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PGAweb: a web server for bacterial pan-genome analysis

pipeline programs

Sun C, Zhang Y, Zhao Y.
GSID: l6wF_Qg_oWcJ
X Chen, Y Zhang, Z Zhang, Y Zhao, C Sun… - Frontiers in …, 2018 - frontiersin.org

An astronomical increase in microbial genome data in recent years has led to strong demand for bioinformatic tools for pan-genome analysis within and across species. Here, we …

PGAP-X: extension on pan-genome analysis pipeline

pipeline programs

Zhao Y, Sun C.
GSID: fwMj34WZxSgJ
Y Zhao, C Sun, D Zhao, Y Zhang… - BMC …, 2018 - bmcgenomics.biomedcentral.com

… Meanwhile, result data produced by other programs with similar function can be imported to be further analyzed and visualized in PGAP-X. To test the performance of PGAP-X, we comprehensively analyzed 14 Streptococcus pneumonia strains and 14 Chlamydia trachomatis....

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Zhao, Y., Sun, C., Zhao, D., Zhang, Y., You, Y., Jia, X., ... & Xiao, J. (2018). PGAP-X: extension on pan-genome analysis pipeline. BMC genomics, 19(1), 115-124.
Zhao, Yongbing, et al. "PGAP-X: extension on pan-genome analysis pipeline." BMC genomics 19.1 (2018): 115-124.
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Exploring students' progression in an inquiry science curriculum enabled by mobile learning

science curriculum

Looi CK, Sun D.
GSID: 9gXgd60NpboJ
CK Looi, D Sun, W Xie - IEEE Transactions on Learning …, 2014 - ieeexplore.ieee.org

… Our project has iteratively and progressively developed the innovative science curriculum “Mobilized 5E Science Curriculum” (M5ESC) via … a science curriculum via a long-term and stage-bystage intervention. The curriculum is mapped to national science curriculum standards, …

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Looi, C. K., Sun, D., & Xie, W. (2014). Exploring students’ progression in an inquiry science curriculum enabled by mobile learning. IEEE Transactions on Learning Technologies, 8(1), 43-54.
Looi, Chee-Kit, Daner Sun, and Wenting Xie. "Exploring students’ progression in an inquiry science curriculum enabled by mobile learning." IEEE Transactions on Learning Technologies 8.1 (2014): 43-54.
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Status of integrated science instruction in junior secondary schools of China: An exploratory study

science instruction

Sun D, Boon CC.
GSID: NGvK5SFbjVUJ
D Sun, ZH Wang, WT Xie, CC Boon - … Journal of Science …, 2014 - Taylor & Francis

… science instruction played a major role in secondary science education though there were some instances of practicing integrated science … had given up the integrated science program and returned to the compartmentalized science instruction, because of various reasons,...

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Sun, D., Wang, Z. H., Xie, W. T., & Boon, C. C. (2014). Status of integrated science instruction in junior secondary schools of China: An exploratory study. International Journal of Science Education, 36(5), 808-838.
Sun, Daner, et al. "Status of integrated science instruction in junior secondary schools of China: An exploratory study." International Journal of Science Education 36.5 (2014): 808-838.
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Enacting a technology-based science curriculum across a grade level: The journey of teachers' appropriation

science curriculum

Looi CK, Sun D, Seow P.
GSID: NQWrKomPndcJ
CK Looi, D Sun, P Seow, G Chia - Computers & Education, 2014 - Elsevier

… science curriculum enabled by mobile technologies in their classrooms. The innovative science curriculum: Mobilized 5E (Engage–Explore–Explain–Elaborate–Evaluate) Science … Different from other science curriculum, we assign home activities for students to further …

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Looi, C. K., Sun, D., Seow, P., & Chia, G. (2014). Enacting a technology-based science curriculum across a grade level: The journey of teachers' appropriation. Computers & Education, 71, 222-236.
Looi, Chee-Kit, et al. "Enacting a technology-based science curriculum across a grade level: The journey of teachers' appropriation." Computers & Education 71 (2014): 222-236.
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Developing a Professional Development Model for Science Teachers to Implement a Mobilized Science Curriculum

science curriculum

LOOI CK, SUN D.
GSID: m4g2W8a61-EJ
D SUN, CK LOOI, YLJ LEEC… - Workshop Proceedings of …, 2013 - researchgate.net

In our work on scaling a mobile technology-facilitated science curriculum called Mobilized 5E Science Curriculum (M5ESC) in a Singapore primary school, great efforts have been …

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SUN, D., LOOI, C. K., LEEC, Y. L. J., & NGd, J. P. S. (2013, November). Developing a Professional Development Model for Science Teachers to Implement a Mobilized Science Curriculum. In Workshop Proceedings of the 21st International Conference on Computers in Education ICCE 2013 (p. 80).
SUN, Daner, et al. "Developing a Professional Development Model for Science Teachers to Implement a Mobilized Science Curriculum." Workshop Proceedings of the 21st International Conference on Computers in Education ICCE 2013. 2013.
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Implementing mobile learning curricula in a grade level: Empirical study of learning effectiveness at scale

informal learning

Looi CK, Seow P, Sun D, Wong LH, Wu L.
GSID: yHClIECHWxAJ
CK Looi, D Sun, L Wu, P Seow, G Chia, LH Wong… - Computers & …, 2014 - Elsevier

Developing and then scaling up an educational innovation so that it achieves on the dimensions of depth, sustainability, spread and change of ownership is a complex …

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Looi, C. K., Sun, D., Wu, L., Seow, P., Chia, G., Wong, L. H., ... & Norris, C. (2014). Implementing mobile learning curricula in a grade level: Empirical study of learning effectiveness at scale. Computers & Education, 77, 101-115.
Looi, Chee-Kit, et al. "Implementing mobile learning curricula in a grade level: Empirical study of learning effectiveness at scale." Computers & Education 77 (2014): 101-115.
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Learning primary science by inquiry: What does a technology-enabled curriculum look like?

science curriculum

Looi CK, Sun D.
GSID: 3NmUzylWRcQJ
D Sun, CK Looi - … Handbook of Schools and Schooling in Asia, 2018 - taylorfrancis.com

The proliferation of technology in many sectors in our society is akin to a tossed stone causing a thousand ripples. Various changes have been brought about via the use of …

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Sun, D., & Looi, C. K. (2018). Learning primary science by inquiry: What does a technology-enabled curriculum look like?. In Routledge International Handbook of Schools and Schooling in Asia (pp. 144-155). Routledge.
Sun, Daner, and Chee-Kit Looi. "Learning primary science by inquiry: What does a technology-enabled curriculum look like?." Routledge International Handbook of Schools and Schooling in Asia. Routledge, 2018. 144-155.
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The innovative immersion of mobile learning into a science curriculum in Singapore: An exploratory study

science curriculum

Sun D, Looi CK, Wu L.
GSID: P3bXFg9EbbkJ
D Sun, CK Looi, L Wu, W Xie - Research in Science Education, 2016 - Springer

… curriculum and evaluating teacher and student involvement in science instruction and learning, we introduce the science curriculum, called Mobilized 5E Science Curriculum … one experienced teacher and her class adopted the curriculum. The findings indicate the intervention …

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Sun, D., Looi, C. K., Wu, L., & Xie, W. (2016). The innovative immersion of mobile learning into a science curriculum in Singapore: An exploratory study. Research in Science Education, 46(4), 547-573.
Sun, Daner, et al. "The innovative immersion of mobile learning into a science curriculum in Singapore: An exploratory study." Research in Science Education 46.4 (2016): 547-573.
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Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university.

Frontiers in genetics

Dick DM, Nasim A, Edwards AC, Salvatore JE, Cho SB, Adkins A, Meyers J, Yan J, Cooke M, Clifford J, Goyal N, Halberstadt L, Ailstock K, Neale Z, Opalesky J, Hancock L, Donovan KK, Sun C, Riley B, Kendler KS.
PMID: 24639683
Front Genet. 2014 Mar 06;5:47. doi: 10.3389/fgene.2014.00047. eCollection 2014.

Finding genes involved in complex behavioral outcomes, and understanding the pathways by which they confer risk, is a challenging task, necessitating large samples that are phenotypically well characterized across time. We describe an effort to create a university-wide research...

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Dick DM, Nasim A, Edwards AC, et al. Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university. Front Genet. 2014;5:47doi: 10.3389/fgene.2014.00047.
Dick, D. M., Nasim, A., Edwards, A. C., Salvatore, J. E., Cho, S. B., Adkins, A., Meyers, J., Yan, J., Cooke, M., Clifford, J., Goyal, N., Halberstadt, L., Ailstock, K., Neale, Z., Opalesky, J., Hancock, L., Donovan, K. K., Sun, C., Riley, B., & Kendler, K. S. (2014). Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university. Frontiers in genetics, 547. https://doi.org/10.3389/fgene.2014.00047
Dick, Danielle M, et al. "Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university." Frontiers in genetics vol. 5 (2014): 47. doi: https://doi.org/10.3389/fgene.2014.00047
Dick DM, Nasim A, Edwards AC, Salvatore JE, Cho SB, Adkins A, Meyers J, Yan J, Cooke M, Clifford J, Goyal N, Halberstadt L, Ailstock K, Neale Z, Opalesky J, Hancock L, Donovan KK, Sun C, Riley B, Kendler KS. Spit for Science: launching a longitudinal study of genetic and environmental influences on substance use and emotional health at a large US university. Front Genet. 2014 Mar 06;5:47. doi: 10.3389/fgene.2014.00047. eCollection 2014. PMID: 24639683; PMCID: PMC3944794.
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Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles.

Organic letters

Peng X, Wang W, Jiang C, Sun D, Xu Z, Tung CH.
PMID: 25275617
Org Lett. 2014 Oct 17;16(20):5354-7. doi: 10.1021/ol5025426. Epub 2014 Oct 02.

Strained alkynes include arynes and cyclooctynes reacted with N-methoxyamides through palladium-catalyzed C-H/N-H activation for the first time. A variety of important N-heterocycles such as phenanthridinones and isoquinolones were constructed in one step with high efficiency.

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Peng X, Wang W, Jiang C, et al. Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles. Org Lett. 2014;16(20):5354-7doi: 10.1021/ol5025426.
Peng, X., Wang, W., Jiang, C., Sun, D., Xu, Z., & Tung, C. H. (2014). Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles. Organic letters, 16(20), 5354-7. https://doi.org/10.1021/ol5025426
Peng, Xianglong, et al. "Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles." Organic letters vol. 16,20 (2014): 5354-7. doi: https://doi.org/10.1021/ol5025426
Peng X, Wang W, Jiang C, Sun D, Xu Z, Tung CH. Strain-promoted oxidative annulation of arynes and cyclooctynes with benzamides: palladium-catalyzed C-H/N-H activation for the synthesis of N-heterocycles. Org Lett. 2014 Oct 17;16(20):5354-7. doi: 10.1021/ol5025426. Epub 2014 Oct 02. PMID: 25275617.
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Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

Genome medicine

O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ.
PMID: 23537139
Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013.

BACKGROUND: To facilitate the clinical implementation of genomic medicine by next-generation sequencing, it will be critically important to obtain accurate and consistent variant calls on personal genomes. Multiple software tools for variant calling are available, but it is unclear...

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O'Rawe J, Jiang T, Sun G, et al. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 2013;5(3):28doi: 10.1186/gm432.
O'Rawe, J., Jiang, T., Sun, G., Wu, Y., Wang, W., Hu, J., Bodily, P., Tian, L., Hakonarson, H., Johnson, W. E., Wei, Z., Wang, K., & Lyon, G. J. (2013). Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome medicine, 5(3), 28. https://doi.org/10.1186/gm432
O'Rawe, Jason, et al. "Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing." Genome medicine vol. 5,3 (2013): 28. doi: https://doi.org/10.1186/gm432
O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013. PMID: 23537139; PMCID: PMC3706896.
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Showing 1 to 12 of 12040 entries