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Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

pipeline programs

Baheti S, Kanwar R.
GSID: NfVSroXD87IJ
S Baheti, R Kanwar… - BMC …, 2016 - bmcgenomics.biomedcentral.com

DNA methylation is an important epigenetic modification involved in many biological processes. Reduced representation bisulfite sequencing (RRBS) is a cost-effective method …

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Baheti, S., Kanwar, R., Goelzenleuchter, M., Kocher, J. P. A., Beutler, A. S., & Sun, Z. (2016). Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data. BMC genomics, 17(1), 1-8.
Baheti, Saurabh, et al. "Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data." BMC genomics 17.1 (2016): 1-8.
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Are media literacy interventions effective at changing attitudes and intentions towards risky health behaviors in adolescents? A meta-analytic review

Non-school settings

Vahedi Z, Sibalis A, Sutherland JE.
GSID: op1YsLPB188J
Z Vahedi, A Sibalis, JE Sutherland - Journal of adolescence, 2018 - Elsevier

… Intervention settings and outcomes Analyses indicated that non-school-based interventions are potentially more effective than school-based ones, though this … However, more direct comparisons between school- and non-school-based designs are needed to test this effect. …

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Vahedi, Z., Sibalis, A., & Sutherland, J. E. (2018). Are media literacy interventions effective at changing attitudes and intentions towards risky health behaviors in adolescents? A meta-analytic review. Journal of adolescence, 67, 140-152.
Vahedi, Zahra, Annabel Sibalis, and Jessica E. Sutherland. "Are media literacy interventions effective at changing attitudes and intentions towards risky health behaviors in adolescents? A meta-analytic review." Journal of adolescence 67 (2018): 140-152.
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SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

pipeline programs

Sun Z, Baheti S, Middha S, Kanwar R, Zhang Y.
GSID: 7X6GWoKIRfsJ
Z Sun, S Baheti, S Middha, R Kanwar, Y Zhang… - …, 2012 - academic.oup.com

… BSMAP version 2.43 is integrated into the pipeline as the default aligner. For RRBS, -D C-CGG option is turned on for RRBSMAP … We have compared RRBSMAP with three other alignment programs using simulated and real data, and...

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Sun, Z., Baheti, S., Middha, S., Kanwar, R., Zhang, Y., Li, X., ... & Kocher, J. P. A. (2012). SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing. Bioinformatics, 28(16), 2180-2181.
Sun, Zhifu, et al. "SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing." Bioinformatics 28.16 (2012): 2180-2181.
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Evaluation of patients' satisfaction with anesthesia in gastrointestinal endoscopic procedures in Iran.

Gastroenterology and hepatology from bed to bench

Iravani S, Frootan M, Zojaji H, Azizi M, Saeedi S, Hashemi MR, Azimzadeh P.
PMID: 24834185
Gastroenterol Hepatol Bed Bench. 2011;4(4):214-8.

AIM: The purpose of this study was to assess satisfaction level and related factors among patients who had an anesthesia during endoscopic procedures; and also validate a questionnaire for evaluating satisfaction with anesthesia.BACKGROUND: The level of patient satisfaction with...

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Iravani S, Frootan M, Zojaji H, et al. Evaluation of patients' satisfaction with anesthesia in gastrointestinal endoscopic procedures in Iran. Gastroenterol Hepatol Bed Bench. 2011;4(4):214-8
Iravani, S., Frootan, M., Zojaji, H., Azizi, M., Saeedi, S., Hashemi, M. R., & Azimzadeh, P. (2011). Evaluation of patients' satisfaction with anesthesia in gastrointestinal endoscopic procedures in Iran. Gastroenterology and hepatology from bed to bench, 4(4), 214-8.
Iravani, Shahrokh, et al. "Evaluation of patients' satisfaction with anesthesia in gastrointestinal endoscopic procedures in Iran." Gastroenterology and hepatology from bed to bench vol. 4,4 (2011): 214-8.
Iravani S, Frootan M, Zojaji H, Azizi M, Saeedi S, Hashemi MR, Azimzadeh P. Evaluation of patients' satisfaction with anesthesia in gastrointestinal endoscopic procedures in Iran. Gastroenterol Hepatol Bed Bench. 2011;4(4):214-8. PMID: 24834185; PMCID: PMC4017439.
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The Effect of Herbal Tea Containing Fenugreek Seed on the Signs of Breast Milk Sufficiency in Iranian Girl Infants.

Iranian Red Crescent medical journal

Ghasemi V, Kheirkhah M, Vahedi M.
PMID: 26430522
Iran Red Crescent Med J. 2015 Aug 15;17(8):e21848. doi: 10.5812/ircmj.21848. eCollection 2015 Aug.

BACKGROUND: One of the important reasons behind termination of breast-feeding in the first six months after childbirth is insufficient production of breast milk.OBJECTIVES: The aim of this study was to determine the effect of herbal tea containing fenugreek seed...

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Ghasemi V, Kheirkhah M, Vahedi M. The Effect of Herbal Tea Containing Fenugreek Seed on the Signs of Breast Milk Sufficiency in Iranian Girl Infants. Iran Red Crescent Med J. 2015;17(8):e21848doi: 10.5812/ircmj.21848.
Ghasemi, V., Kheirkhah, M., & Vahedi, M. (2015). The Effect of Herbal Tea Containing Fenugreek Seed on the Signs of Breast Milk Sufficiency in Iranian Girl Infants. Iranian Red Crescent medical journal, 17(8), e21848. https://doi.org/10.5812/ircmj.21848
Ghasemi, Vida, et al. "The Effect of Herbal Tea Containing Fenugreek Seed on the Signs of Breast Milk Sufficiency in Iranian Girl Infants." Iranian Red Crescent medical journal vol. 17,8 (2015): e21848. doi: https://doi.org/10.5812/ircmj.21848
Ghasemi V, Kheirkhah M, Vahedi M. The Effect of Herbal Tea Containing Fenugreek Seed on the Signs of Breast Milk Sufficiency in Iranian Girl Infants. Iran Red Crescent Med J. 2015 Aug 15;17(8):e21848. doi: 10.5812/ircmj.21848. eCollection 2015 Aug. PMID: 26430522; PMCID: PMC4585338.
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Nonadherence to Medication in Inflammatory Bowel Disease: Rate and Reasons.

Middle East journal of digestive diseases

Ghadir MR, Bagheri M, Vahedi H, Ebrahimi Daryani N, Malekzadeh R, Hormati A, Kolahdoozan S, Chaharmahali M.
PMID: 27252818
Middle East J Dig Dis. 2016 Apr;8(2):116-21. doi: 10.15171/mejdd.2016.16.

BACKGROUND This study is the first study to evaluate the nonadherence rate and reasons of same patient with inflammatory bowel disease (IBD) in Iran. METHODS During 9 months, 500 patients with IBD were enrolled in the study. Patients were...

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Ghadir MR, Bagheri M, Vahedi H, et al. Nonadherence to Medication in Inflammatory Bowel Disease: Rate and Reasons. Middle East J Dig Dis. 2016;8(2):116-21doi: 10.15171/mejdd.2016.16.
Ghadir, M. R., Bagheri, M., Vahedi, H., Ebrahimi Daryani, N., Malekzadeh, R., Hormati, A., Kolahdoozan, S., & Chaharmahali, M. (2016). Nonadherence to Medication in Inflammatory Bowel Disease: Rate and Reasons. Middle East journal of digestive diseases, 8(2), 116-21. https://doi.org/10.15171/mejdd.2016.16
Ghadir, Mohammad Reza, et al. "Nonadherence to Medication in Inflammatory Bowel Disease: Rate and Reasons." Middle East journal of digestive diseases vol. 8,2 (2016): 116-21. doi: https://doi.org/10.15171/mejdd.2016.16
Ghadir MR, Bagheri M, Vahedi H, Ebrahimi Daryani N, Malekzadeh R, Hormati A, Kolahdoozan S, Chaharmahali M. Nonadherence to Medication in Inflammatory Bowel Disease: Rate and Reasons. Middle East J Dig Dis. 2016 Apr;8(2):116-21. doi: 10.15171/mejdd.2016.16. PMID: 27252818; PMCID: PMC4885610.
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Advantages of Sheep Infrapatellar Fat Pad Adipose Tissue Derived Stem Cells in Tissue Engineering.

Advanced pharmaceutical bulletin

Vahedi P, Soleimanirad J, Roshangar L, Shafaei H, Jarolmasjed S, Nozad Charoudeh H.
PMID: 27123425
Adv Pharm Bull. 2016 Mar;6(1):105-10. doi: 10.15171/apb.2016.016. Epub 2016 Mar 17.

PURPOSE: The goal of this study has been to evaluate adipose tissue derived stem cells (ADSCs) from infrapatellar fat pad and characterize their cell surface markers using anti-human antibodies, as adipose tissue derived stem cells (ADSCs) have great potential...

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Vahedi P, Soleimanirad J, Roshangar L, et al. Advantages of Sheep Infrapatellar Fat Pad Adipose Tissue Derived Stem Cells in Tissue Engineering. Adv Pharm Bull. 2016;6(1):105-10doi: 10.15171/apb.2016.016.
Vahedi, P., Soleimanirad, J., Roshangar, L., Shafaei, H., Jarolmasjed, S., & Nozad Charoudeh, H. (2016). Advantages of Sheep Infrapatellar Fat Pad Adipose Tissue Derived Stem Cells in Tissue Engineering. Advanced pharmaceutical bulletin, 6(1), 105-10. https://doi.org/10.15171/apb.2016.016
Vahedi, Parviz, et al. "Advantages of Sheep Infrapatellar Fat Pad Adipose Tissue Derived Stem Cells in Tissue Engineering." Advanced pharmaceutical bulletin vol. 6,1 (2016): 105-10. doi: https://doi.org/10.15171/apb.2016.016
Vahedi P, Soleimanirad J, Roshangar L, Shafaei H, Jarolmasjed S, Nozad Charoudeh H. Advantages of Sheep Infrapatellar Fat Pad Adipose Tissue Derived Stem Cells in Tissue Engineering. Adv Pharm Bull. 2016 Mar;6(1):105-10. doi: 10.15171/apb.2016.016. Epub 2016 Mar 17. PMID: 27123425; PMCID: PMC4845544.
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Saffron'omics': The challenges of integrating omic technologies.

Avicenna journal of phytomedicine

Panchangam SS, Vahedi M, Megha MJ, Kumar A, Raithatha K, Suravajhala R, Reddy P.
PMID: 28078242
Avicenna J Phytomed. 2016 Nov-Dec;6(6):604-620.

Saffron is one of the highly exotic spices known for traditional values and antiquity. It is used for home décor besides serving as a colorant flavor and is widely known for medicinal value. Over the last few years, saffron...

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Panchangam SS, Vahedi M, Megha MJ, et al. Saffron'omics': The challenges of integrating omic technologies. Avicenna J Phytomed. 2016;6(6):604-620
Panchangam, S. S., Vahedi, M., Megha, M. J., Kumar, A., Raithatha, K., Suravajhala, R., & Reddy, P. (2016). Saffron'omics': The challenges of integrating omic technologies. Avicenna journal of phytomedicine, 6(6), 604-620.
Panchangam, Sameera Sastry, et al. "Saffron'omics': The challenges of integrating omic technologies." Avicenna journal of phytomedicine vol. 6,6 (2016): 604-620.
Panchangam SS, Vahedi M, Megha MJ, Kumar A, Raithatha K, Suravajhala R, Reddy P. Saffron'omics': The challenges of integrating omic technologies. Avicenna J Phytomed. 2016 Nov-Dec;6(6):604-620. PMID: 28078242; PMCID: PMC5206920.
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Methods of Liver Stem Cell Therapy in Rodents as Models of Human Liver Regeneration in Hepatic Failure.

Advanced pharmaceutical bulletin

Hashemi Goradel N, Darabi M, Shamsasenjan K, Ejtehadifar M, Zahedi S.
PMID: 26504749
Adv Pharm Bull. 2015 Sep;5(3):293-8. doi: 10.5681/apb.2015.041. Epub 2015 Sep 19.

Cell therapy is a promising intervention for treating liver diseases and liver failure. Different animal models of human liver cell therapy have been developed in recent years. Rats and mice are the most commonly used liver failure models. In...

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Hashemi Goradel N, Darabi M, Shamsasenjan K, et al. Methods of Liver Stem Cell Therapy in Rodents as Models of Human Liver Regeneration in Hepatic Failure. Adv Pharm Bull. 2015;5(3):293-8doi: 10.5681/apb.2015.041.
Hashemi Goradel, N., Darabi, M., Shamsasenjan, K., Ejtehadifar, M., & Zahedi, S. (2015). Methods of Liver Stem Cell Therapy in Rodents as Models of Human Liver Regeneration in Hepatic Failure. Advanced pharmaceutical bulletin, 5(3), 293-8. https://doi.org/10.5681/apb.2015.041
Hashemi Goradel, Nasser, et al. "Methods of Liver Stem Cell Therapy in Rodents as Models of Human Liver Regeneration in Hepatic Failure." Advanced pharmaceutical bulletin vol. 5,3 (2015): 293-8. doi: https://doi.org/10.5681/apb.2015.041
Hashemi Goradel N, Darabi M, Shamsasenjan K, Ejtehadifar M, Zahedi S. Methods of Liver Stem Cell Therapy in Rodents as Models of Human Liver Regeneration in Hepatic Failure. Adv Pharm Bull. 2015 Sep;5(3):293-8. doi: 10.5681/apb.2015.041. Epub 2015 Sep 19. PMID: 26504749; PMCID: PMC4616895.
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Validation and Psychometric Properties of Mobile Phone Problematic Use Scale (MPPUS) in University Students of Tehran.

Iranian journal of psychiatry

Mohammadi Kalhori S, Mohammadi MR, Alavi SS, Jannatifard F, Sepahbodi G, Baba Reisi M, Sajedi S, Farshchi M, KhodaKarami R, Hatami Kasvaee V.
PMID: 26005477
Iran J Psychiatry. 2015;10(1):25-31.

OBJECTIVE: Despite the fact that the mobile phone has become a pervasive technology of our time, little research has been done on mobile dependency. Therefore, a valid and reliable instrument, conforming to Iranian culture seems essential. The aim of...

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Mohammadi Kalhori S, Mohammadi MR, Alavi SS, et al. Validation and Psychometric Properties of Mobile Phone Problematic Use Scale (MPPUS) in University Students of Tehran. Iran J Psychiatry. 2015;10(1):25-31
Mohammadi Kalhori, S., Mohammadi, M. R., Alavi, S. S., Jannatifard, F., Sepahbodi, G., Baba Reisi, M., Sajedi, S., Farshchi, M., KhodaKarami, R., & Hatami Kasvaee, V. (2015). Validation and Psychometric Properties of Mobile Phone Problematic Use Scale (MPPUS) in University Students of Tehran. Iranian journal of psychiatry, 10(1), 25-31.
Mohammadi Kalhori, Soroush, et al. "Validation and Psychometric Properties of Mobile Phone Problematic Use Scale (MPPUS) in University Students of Tehran." Iranian journal of psychiatry vol. 10,1 (2015): 25-31.
Mohammadi Kalhori S, Mohammadi MR, Alavi SS, Jannatifard F, Sepahbodi G, Baba Reisi M, Sajedi S, Farshchi M, KhodaKarami R, Hatami Kasvaee V. Validation and Psychometric Properties of Mobile Phone Problematic Use Scale (MPPUS) in University Students of Tehran. Iran J Psychiatry. 2015;10(1):25-31. PMID: 26005477; PMCID: PMC4434425.
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Sympathetic skin response in patients with vascular erectile dysfunction.

The world journal of men's health

Jazayeri M, Kazemi B, Aminsharifi A, Ashraf A, Naseri M, Nasseri A, Vahedi A.
PMID: 24872950
World J Mens Health. 2014 Apr;32(1):36-42. doi: 10.5534/wjmh.2014.32.1.36. Epub 2014 Apr 25.

PURPOSE: We aimed to investigate the utility of sympathetic skin response (SSR) test for evaluating vasculogenic erectile dysfunction (ED) which is the most common type of impotence.MATERIALS AND METHODS: Men in the age group of 28 to 60 years...

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Jazayeri M, Kazemi B, Aminsharifi A, et al. Sympathetic skin response in patients with vascular erectile dysfunction. World J Mens Health. 2014;32(1):36-42doi: 10.5534/wjmh.2014.32.1.36.
Jazayeri, M., Kazemi, B., Aminsharifi, A., Ashraf, A., Naseri, M., Nasseri, A., & Vahedi, A. (2014). Sympathetic skin response in patients with vascular erectile dysfunction. The world journal of men's health, 32(1), 36-42. https://doi.org/10.5534/wjmh.2014.32.1.36
Jazayeri, Mostafa, et al. "Sympathetic skin response in patients with vascular erectile dysfunction." The world journal of men's health vol. 32,1 (2014): 36-42. doi: https://doi.org/10.5534/wjmh.2014.32.1.36
Jazayeri M, Kazemi B, Aminsharifi A, Ashraf A, Naseri M, Nasseri A, Vahedi A. Sympathetic skin response in patients with vascular erectile dysfunction. World J Mens Health. 2014 Apr;32(1):36-42. doi: 10.5534/wjmh.2014.32.1.36. Epub 2014 Apr 25. PMID: 24872950; PMCID: PMC4026232.
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Stability of antibacterial activity of Chlorhexidine and Doxycycline in bovine root dentine.

Journal of research in pharmacy practice

Khademi AA, Saleh M, Khabiri M, Jahadi S.
PMID: 24991631
J Res Pharm Pract. 2014 Jan;3(1):19-22. doi: 10.4103/2279-042X.132705.

OBJECTIVE: The aim of this study was to compare the substantivity of chlorhexidine (CHX) and doxycycline bond to the dentin in diffusion disk method.METHODS: A total of 92 dentin disks were prepared from Bovine's teeth root. After removing cementum...

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Khademi AA, Saleh M, Khabiri M, et al. Stability of antibacterial activity of Chlorhexidine and Doxycycline in bovine root dentine. J Res Pharm Pract. 2014;3(1):19-22doi: 10.4103/2279-042X.132705.
Khademi, A. A., Saleh, M., Khabiri, M., & Jahadi, S. (2014). Stability of antibacterial activity of Chlorhexidine and Doxycycline in bovine root dentine. Journal of research in pharmacy practice, 3(1), 19-22. https://doi.org/10.4103/2279-042X.132705
Khademi, Abbas Ali, et al. "Stability of antibacterial activity of Chlorhexidine and Doxycycline in bovine root dentine." Journal of research in pharmacy practice vol. 3,1 (2014): 19-22. doi: https://doi.org/10.4103/2279-042X.132705
Khademi AA, Saleh M, Khabiri M, Jahadi S. Stability of antibacterial activity of Chlorhexidine and Doxycycline in bovine root dentine. J Res Pharm Pract. 2014 Jan;3(1):19-22. doi: 10.4103/2279-042X.132705. PMID: 24991631; PMCID: PMC4078646.
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Showing 1 to 12 of 660 entries