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Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

Genome medicine

O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ.
PMID: 23537139
Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013.

BACKGROUND: To facilitate the clinical implementation of genomic medicine by next-generation sequencing, it will be critically important to obtain accurate and consistent variant calls on personal genomes. Multiple software tools for variant calling are available, but it is unclear...

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O'Rawe J, Jiang T, Sun G, et al. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 2013;5(3):28doi: 10.1186/gm432.
O'Rawe, J., Jiang, T., Sun, G., Wu, Y., Wang, W., Hu, J., Bodily, P., Tian, L., Hakonarson, H., Johnson, W. E., Wei, Z., Wang, K., & Lyon, G. J. (2013). Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome medicine, 5(3), 28. https://doi.org/10.1186/gm432
O'Rawe, Jason, et al. "Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing." Genome medicine vol. 5,3 (2013): 28. doi: https://doi.org/10.1186/gm432
O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013. PMID: 23537139; PMCID: PMC3706896.
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Reply by the Authors.

Urology

Han H, Zhang XD, Tian L.
PMID: 26966040
Urology. 2016 Jun;92:140-1. doi: 10.1016/j.urology.2016.02.038. Epub 2016 Mar 07.

No abstract available.

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Han H, Zhang XD, Tian L. Reply by the Authors. Urology. 2016;92:140-1doi: 10.1016/j.urology.2016.02.038.
Han, H., Zhang, X. D., & Tian, L. (2016). Reply by the Authors. Urology, 92140-1. https://doi.org/10.1016/j.urology.2016.02.038
Han, Hu, et al. "Reply by the Authors." Urology vol. 92 (2016): 140-1. doi: https://doi.org/10.1016/j.urology.2016.02.038
Han H, Zhang XD, Tian L. Reply by the Authors. Urology. 2016 Jun;92:140-1. doi: 10.1016/j.urology.2016.02.038. Epub 2016 Mar 07. PMID: 26966040.
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Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel.

Sensors (Basel, Switzerland)

Tian L, Bao H, Wang M, Duan X.
PMID: 27706076
Sensors (Basel). 2016 Oct 01;16(10). doi: 10.3390/s16101632.

With the aim of developing multiple input and multiple output (MIMO) coupling systems with a redundant parallel adjustment mechanism on the deployable antenna panel, a structural control integrated design methodology is proposed in this paper. Firstly, the modal information...

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Tian L, Bao H, Wang M, et al. Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel. Sensors (Basel). 2016;16(10)doi: 10.3390/s16101632.
Tian, L., Bao, H., Wang, M., & Duan, X. (2016). Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel. Sensors (Basel, Switzerland), 16(10), . https://doi.org/10.3390/s16101632
Tian, Lili, et al. "Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel." Sensors (Basel, Switzerland) vol. 16,10 (2016). doi: https://doi.org/10.3390/s16101632
Tian L, Bao H, Wang M, Duan X. Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel. Sensors (Basel). 2016 Oct 01;16(10). doi: 10.3390/s16101632. PMID: 27706076; PMCID: PMC5087420.
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3D calcite heterostructures for dynamic and deformable mineralized matrices.

Nature communications

Yi J, Wang Y, Jiang Y, Jung IW, Liu W, De Andrade V, Xu R, Parameswaran R, Peters IR, Divan R, Xiao X, Sun T, Lee Y, Park WI, Tian B.
PMID: 28894143
Nat Commun. 2017 Sep 11;8(1):509. doi: 10.1038/s41467-017-00560-1.

Scales are rooted in soft tissues, and are regenerated by specialized cells. The realization of dynamic synthetic analogues with inorganic materials has been a significant challenge, because the abiological regeneration sites that could yield deterministic growth behavior are hard...

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Yi J, Wang Y, Jiang Y, et al. 3D calcite heterostructures for dynamic and deformable mineralized matrices. Nat Commun. 2017;8(1):509doi: 10.1038/s41467-017-00560-1.
Yi, J., Wang, Y., Jiang, Y., Jung, I. W., Liu, W., De Andrade, V., Xu, R., Parameswaran, R., Peters, I. R., Divan, R., Xiao, X., Sun, T., Lee, Y., Park, W. I., & Tian, B. (2017). 3D calcite heterostructures for dynamic and deformable mineralized matrices. Nature communications, 8(1), 509. https://doi.org/10.1038/s41467-017-00560-1
Yi, Jaeseok, et al. "3D calcite heterostructures for dynamic and deformable mineralized matrices." Nature communications vol. 8,1 (2017): 509. doi: https://doi.org/10.1038/s41467-017-00560-1
Yi J, Wang Y, Jiang Y, Jung IW, Liu W, De Andrade V, Xu R, Parameswaran R, Peters IR, Divan R, Xiao X, Sun T, Lee Y, Park WI, Tian B. 3D calcite heterostructures for dynamic and deformable mineralized matrices. Nat Commun. 2017 Sep 11;8(1):509. doi: 10.1038/s41467-017-00560-1. PMID: 28894143; PMCID: PMC5593869.
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Range Analysis of Thermal Stress and Optimal Design for Tungsten-Rhenium Thin Film Thermocouples Based on Ceramic Substrates.

Sensors (Basel, Switzerland)

Zhang Z, Tian B, Yu Q, Shi P, Lin Q, Zhao N, Jing W, Jiang Z.
PMID: 28420088
Sensors (Basel). 2017 Apr 14;17(4). doi: 10.3390/s17040857.

A thermal stress range analysis of tungsten-rhenium thin film thermocouples based on ceramic substrates is presented to analyze the falling off and breakage problems caused by the mismatch of the thermal stresses in thin film thermocouples (TFTCs) and substrate,...

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Zhang Z, Tian B, Yu Q, et al. Range Analysis of Thermal Stress and Optimal Design for Tungsten-Rhenium Thin Film Thermocouples Based on Ceramic Substrates. Sensors (Basel). 2017;17(4)doi: 10.3390/s17040857.
Zhang, Z., Tian, B., Yu, Q., Shi, P., Lin, Q., Zhao, N., Jing, W., & Jiang, Z. (2017). Range Analysis of Thermal Stress and Optimal Design for Tungsten-Rhenium Thin Film Thermocouples Based on Ceramic Substrates. Sensors (Basel, Switzerland), 17(4), . https://doi.org/10.3390/s17040857
Zhang, Zhongkai, et al. "Range Analysis of Thermal Stress and Optimal Design for Tungsten-Rhenium Thin Film Thermocouples Based on Ceramic Substrates." Sensors (Basel, Switzerland) vol. 17,4 (2017). doi: https://doi.org/10.3390/s17040857
Zhang Z, Tian B, Yu Q, Shi P, Lin Q, Zhao N, Jing W, Jiang Z. Range Analysis of Thermal Stress and Optimal Design for Tungsten-Rhenium Thin Film Thermocouples Based on Ceramic Substrates. Sensors (Basel). 2017 Apr 14;17(4). doi: 10.3390/s17040857. PMID: 28420088; PMCID: PMC5424734.
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A novel pH-induced thermosensitive hydrogel composed of carboxymethyl chitosan and poloxamer cross-linked by glutaraldehyde for ophthalmic drug delivery.

Carbohydrate polymers

Yu S, Zhang X, Tan G, Tian L, Liu D, Liu Y, Yang X, Pan W.
PMID: 27702506
Carbohydr Polym. 2017 Jan 02;155:208-217. doi: 10.1016/j.carbpol.2016.08.073. Epub 2016 Aug 25.

In this work, a stimuli-responsive three dimensional cross-linked hydrogel system containing carboxymethyl chitosan (CMC) and poloxamer composed of a poly (ethylene oxide)/poly (propylene oxide)/poly (ethylene oxide) (PEO-PPO-PEO) block copolymer was constructed, and its aqueous solution was found to undergo...

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Yu S, Zhang X, Tan G, et al. A novel pH-induced thermosensitive hydrogel composed of carboxymethyl chitosan and poloxamer cross-linked by glutaraldehyde for ophthalmic drug delivery. Carbohydr Polym. 2016;155:208-217doi: 10.1016/j.carbpol.2016.08.073.
Yu, S., Zhang, X., Tan, G., Tian, L., Liu, D., Liu, Y., Yang, X., & Pan, W. (2017). A novel pH-induced thermosensitive hydrogel composed of carboxymethyl chitosan and poloxamer cross-linked by glutaraldehyde for ophthalmic drug delivery. Carbohydrate polymers, 155208-217. https://doi.org/10.1016/j.carbpol.2016.08.073
Yu, Shihui, et al. "A novel pH-induced thermosensitive hydrogel composed of carboxymethyl chitosan and poloxamer cross-linked by glutaraldehyde for ophthalmic drug delivery." Carbohydrate polymers vol. 155 (2017): 208-217. doi: https://doi.org/10.1016/j.carbpol.2016.08.073
Yu S, Zhang X, Tan G, Tian L, Liu D, Liu Y, Yang X, Pan W. A novel pH-induced thermosensitive hydrogel composed of carboxymethyl chitosan and poloxamer cross-linked by glutaraldehyde for ophthalmic drug delivery. Carbohydr Polym. 2017 Jan 02;155:208-217. doi: 10.1016/j.carbpol.2016.08.073. Epub 2016 Aug 25. PMID: 27702506.
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Treatment Experience of Severe Abdominal Infection after Orthotopic Liver Transplantation.

The West Indian medical journal

Wang YG, Wu JS, Jiang B, Wang JH, Liu CP, Peng C, Tian BZ.
PMID: 26426173
West Indian Med J. 2015 Jun;64(3):218-22. doi: 10.7727/wimj.2014.055. Epub 2015 May 15.

This study aims to investigate the causes and treatment experience of severe abdominal infection after orthotopic liver transplantation. Clinical data were retrospectively analysed in perioperative severe abdominal infection of 186 orthotopic liver transplantation cases from March 2004 to November...

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Wang YG, Wu JS, Jiang B, et al. Treatment Experience of Severe Abdominal Infection after Orthotopic Liver Transplantation. West Indian Med J. 2015;64(3):218-22doi: 10.7727/wimj.2014.055.
Wang, Y. G., Wu, J. S., Jiang, B., Wang, J. H., Liu, C. P., Peng, C., & Tian, B. Z. (2015). Treatment Experience of Severe Abdominal Infection after Orthotopic Liver Transplantation. The West Indian medical journal, 64(3), 218-22. https://doi.org/10.7727/wimj.2014.055
Wang, Y-G, et al. "Treatment Experience of Severe Abdominal Infection after Orthotopic Liver Transplantation." The West Indian medical journal vol. 64,3 (2015): 218-22. doi: https://doi.org/10.7727/wimj.2014.055
Wang YG, Wu JS, Jiang B, Wang JH, Liu CP, Peng C, Tian BZ. Treatment Experience of Severe Abdominal Infection after Orthotopic Liver Transplantation. West Indian Med J. 2015 Jun;64(3):218-22. doi: 10.7727/wimj.2014.055. Epub 2015 May 15. PMID: 26426173; PMCID: PMC4763894.
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Gratitude and Adolescents' Subjective Well-Being in School: The Multiple Mediating Roles of Basic Psychological Needs Satisfaction at School.

Frontiers in psychology

Tian L, Pi L, Huebner ES, Du M.
PMID: 27708601
Front Psychol. 2016 Sep 21;7:1409. doi: 10.3389/fpsyg.2016.01409. eCollection 2016.

Based on the relation between gratitude and general subjective well-being (SWB), and Basic Psychological Needs Theory (Ryan and Deci, 2000), the present study's aim was to use structural equation modeling to test the multiple mediational roles of the satisfaction...

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Tian L, Pi L, Huebner ES, et al. Gratitude and Adolescents' Subjective Well-Being in School: The Multiple Mediating Roles of Basic Psychological Needs Satisfaction at School. Front Psychol. 2016;7:1409doi: 10.3389/fpsyg.2016.01409.
Tian, L., Pi, L., Huebner, E. S., & Du, M. (2016). Gratitude and Adolescents' Subjective Well-Being in School: The Multiple Mediating Roles of Basic Psychological Needs Satisfaction at School. Frontiers in psychology, 71409. https://doi.org/10.3389/fpsyg.2016.01409
Tian, Lili, et al. "Gratitude and Adolescents' Subjective Well-Being in School: The Multiple Mediating Roles of Basic Psychological Needs Satisfaction at School." Frontiers in psychology vol. 7 (2016): 1409. doi: https://doi.org/10.3389/fpsyg.2016.01409
Tian L, Pi L, Huebner ES, Du M. Gratitude and Adolescents' Subjective Well-Being in School: The Multiple Mediating Roles of Basic Psychological Needs Satisfaction at School. Front Psychol. 2016 Sep 21;7:1409. doi: 10.3389/fpsyg.2016.01409. eCollection 2016. PMID: 27708601; PMCID: PMC5030329.
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Biological effects of lentivirus-mediated silencing of minichromosome maintenance protein 7 with shRNA on the liver cancer MHCC-97H cells.

International journal of clinical and experimental medicine

Liu J, Tian L, Chen BA, Xia JR.
PMID: 26309496
Int J Clin Exp Med. 2015 Jun 15;8(6):8433-41. eCollection 2015.

OBJECTIVE: This study was to specifically silence the minichromosome maintenance protein 7 (MCM7) expressions with lentivirus-mediated RNA interference technique in liver cancer MHCC-97H cells and its biological consequences were investigated.METHODS: Human MCM7 sequence was used for the design of...

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Liu J, Tian L, Chen BA, et al. Biological effects of lentivirus-mediated silencing of minichromosome maintenance protein 7 with shRNA on the liver cancer MHCC-97H cells. Int J Clin Exp Med. 2015;8(6):8433-41
Liu, J., Tian, L., Chen, B. A., & Xia, J. R. (2015). Biological effects of lentivirus-mediated silencing of minichromosome maintenance protein 7 with shRNA on the liver cancer MHCC-97H cells. International journal of clinical and experimental medicine, 8(6), 8433-41.
Liu, Juan, et al. "Biological effects of lentivirus-mediated silencing of minichromosome maintenance protein 7 with shRNA on the liver cancer MHCC-97H cells." International journal of clinical and experimental medicine vol. 8,6 (2015): 8433-41.
Liu J, Tian L, Chen BA, Xia JR. Biological effects of lentivirus-mediated silencing of minichromosome maintenance protein 7 with shRNA on the liver cancer MHCC-97H cells. Int J Clin Exp Med. 2015 Jun 15;8(6):8433-41. eCollection 2015. PMID: 26309496; PMCID: PMC4538142.
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Spatially Confined Hybridization of Nanometer-Sized NiFe Hydroxides into Nitrogen-Doped Graphene Frameworks Leading to Superior Oxygen Evolution Reactivity.

Advanced materials (Deerfield Beach, Fla.)

Tang C, Wang HS, Wang HF, Zhang Q, Tian GL, Nie JQ, Wei F.
PMID: 26115530
Adv Mater. 2015 Aug;27(30):4516-4522. doi: 10.1002/adma.201501901. Epub 2015 Jun 26.

Nanometer-sized hydroxide active centers are uniformly and strongly hybridized into a graphene framework by means of defect-anchored nucleation and spatially confined growth, resulting in a superior electrocatalyst for oxygen evolution reaction. This family of strongly coupled complexes and the...

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Tang C, Wang HS, Wang HF, et al. Spatially Confined Hybridization of Nanometer-Sized NiFe Hydroxides into Nitrogen-Doped Graphene Frameworks Leading to Superior Oxygen Evolution Reactivity. Adv Mater. 2015;27(30):4516-4522doi: 10.1002/adma.201501901.
Tang, C., Wang, H. S., Wang, H. F., Zhang, Q., Tian, G. L., Nie, J. Q., & Wei, F. (2015). Spatially Confined Hybridization of Nanometer-Sized NiFe Hydroxides into Nitrogen-Doped Graphene Frameworks Leading to Superior Oxygen Evolution Reactivity. Advanced materials (Deerfield Beach, Fla.), 27(30), 4516-4522. https://doi.org/10.1002/adma.201501901
Tang, Cheng, et al. "Spatially Confined Hybridization of Nanometer-Sized NiFe Hydroxides into Nitrogen-Doped Graphene Frameworks Leading to Superior Oxygen Evolution Reactivity." Advanced materials (Deerfield Beach, Fla.) vol. 27,30 (2015): 4516-4522. doi: https://doi.org/10.1002/adma.201501901
Tang C, Wang HS, Wang HF, Zhang Q, Tian GL, Nie JQ, Wei F. Spatially Confined Hybridization of Nanometer-Sized NiFe Hydroxides into Nitrogen-Doped Graphene Frameworks Leading to Superior Oxygen Evolution Reactivity. Adv Mater. 2015 Aug;27(30):4516-4522. doi: 10.1002/adma.201501901. Epub 2015 Jun 26. PMID: 26115530.
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Radiation-Induced Helium Nanobubbles Enhance Ductility in Submicron-Sized Single-Crystalline Copper.

Nano letters

Ding MS, Du JP, Wan L, Ogata S, Tian L, Ma E, Han WZ, Li J, Shan ZW.
PMID: 27249672
Nano Lett. 2016 Jul 13;16(7):4118-24. doi: 10.1021/acs.nanolett.6b00864. Epub 2016 Jun 06.

The workability and ductility of metals usually degrade with exposure to irradiation, hence the phrase "radiation damage". Here, we found that helium (He) radiation can actually enhance the room-temperature deformability of submicron-sized copper. In particular, Cu single crystals with...

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Ding MS, Du JP, Wan L, et al. Radiation-Induced Helium Nanobubbles Enhance Ductility in Submicron-Sized Single-Crystalline Copper. Nano Lett. 2016;16(7):4118-24doi: 10.1021/acs.nanolett.6b00864.
Ding, M. S., Du, J. P., Wan, L., Ogata, S., Tian, L., Ma, E., Han, W. Z., Li, J., & Shan, Z. W. (2016). Radiation-Induced Helium Nanobubbles Enhance Ductility in Submicron-Sized Single-Crystalline Copper. Nano letters, 16(7), 4118-24. https://doi.org/10.1021/acs.nanolett.6b00864
Ding, Ming-Shuai, et al. "Radiation-Induced Helium Nanobubbles Enhance Ductility in Submicron-Sized Single-Crystalline Copper." Nano letters vol. 16,7 (2016): 4118-24. doi: https://doi.org/10.1021/acs.nanolett.6b00864
Ding MS, Du JP, Wan L, Ogata S, Tian L, Ma E, Han WZ, Li J, Shan ZW. Radiation-Induced Helium Nanobubbles Enhance Ductility in Submicron-Sized Single-Crystalline Copper. Nano Lett. 2016 Jul 13;16(7):4118-24. doi: 10.1021/acs.nanolett.6b00864. Epub 2016 Jun 06. PMID: 27249672.
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Obstructive sleep apnea affects the clinical outcomes of patients undergoing percutaneous coronary intervention.

Patient preference and adherence

Zhang JJ, Gao XF, Ge Z, Jiang XM, Xiao PX, Tian NL, Kan J, Lee CH, Chen SL.
PMID: 27284240
Patient Prefer Adherence. 2016 May 20;10:871-8. doi: 10.2147/PPA.S104100. eCollection 2016.

BACKGROUND: There is a paucity of evidence regarding the association between obstructive sleep apnea (OSA) and patients undergoing percutaneous coronary intervention (PCI) for coronary artery disease. We sought to investigate whether OSA affects the clinical outcomes of patients undergoing...

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Zhang JJ, Gao XF, Ge Z, et al. Obstructive sleep apnea affects the clinical outcomes of patients undergoing percutaneous coronary intervention. Patient Prefer Adherence. 2016;10:871-8doi: 10.2147/PPA.S104100.
Zhang, J. J., Gao, X. F., Ge, Z., Jiang, X. M., Xiao, P. X., Tian, N. L., Kan, J., Lee, C. H., & Chen, S. L. (2016). Obstructive sleep apnea affects the clinical outcomes of patients undergoing percutaneous coronary intervention. Patient preference and adherence, 10871-8. https://doi.org/10.2147/PPA.S104100
Zhang, Jun-Jie, et al. "Obstructive sleep apnea affects the clinical outcomes of patients undergoing percutaneous coronary intervention." Patient preference and adherence vol. 10 (2016): 871-8. doi: https://doi.org/10.2147/PPA.S104100
Zhang JJ, Gao XF, Ge Z, Jiang XM, Xiao PX, Tian NL, Kan J, Lee CH, Chen SL. Obstructive sleep apnea affects the clinical outcomes of patients undergoing percutaneous coronary intervention. Patient Prefer Adherence. 2016 May 20;10:871-8. doi: 10.2147/PPA.S104100. eCollection 2016. PMID: 27284240; PMCID: PMC4881919.
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Showing 1 to 12 of 2652 entries