doi: https://doi.org/10.1016/j.appet.2021.105867
Verzijl CL, Gius B, Schlauch R, Rancourt D. The transdiagnostic role of food craving: An application of substance use models. Appetite. 2021 Dec 13;170:105867. doi: 10.1016/j.appet.2021.105867. Epub 2021 Dec 13. PMID: 34915105.
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Correction to "Construction of Functional Coating with Durable and Broad-Spectrum Antibacterial Potential Based on Mussel-Inspired Dendritic Polyglycerol and In Situ-Formed Copper Nanoparticles".

ACS applied materials & interfaces

Li M, Gao L, Schlaich C, Zhang J, Donskyi IS, Yu G, Li W, Tu Z, Rolff J, Schwerdtle T, Haag R, Ma N.
PMID: 33275402
ACS Appl Mater Interfaces. 2020 Dec 16;12(50):56658. doi: 10.1021/acsami.0c19587. Epub 2020 Dec 04.

No abstract available.

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Li M, Gao L, Schlaich C, et al. Correction to "Construction of Functional Coating with Durable and Broad-Spectrum Antibacterial Potential Based on Mussel-Inspired Dendritic Polyglycerol and In Situ-Formed Copper Nanoparticles". ACS Appl Mater Interfaces. 2020;12(50):56658doi: 10.1021/acsami.0c19587.
Li, M., Gao, L., Schlaich, C., Zhang, J., Donskyi, I. S., Yu, G., Li, W., Tu, Z., Rolff, J., Schwerdtle, T., Haag, R., & Ma, N. (2020). Correction to "Construction of Functional Coating with Durable and Broad-Spectrum Antibacterial Potential Based on Mussel-Inspired Dendritic Polyglycerol and In Situ-Formed Copper Nanoparticles". ACS applied materials & interfaces, 12(50), 56658. https://doi.org/10.1021/acsami.0c19587
Li, Mingjun, et al. "Correction to "Construction of Functional Coating with Durable and Broad-Spectrum Antibacterial Potential Based on Mussel-Inspired Dendritic Polyglycerol and In Situ-Formed Copper Nanoparticles"." ACS applied materials & interfaces vol. 12,50 (2020): 56658. doi: https://doi.org/10.1021/acsami.0c19587
Li M, Gao L, Schlaich C, Zhang J, Donskyi IS, Yu G, Li W, Tu Z, Rolff J, Schwerdtle T, Haag R, Ma N. Correction to "Construction of Functional Coating with Durable and Broad-Spectrum Antibacterial Potential Based on Mussel-Inspired Dendritic Polyglycerol and In Situ-Formed Copper Nanoparticles". ACS Appl Mater Interfaces. 2020 Dec 16;12(50):56658. doi: 10.1021/acsami.0c19587. Epub 2020 Dec 04. PMID: 33275402.
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REPLY.

Hepatology (Baltimore, Md.)

Calderaro J, Schmauch B, Saillard C, Courtiol P.
PMID: 32894800
Hepatology. 2021 May;73(5):2078-2079. doi: 10.1002/hep.31540.

No abstract available.

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Calderaro J, Schmauch B, Saillard C, et al. REPLY. Hepatology. 2021;73(5):2078-2079doi: 10.1002/hep.31540.
Calderaro, J., Schmauch, B., Saillard, C., & Courtiol, P. (2021). REPLY. Hepatology (Baltimore, Md.), 73(5), 2078-2079. https://doi.org/10.1002/hep.31540
Calderaro, Julien, et al. "REPLY." Hepatology (Baltimore, Md.) vol. 73,5 (2021): 2078-2079. doi: https://doi.org/10.1002/hep.31540
Calderaro J, Schmauch B, Saillard C, Courtiol P. REPLY. Hepatology. 2021 May;73(5):2078-2079. doi: 10.1002/hep.31540. PMID: 32894800.
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Simulations of Nanoseparated Charged Surfaces Reveal Charge-Induced Water Reorientation and Nonadditivity of Hydration and Mean-Field Electrostatic Repulsion.

Langmuir : the ACS journal of surfaces and colloids

Schlaich A, Dos Santos AP, Netz RR.
PMID: 30571136
Langmuir. 2019 Jan 15;35(2):551-560. doi: 10.1021/acs.langmuir.8b03474. Epub 2019 Jan 03.

We perform atomistic simulations of nanometer-separated charged surfaces in the presence of monovalent counterions at fixed water chemical potential. The counterion density profiles are well described by a modified Poisson-Boltzmann (MPB) approach that accounts for nonelectrostatic ion-surface interactions, while...

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Schlaich A, Dos Santos AP, Netz RR. Simulations of Nanoseparated Charged Surfaces Reveal Charge-Induced Water Reorientation and Nonadditivity of Hydration and Mean-Field Electrostatic Repulsion. Langmuir. 2019;35(2):551-560doi: 10.1021/acs.langmuir.8b03474.
Schlaich, A., Dos Santos, A. P., & Netz, R. R. (2019). Simulations of Nanoseparated Charged Surfaces Reveal Charge-Induced Water Reorientation and Nonadditivity of Hydration and Mean-Field Electrostatic Repulsion. Langmuir : the ACS journal of surfaces and colloids, 35(2), 551-560. https://doi.org/10.1021/acs.langmuir.8b03474
Schlaich, Alexander, et al. "Simulations of Nanoseparated Charged Surfaces Reveal Charge-Induced Water Reorientation and Nonadditivity of Hydration and Mean-Field Electrostatic Repulsion." Langmuir : the ACS journal of surfaces and colloids vol. 35,2 (2019): 551-560. doi: https://doi.org/10.1021/acs.langmuir.8b03474
Schlaich A, Dos Santos AP, Netz RR. Simulations of Nanoseparated Charged Surfaces Reveal Charge-Induced Water Reorientation and Nonadditivity of Hydration and Mean-Field Electrostatic Repulsion. Langmuir. 2019 Jan 15;35(2):551-560. doi: 10.1021/acs.langmuir.8b03474. Epub 2019 Jan 03. PMID: 30571136.
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Provocation and target gender as moderators of the relationship between acute alcohol use and female perpetrated aggression.

Aggression and violent behavior

Crane CA, Schlauch RC, Testa M, Easton CJ.
PMID: 34045918
Aggress Violent Behav. 2019 May-Jun;40:39-43. doi: 10.1016/j.avb.2018.03.001. Epub 2018 Mar 06.

Acute alcohol use appears to exert a small but significant effect on female perpetrated aggression in the laboratory but there has been no effort to evaluate comprehensively the situational moderators of this relationship. This preliminary review was intended to...

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Crane CA, Schlauch RC, Testa M, et al. Provocation and target gender as moderators of the relationship between acute alcohol use and female perpetrated aggression. Aggress Violent Behav. 2018;40:39-43doi: 10.1016/j.avb.2018.03.001.
Crane, C. A., Schlauch, R. C., Testa, M., & Easton, C. J. (2019). Provocation and target gender as moderators of the relationship between acute alcohol use and female perpetrated aggression. Aggression and violent behavior, 4039-43. https://doi.org/10.1016/j.avb.2018.03.001
Crane, Cory A, et al. "Provocation and target gender as moderators of the relationship between acute alcohol use and female perpetrated aggression." Aggression and violent behavior vol. 40 (2019): 39-43. doi: https://doi.org/10.1016/j.avb.2018.03.001
Crane CA, Schlauch RC, Testa M, Easton CJ. Provocation and target gender as moderators of the relationship between acute alcohol use and female perpetrated aggression. Aggress Violent Behav. 2019 May-Jun;40:39-43. doi: 10.1016/j.avb.2018.03.001. Epub 2018 Mar 06. PMID: 34045918; PMCID: PMC8153192.
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Showing 1 to 12 of 99 entries