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PGAweb: a web server for bacterial pan-genome analysis

pipeline programs

Sun C, Zhang Y, Zhao Y.
GSID: l6wF_Qg_oWcJ
X Chen, Y Zhang, Z Zhang, Y Zhao, C Sun… - Frontiers in …, 2018 - frontiersin.org

An astronomical increase in microbial genome data in recent years has led to strong demand for bioinformatic tools for pan-genome analysis within and across species. Here, we …

Implementing mobile learning curricula in a grade level: Empirical study of learning effectiveness at scale

informal learning

Looi CK, Seow P, Sun D, Wong LH, Wu L.
GSID: yHClIECHWxAJ
CK Looi, D Sun, L Wu, P Seow, G Chia, LH Wong… - Computers & …, 2014 - Elsevier

Developing and then scaling up an educational innovation so that it achieves on the dimensions of depth, sustainability, spread and change of ownership is a complex …

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Looi, C. K., Sun, D., Wu, L., Seow, P., Chia, G., Wong, L. H., ... & Norris, C. (2014). Implementing mobile learning curricula in a grade level: Empirical study of learning effectiveness at scale. Computers & Education, 77, 101-115.
Looi, Chee-Kit, et al. "Implementing mobile learning curricula in a grade level: Empirical study of learning effectiveness at scale." Computers & Education 77 (2014): 101-115.
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Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university.

Frontiers in genetics

Dick DM, Nasim A, Edwards AC, Salvatore JE, Cho SB, Adkins A, Meyers J, Yan J, Cooke M, Clifford J, Goyal N, Halberstadt L, Ailstock K, Neale Z, Opalesky J, Hancock L, Donovan KK, Sun C, Riley B, Kendler KS.
PMID: 24639683
Front Genet. 2014 Mar 06;5:47. doi: 10.3389/fgene.2014.00047. eCollection 2014.

Finding genes involved in complex behavioral outcomes, and understanding the pathways by which they confer risk, is a challenging task, necessitating large samples that are phenotypically well characterized across time. We describe an effort to create a university-wide research...

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Dick DM, Nasim A, Edwards AC, et al. Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university. Front Genet. 2014;5:47doi: 10.3389/fgene.2014.00047.
Dick, D. M., Nasim, A., Edwards, A. C., Salvatore, J. E., Cho, S. B., Adkins, A., Meyers, J., Yan, J., Cooke, M., Clifford, J., Goyal, N., Halberstadt, L., Ailstock, K., Neale, Z., Opalesky, J., Hancock, L., Donovan, K. K., Sun, C., Riley, B., & Kendler, K. S. (2014). Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university. Frontiers in genetics, 547. https://doi.org/10.3389/fgene.2014.00047
Dick, Danielle M, et al. "Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university." Frontiers in genetics vol. 5 (2014): 47. doi: https://doi.org/10.3389/fgene.2014.00047
Dick DM, Nasim A, Edwards AC, Salvatore JE, Cho SB, Adkins A, Meyers J, Yan J, Cooke M, Clifford J, Goyal N, Halberstadt L, Ailstock K, Neale Z, Opalesky J, Hancock L, Donovan KK, Sun C, Riley B, Kendler KS. Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university. Front Genet. 2014 Mar 06;5:47. doi: 10.3389/fgene.2014.00047. eCollection 2014. PMID: 24639683; PMCID: PMC3944794.
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Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles.

Organic letters

Peng X, Wang W, Jiang C, Sun D, Xu Z, Tung CH.
PMID: 25275617
Org Lett. 2014 Oct 17;16(20):5354-7. doi: 10.1021/ol5025426. Epub 2014 Oct 02.

Strained alkynes include arynes and cyclooctynes reacted with N-methoxyamides through palladium-catalyzed C-H/N-H activation for the first time. A variety of important N-heterocycles such as phenanthridinones and isoquinolones were constructed in one step with high efficiency.

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Peng X, Wang W, Jiang C, et al. Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles. Org Lett. 2014;16(20):5354-7doi: 10.1021/ol5025426.
Peng, X., Wang, W., Jiang, C., Sun, D., Xu, Z., & Tung, C. H. (2014). Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles. Organic letters, 16(20), 5354-7. https://doi.org/10.1021/ol5025426
Peng, Xianglong, et al. "Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles." Organic letters vol. 16,20 (2014): 5354-7. doi: https://doi.org/10.1021/ol5025426
Peng X, Wang W, Jiang C, Sun D, Xu Z, Tung CH. Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles. Org Lett. 2014 Oct 17;16(20):5354-7. doi: 10.1021/ol5025426. Epub 2014 Oct 02. PMID: 25275617.
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Evaluating the role of triborane(7) as catalyst in the pyrolysis of tetraborane(10).

The journal of physical chemistry. A

Sun B, McKee ML.
PMID: 24020644
J Phys Chem A. 2013 Sep 19;117(37):9076-82. doi: 10.1021/jp405621u. Epub 2013 Sep 10.

The initial steps in the B4H10 pyrolysis mechanism have been elucidated. The mechanism can be divided into three stages: initial formation of B4H8, production of volatile boranes with B3H7 acting as a catalyst, and formation of nonvolatile products. The...

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Sun B, McKee ML. Evaluating the role of triborane(7) as catalyst in the pyrolysis of tetraborane(10). J Phys Chem A. 2013;117(37):9076-82doi: 10.1021/jp405621u.
Sun, B., & McKee, M. L. (2013). Evaluating the role of triborane(7) as catalyst in the pyrolysis of tetraborane(10). The journal of physical chemistry. A, 117(37), 9076-82. https://doi.org/10.1021/jp405621u
Sun, Baili, and McKee, Michael L. "Evaluating the role of triborane(7) as catalyst in the pyrolysis of tetraborane(10)." The journal of physical chemistry. A vol. 117,37 (2013): 9076-82. doi: https://doi.org/10.1021/jp405621u
Sun B, McKee ML. Evaluating the role of triborane(7) as catalyst in the pyrolysis of tetraborane(10). J Phys Chem A. 2013 Sep 19;117(37):9076-82. doi: 10.1021/jp405621u. Epub 2013 Sep 10. PMID: 24020644.
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Organometallic rotaxane dendrimers with fourth-generation mechanically interlocked branches.

Proceedings of the National Academy of Sciences of the United States of America

Wang W, Chen LJ, Wang XQ, Sun B, Li X, Zhang Y, Shi J, Yu Y, Zhang L, Liu M, Yang HB.
PMID: 25902491
Proc Natl Acad Sci U S A. 2015 May 05;112(18):5597-601. doi: 10.1073/pnas.1500489112. Epub 2015 Apr 20.

Mechanically interlocked molecules, such as catenanes, rotaxanes, and knots, have applications in information storage, switching devices, and chemical catalysis. Rotaxanes are dumbbell-shaped molecules that are threaded through a large ring, and the relative motion of the two components along...

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Wang W, Chen LJ, Wang XQ, et al. Organometallic rotaxane dendrimers with fourth-generation mechanically interlocked branches. Proc Natl Acad Sci U S A. 2015;112(18):5597-601doi: 10.1073/pnas.1500489112.
Wang, W., Chen, L. J., Wang, X. Q., Sun, B., Li, X., Zhang, Y., Shi, J., Yu, Y., Zhang, L., Liu, M., & Yang, H. B. (2015). Organometallic rotaxane dendrimers with fourth-generation mechanically interlocked branches. Proceedings of the National Academy of Sciences of the United States of America, 112(18), 5597-601. https://doi.org/10.1073/pnas.1500489112
Wang, Wei, et al. "Organometallic rotaxane dendrimers with fourth-generation mechanically interlocked branches." Proceedings of the National Academy of Sciences of the United States of America vol. 112,18 (2015): 5597-601. doi: https://doi.org/10.1073/pnas.1500489112
Wang W, Chen LJ, Wang XQ, Sun B, Li X, Zhang Y, Shi J, Yu Y, Zhang L, Liu M, Yang HB. Organometallic rotaxane dendrimers with fourth-generation mechanically interlocked branches. Proc Natl Acad Sci U S A. 2015 May 05;112(18):5597-601. doi: 10.1073/pnas.1500489112. Epub 2015 Apr 20. PMID: 25902491; PMCID: PMC4426417.
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Integration of Faradaic electrochemical impedance spectroscopy into a scalable surface plasmon biosensor for in tandem detection.

Optics express

Hong B, Sun A, Pang L, Venkatesh AG, Hall D, Fainman Y.
PMID: 26698504
Opt Express. 2015 Nov 16;23(23):30237-49. doi: 10.1364/OE.23.030237.

We present an integrated label-free biosensor based on surface plasmon resonance (SPR) and Faradaic electrochemical impedance spectroscopy (f-EIS) sensing modalities, for the simultaneous detection of biological analytes. Analyte detection is based on the angular spectroscopy of surface plasmon resonance...

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Hong B, Sun A, Pang L, et al. Integration of Faradaic electrochemical impedance spectroscopy into a scalable surface plasmon biosensor for in tandem detection. Opt Express. 2015;23(23):30237-49doi: 10.1364/OE.23.030237.
Hong, B., Sun, A., Pang, L., Venkatesh, A. G., Hall, D., & Fainman, Y. (2015). Integration of Faradaic electrochemical impedance spectroscopy into a scalable surface plasmon biosensor for in tandem detection. Optics express, 23(23), 30237-49. https://doi.org/10.1364/OE.23.030237
Hong, Brandon, et al. "Integration of Faradaic electrochemical impedance spectroscopy into a scalable surface plasmon biosensor for in tandem detection." Optics express vol. 23,23 (2015): 30237-49. doi: https://doi.org/10.1364/OE.23.030237
Hong B, Sun A, Pang L, Venkatesh AG, Hall D, Fainman Y. Integration of Faradaic electrochemical impedance spectroscopy into a scalable surface plasmon biosensor for in tandem detection. Opt Express. 2015 Nov 16;23(23):30237-49. doi: 10.1364/OE.23.030237. PMID: 26698504.
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Coralline-Like N-Doped Hierarchically Porous Carbon Derived from Enteromorpha as a Host Matrix for Lithium-Sulfur Battery.

Chemistry (Weinheim an der Bergstrasse, Germany)

Ji S, Imtiaz S, Sun D, Xin Y, Li Q, Huang T, Zhang Z, Huang Y.
PMID: 28967160
Chemistry. 2017 Dec 22;23(72):18208-18215. doi: 10.1002/chem.201703357. Epub 2017 Nov 23.

Coralline-like N-doped hierarchically porous carbon (CNHPC) was prepared through a hydrothermal carbonization process using a sea pollutant enteromorpha as the starting material. The addition of a small amount of glucose during carbonization improved the yield of carbon, and the...

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Ji S, Imtiaz S, Sun D, et al. Coralline-Like N-Doped Hierarchically Porous Carbon Derived from Enteromorpha as a Host Matrix for Lithium-Sulfur Battery. Chemistry. 2017;23(72):18208-18215doi: 10.1002/chem.201703357.
Ji, S., Imtiaz, S., Sun, D., Xin, Y., Li, Q., Huang, T., Zhang, Z., & Huang, Y. (2017). Coralline-Like N-Doped Hierarchically Porous Carbon Derived from Enteromorpha as a Host Matrix for Lithium-Sulfur Battery. Chemistry (Weinheim an der Bergstrasse, Germany), 23(72), 18208-18215. https://doi.org/10.1002/chem.201703357
Ji, Shengnan, et al. "Coralline-Like N-Doped Hierarchically Porous Carbon Derived from Enteromorpha as a Host Matrix for Lithium-Sulfur Battery." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 23,72 (2017): 18208-18215. doi: https://doi.org/10.1002/chem.201703357
Ji S, Imtiaz S, Sun D, Xin Y, Li Q, Huang T, Zhang Z, Huang Y. Coralline-Like N-Doped Hierarchically Porous Carbon Derived from Enteromorpha as a Host Matrix for Lithium-Sulfur Battery. Chemistry. 2017 Dec 22;23(72):18208-18215. doi: 10.1002/chem.201703357. Epub 2017 Nov 23. PMID: 28967160.
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Electrocatalytic Minisci Acylation Reaction of N-Heteroarenes Mediated by NH.

Organic letters

Wang QQ, Xu K, Jiang YY, Liu YG, Sun BG, Zeng CC.
PMID: 28968117
Org Lett. 2017 Oct 20;19(20):5517-5520. doi: 10.1021/acs.orglett.7b02589. Epub 2017 Oct 02.

An electrochemical C-H acylation of electron-deficient N-heteroarenes with α-keto acids is reported. This first electrochemical Minisci acylation reaction proceeded using NH

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Wang QQ, Xu K, Jiang YY, et al. Electrocatalytic Minisci Acylation Reaction of N-Heteroarenes Mediated by NH. Org Lett. 2017;19(20):5517-5520doi: 10.1021/acs.orglett.7b02589.
Wang, Q. Q., Xu, K., Jiang, Y. Y., Liu, Y. G., Sun, B. G., & Zeng, C. C. (2017). Electrocatalytic Minisci Acylation Reaction of N-Heteroarenes Mediated by NH. Organic letters, 19(20), 5517-5520. https://doi.org/10.1021/acs.orglett.7b02589
Wang, Qing-Qing, et al. "Electrocatalytic Minisci Acylation Reaction of N-Heteroarenes Mediated by NH." Organic letters vol. 19,20 (2017): 5517-5520. doi: https://doi.org/10.1021/acs.orglett.7b02589
Wang QQ, Xu K, Jiang YY, Liu YG, Sun BG, Zeng CC. Electrocatalytic Minisci Acylation Reaction of N-Heteroarenes Mediated by NH. Org Lett. 2017 Oct 20;19(20):5517-5520. doi: 10.1021/acs.orglett.7b02589. Epub 2017 Oct 02. PMID: 28968117.
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Prognostic value of programmed death-ligand 1 in sarcoma: a meta-analysis.

Oncotarget

Zhu Z, Jin Z, Zhang M, Tang Y, Yang G, Yuan X, Yao J, Sun D.
PMID: 28938660
Oncotarget. 2017 Jul 11;8(35):59570-59580. doi: 10.18632/oncotarget.19168. eCollection 2017 Aug 29.

BACKGROUND: The prognostic role of programmed death-ligand 1 (PD-L1) in sarcoma remains controversial. We performed a meta-analysis so as to investigate the impact of PD-L1 on clinicopathlogical findings and survival outcomes in sarcoma.MATERIALS AND METHODS: A comprehensive search in...

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Zhu Z, Jin Z, Zhang M, et al. Prognostic value of programmed death-ligand 1 in sarcoma: a meta-analysis. Oncotarget. 2017;8(35):59570-59580doi: 10.18632/oncotarget.19168.
Zhu, Z., Jin, Z., Zhang, M., Tang, Y., Yang, G., Yuan, X., Yao, J., & Sun, D. (2017). Prognostic value of programmed death-ligand 1 in sarcoma: a meta-analysis. Oncotarget, 8(35), 59570-59580. https://doi.org/10.18632/oncotarget.19168
Zhu, Zhenhua, et al. "Prognostic value of programmed death-ligand 1 in sarcoma: a meta-analysis." Oncotarget vol. 8,35 (2017): 59570-59580. doi: https://doi.org/10.18632/oncotarget.19168
Zhu Z, Jin Z, Zhang M, Tang Y, Yang G, Yuan X, Yao J, Sun D. Prognostic value of programmed death-ligand 1 in sarcoma: a meta-analysis. Oncotarget. 2017 Jul 11;8(35):59570-59580. doi: 10.18632/oncotarget.19168. eCollection 2017 Aug 29. PMID: 28938660; PMCID: PMC5601756.
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Carbon Nanofiber Arrays Grown on Three-Dimensional Carbon Fiber Architecture Substrate and Enhanced Interface Performance of Carbon Fiber and Zirconium Carbide Coating.

ACS applied materials & interfaces

Yan L, Zhang X, Hu P, Zhao G, Dong S, Liu D, Sun B, Zhang D, Han J.
PMID: 28485921
ACS Appl Mater Interfaces. 2017 May 24;9(20):17337-17346. doi: 10.1021/acsami.7b02503. Epub 2017 May 12.

Carbon nanofibers (CNFs) were grown around the carbon fiber architecture through a plasma enhanced chemical vapor deposition method to enhance the interface performance between CF architecture substrate and ZrC preceramic matrix. The synthesized 3D CF hierarchical architectures (CNFs-CF) are...

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Yan L, Zhang X, Hu P, et al. Carbon Nanofiber Arrays Grown on Three-Dimensional Carbon Fiber Architecture Substrate and Enhanced Interface Performance of Carbon Fiber and Zirconium Carbide Coating. ACS Appl Mater Interfaces. 2017;9(20):17337-17346doi: 10.1021/acsami.7b02503.
Yan, L., Zhang, X., Hu, P., Zhao, G., Dong, S., Liu, D., Sun, B., Zhang, D., & Han, J. (2017). Carbon Nanofiber Arrays Grown on Three-Dimensional Carbon Fiber Architecture Substrate and Enhanced Interface Performance of Carbon Fiber and Zirconium Carbide Coating. ACS applied materials & interfaces, 9(20), 17337-17346. https://doi.org/10.1021/acsami.7b02503
Yan, Liwen, et al. "Carbon Nanofiber Arrays Grown on Three-Dimensional Carbon Fiber Architecture Substrate and Enhanced Interface Performance of Carbon Fiber and Zirconium Carbide Coating." ACS applied materials & interfaces vol. 9,20 (2017): 17337-17346. doi: https://doi.org/10.1021/acsami.7b02503
Yan L, Zhang X, Hu P, Zhao G, Dong S, Liu D, Sun B, Zhang D, Han J. Carbon Nanofiber Arrays Grown on Three-Dimensional Carbon Fiber Architecture Substrate and Enhanced Interface Performance of Carbon Fiber and Zirconium Carbide Coating. ACS Appl Mater Interfaces. 2017 May 24;9(20):17337-17346. doi: 10.1021/acsami.7b02503. Epub 2017 May 12. PMID: 28485921.
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Multi-rate cubature Kalman filter based data fusion method with residual compensation to adapt to sampling rate discrepancy in attitude measurement system.

The Review of scientific instruments

Guo X, Sun C, Wang P.
PMID: 28863706
Rev Sci Instrum. 2017 Aug;88(8):085002. doi: 10.1063/1.4997072.

This paper investigates the multi-rate inertial and vision data fusion problem in nonlinear attitude measurement systems, where the sampling rate of the inertial sensor is much faster than that of the vision sensor. To fully exploit the high frequency...

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Guo X, Sun C, Wang P. Multi-rate cubature Kalman filter based data fusion method with residual compensation to adapt to sampling rate discrepancy in attitude measurement system. Rev Sci Instrum. 2017;88(8):085002doi: 10.1063/1.4997072.
Guo, X., Sun, C., & Wang, P. (2017). Multi-rate cubature Kalman filter based data fusion method with residual compensation to adapt to sampling rate discrepancy in attitude measurement system. The Review of scientific instruments, 88(8), 085002. https://doi.org/10.1063/1.4997072
Guo, Xiaoting, et al. "Multi-rate cubature Kalman filter based data fusion method with residual compensation to adapt to sampling rate discrepancy in attitude measurement system." The Review of scientific instruments vol. 88,8 (2017): 085002. doi: https://doi.org/10.1063/1.4997072
Guo X, Sun C, Wang P. Multi-rate cubature Kalman filter based data fusion method with residual compensation to adapt to sampling rate discrepancy in attitude measurement system. Rev Sci Instrum. 2017 Aug;88(8):085002. doi: 10.1063/1.4997072. PMID: 28863706.
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Showing 1 to 12 of 6316 entries