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Array programming with NumPy

Geoscience Opportunities for Leadership in Diversity AND Program Evaluation

Gommers R, Millman KJ, Van SJ.
GSID: wI-8zxOLJeEJ
CR Harris, KJ Millman, SJ Van Der Walt, R Gommers… - Nature, 2020 - nature.com

Array programming provides a powerful, compact and expressive syntax for accessing, manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy …

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Harris, C. R., Millman, K. J., Van Der Walt, S. J., Gommers, R., Virtanen, P., Cournapeau, D., ... & Oliphant, T. E. (2020). Array programming with NumPy. Nature, 585(7825), 357-362.
Harris, Charles R., et al. "Array programming with NumPy." Nature 585.7825 (2020): 357-362.
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Cost-Effectiveness Analysis of Surgical versus Medical Treatment of Prolactinomas.

Journal of neurological surgery. Part B, Skull base

Zygourakis CC, Imber BS, Chen R, Han SJ, Blevins L, Molinaro A, Kahn JG, Aghi MK.
PMID: 28321375
J Neurol Surg B Skull Base. 2017 Apr;78(2):125-131. doi: 10.1055/s-0036-1592193. Epub 2016 Sep 27.

No abstract available.

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Zygourakis CC, Imber BS, Chen R, et al. Cost-Effectiveness Analysis of Surgical versus Medical Treatment of Prolactinomas. J Neurol Surg B Skull Base. 2016;78(2):125-131doi: 10.1055/s-0036-1592193.
Zygourakis, C. C., Imber, B. S., Chen, R., Han, S. J., Blevins, L., Molinaro, A., Kahn, J. G., & Aghi, M. K. (2017). Cost-Effectiveness Analysis of Surgical versus Medical Treatment of Prolactinomas. Journal of neurological surgery. Part B, Skull base, 78(2), 125-131. https://doi.org/10.1055/s-0036-1592193
Zygourakis, Corinna C, et al. "Cost-Effectiveness Analysis of Surgical versus Medical Treatment of Prolactinomas." Journal of neurological surgery. Part B, Skull base vol. 78,2 (2017): 125-131. doi: https://doi.org/10.1055/s-0036-1592193
Zygourakis CC, Imber BS, Chen R, Han SJ, Blevins L, Molinaro A, Kahn JG, Aghi MK. Cost-Effectiveness Analysis of Surgical versus Medical Treatment of Prolactinomas. J Neurol Surg B Skull Base. 2017 Apr;78(2):125-131. doi: 10.1055/s-0036-1592193. Epub 2016 Sep 27. PMID: 28321375; PMCID: PMC5357228.
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Effects of fasting and feeding on the fast-start swimming performance of southern catfish Silurus meridionalis.

Journal of fish biology

Yan GJ, He XK, Cao ZD, Fu SJ.
PMID: 25605367
J Fish Biol. 2015 Feb;86(2):605-614. doi: 10.1111/jfb.12595. Epub 2015 Jan 21.

This study investigated the effects of fasting and feeding on the fast-start escape swimming performance of juvenile southern catfish Silurus meridionalis, a sit-and-wait forager that encounters extreme fasting and famine frequently during its lifespan. Ten to 30 days of...

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Yan GJ, He XK, Cao ZD, et al. Effects of fasting and feeding on the fast-start swimming performance of southern catfish Silurus meridionalis. J Fish Biol. 2015;86(2):605-614doi: 10.1111/jfb.12595.
Yan, G. J., He, X. K., Cao, Z. D., & Fu, S. J. (2015). Effects of fasting and feeding on the fast-start swimming performance of southern catfish Silurus meridionalis. Journal of fish biology, 86(2), 605-614. https://doi.org/10.1111/jfb.12595
Yan, G J, et al. "Effects of fasting and feeding on the fast-start swimming performance of southern catfish Silurus meridionalis." Journal of fish biology vol. 86,2 (2015): 605-614. doi: https://doi.org/10.1111/jfb.12595
Yan GJ, He XK, Cao ZD, Fu SJ. Effects of fasting and feeding on the fast-start swimming performance of southern catfish Silurus meridionalis. J Fish Biol. 2015 Feb;86(2):605-614. doi: 10.1111/jfb.12595. Epub 2015 Jan 21. PMID: 25605367.
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DNA hypomethylation of CBS promoter induced by folate deficiency is a potential noninvasive circulating biomarker for colorectal adenocarcinomas.

Oncotarget

Xue G, Lu CJ, Pan SJ, Zhang YL, Miao H, Shan S, Zhu XT, Zhang Y.
PMID: 28881655
Oncotarget. 2017 May 18;8(31):51387-51401. doi: 10.18632/oncotarget.17988. eCollection 2017 Aug 01.

Aberrant DNA methylation patterns, which induced by folate deficiency, play important roles in tumorigenesis of colorectal cancer (CRC). Some DNA methylation alterations can also be detected in cell-free DNA (cfDNA) of patients' plasma, making cfDNA an ideal noninvasive circulating...

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Xue G, Lu CJ, Pan SJ, et al. DNA hypomethylation of CBS promoter induced by folate deficiency is a potential noninvasive circulating biomarker for colorectal adenocarcinomas. Oncotarget. 2017;8(31):51387-51401doi: 10.18632/oncotarget.17988.
Xue, G., Lu, C. J., Pan, S. J., Zhang, Y. L., Miao, H., Shan, S., Zhu, X. T., & Zhang, Y. (2017). DNA hypomethylation of CBS promoter induced by folate deficiency is a potential noninvasive circulating biomarker for colorectal adenocarcinomas. Oncotarget, 8(31), 51387-51401. https://doi.org/10.18632/oncotarget.17988
Xue, Geng, et al. "DNA hypomethylation of CBS promoter induced by folate deficiency is a potential noninvasive circulating biomarker for colorectal adenocarcinomas." Oncotarget vol. 8,31 (2017): 51387-51401. doi: https://doi.org/10.18632/oncotarget.17988
Xue G, Lu CJ, Pan SJ, Zhang YL, Miao H, Shan S, Zhu XT, Zhang Y. DNA hypomethylation of CBS promoter induced by folate deficiency is a potential noninvasive circulating biomarker for colorectal adenocarcinomas. Oncotarget. 2017 May 18;8(31):51387-51401. doi: 10.18632/oncotarget.17988. eCollection 2017 Aug 01. PMID: 28881655; PMCID: PMC5584256.
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Corrigendum to "Protective effects of maslinic acid against alcohol-induced acute liver injury in mice" [Food and Chem. Toxicol. 74 (2014 Dec) 149-55].

Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association

Yan SL, Yang HT, Lee HL, Yin MC.
PMID: 28454635
Food Chem Toxicol. 2017 Aug;106:570. doi: 10.1016/j.fct.2017.04.022. Epub 2017 Apr 26.

No abstract available.

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Yan SL, Yang HT, Lee HL, et al. Corrigendum to "Protective effects of maslinic acid against alcohol-induced acute liver injury in mice" [Food and Chem. Toxicol. 74 (2014 Dec) 149-55]. Food Chem Toxicol. 2017;106:570doi: 10.1016/j.fct.2017.04.022.
Yan, S. L., Yang, H. T., Lee, H. L., & Yin, M. C. (2017). Corrigendum to "Protective effects of maslinic acid against alcohol-induced acute liver injury in mice" [Food and Chem. Toxicol. 74 (2014 Dec) 149-55]. Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association, 106570. https://doi.org/10.1016/j.fct.2017.04.022
Yan, Sheng-Lei, et al. "Corrigendum to "Protective effects of maslinic acid against alcohol-induced acute liver injury in mice" [Food and Chem. Toxicol. 74 (2014 Dec) 149-55]." Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association vol. 106 (2017): 570. doi: https://doi.org/10.1016/j.fct.2017.04.022
Yan SL, Yang HT, Lee HL, Yin MC. Corrigendum to "Protective effects of maslinic acid against alcohol-induced acute liver injury in mice" [Food and Chem. Toxicol. 74 (2014 Dec) 149-55]. Food Chem Toxicol. 2017 Aug;106:570. doi: 10.1016/j.fct.2017.04.022. Epub 2017 Apr 26. PMID: 28454635.
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Reproductive toxicity and gender differences induced by cadmium telluride quantum dots in an invertebrate model organism.

Scientific reports

Yan SQ, Xing R, Zhou YF, Li KL, Su YY, Qiu JF, Zhang YH, Zhang KQ, He Y, Lu XP, Xu SQ.
PMID: 27669995
Sci Rep. 2016 Sep 27;6:34182. doi: 10.1038/srep34182.

Sexual glands are key sites affected by nanotoxicity, but there is no sensitive assay for measuring reproductive toxicity in animals. The aim of this study was to investigate the toxic effects of cadmium telluride quantum dots (CdTe-QDs) on gonads...

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Yan SQ, Xing R, Zhou YF, et al. Reproductive toxicity and gender differences induced by cadmium telluride quantum dots in an invertebrate model organism. Sci Rep. 2016;6:34182doi: 10.1038/srep34182.
Yan, S. Q., Xing, R., Zhou, Y. F., Li, K. L., Su, Y. Y., Qiu, J. F., Zhang, Y. H., Zhang, K. Q., He, Y., Lu, X. P., & Xu, S. Q. (2016). Reproductive toxicity and gender differences induced by cadmium telluride quantum dots in an invertebrate model organism. Scientific reports, 634182. https://doi.org/10.1038/srep34182
Yan, Si-Qi, et al. "Reproductive toxicity and gender differences induced by cadmium telluride quantum dots in an invertebrate model organism." Scientific reports vol. 6 (2016): 34182. doi: https://doi.org/10.1038/srep34182
Yan SQ, Xing R, Zhou YF, Li KL, Su YY, Qiu JF, Zhang YH, Zhang KQ, He Y, Lu XP, Xu SQ. Reproductive toxicity and gender differences induced by cadmium telluride quantum dots in an invertebrate model organism. Sci Rep. 2016 Sep 27;6:34182. doi: 10.1038/srep34182. PMID: 27669995; PMCID: PMC5037452.
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Accurate Modeling of Dark-Field Scattering Spectra of Plasmonic Nanostructures.

ACS nano

Jiang L, Yin T, Dong Z, Liao M, Tan SJ, Goh XM, Allioux D, Hu H, Li X, Yang JK, Shen Z.
PMID: 26344543
ACS Nano. 2015 Oct 27;9(10):10039-46. doi: 10.1021/acsnano.5b03622. Epub 2015 Sep 10.

Dark-field microscopy is a widely used tool for measuring the optical resonance of plasmonic nanostructures. However, current numerical methods for simulating the dark-field scattering spectra were carried out with plane wave illumination either at normal incidence or at an...

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Jiang L, Yin T, Dong Z, et al. Accurate Modeling of Dark-Field Scattering Spectra of Plasmonic Nanostructures. ACS Nano. 2015;9(10):10039-46doi: 10.1021/acsnano.5b03622.
Jiang, L., Yin, T., Dong, Z., Liao, M., Tan, S. J., Goh, X. M., Allioux, D., Hu, H., Li, X., Yang, J. K., & Shen, Z. (2015). Accurate Modeling of Dark-Field Scattering Spectra of Plasmonic Nanostructures. ACS nano, 9(10), 10039-46. https://doi.org/10.1021/acsnano.5b03622
Jiang, Liyong, et al. "Accurate Modeling of Dark-Field Scattering Spectra of Plasmonic Nanostructures." ACS nano vol. 9,10 (2015): 10039-46. doi: https://doi.org/10.1021/acsnano.5b03622
Jiang L, Yin T, Dong Z, Liao M, Tan SJ, Goh XM, Allioux D, Hu H, Li X, Yang JK, Shen Z. Accurate Modeling of Dark-Field Scattering Spectra of Plasmonic Nanostructures. ACS Nano. 2015 Oct 27;9(10):10039-46. doi: 10.1021/acsnano.5b03622. Epub 2015 Sep 10. PMID: 26344543.
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Psychometric Properties of the Diabetes Management Self-Efficacy Scale in Korean Patients with Type 2 Diabetes.

International journal of endocrinology

Lee EH, van der Bijl J, Shortridge-Baggett LM, Han SJ, Moon SH.
PMID: 26089892
Int J Endocrinol. 2015;2015:780701. doi: 10.1155/2015/780701. Epub 2015 May 18.

Objectives. The aims of this study were to perform a cultural translation of the DMSES and evaluate the psychometric properties of the translated scale in a Korean population with type 2 diabetics. Methods. This study was conducted in patients...

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Lee EH, van der Bijl J, Shortridge-Baggett LM, et al. Psychometric Properties of the Diabetes Management Self-Efficacy Scale in Korean Patients with Type 2 Diabetes. Int J Endocrinol. 2015;2015:780701doi: 10.1155/2015/780701.
Lee, E. H., van der Bijl, J., Shortridge-Baggett, L. M., Han, S. J., & Moon, S. H. (2015). Psychometric Properties of the Diabetes Management Self-Efficacy Scale in Korean Patients with Type 2 Diabetes. International journal of endocrinology, 2015780701. https://doi.org/10.1155/2015/780701
Lee, Eun-Hyun, et al. "Psychometric Properties of the Diabetes Management Self-Efficacy Scale in Korean Patients with Type 2 Diabetes." International journal of endocrinology vol. 2015 (2015): 780701. doi: https://doi.org/10.1155/2015/780701
Lee EH, van der Bijl J, Shortridge-Baggett LM, Han SJ, Moon SH. Psychometric Properties of the Diabetes Management Self-Efficacy Scale in Korean Patients with Type 2 Diabetes. Int J Endocrinol. 2015;2015:780701. doi: 10.1155/2015/780701. Epub 2015 May 18. PMID: 26089892; PMCID: PMC4451298.
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Stanene cyanide: a novel candidate of Quantum Spin Hall insulator at high temperature.

Scientific reports

Ji WX, Zhang CW, Ding M, Li P, Li F, Ren MJ, Wang PJ, Hu SJ, Yan SS.
PMID: 26688269
Sci Rep. 2015 Dec 21;5:18604. doi: 10.1038/srep18604.

The search for quantum spin Hall (QSH) insulators with high stability, large and tunable gap and topological robustness, is critical for their realistic application at high temperature. Using first-principle calculations, we predict the cyanogen saturated stanene SnCN as novel...

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Ji WX, Zhang CW, Ding M, et al. Stanene cyanide: a novel candidate of Quantum Spin Hall insulator at high temperature. Sci Rep. 2015;5:18604doi: 10.1038/srep18604.
Ji, W. X., Zhang, C. W., Ding, M., Li, P., Li, F., Ren, M. J., Wang, P. J., Hu, S. J., & Yan, S. S. (2015). Stanene cyanide: a novel candidate of Quantum Spin Hall insulator at high temperature. Scientific reports, 518604. https://doi.org/10.1038/srep18604
Ji, Wei-Xiao, et al. "Stanene cyanide: a novel candidate of Quantum Spin Hall insulator at high temperature." Scientific reports vol. 5 (2015): 18604. doi: https://doi.org/10.1038/srep18604
Ji WX, Zhang CW, Ding M, Li P, Li F, Ren MJ, Wang PJ, Hu SJ, Yan SS. Stanene cyanide: a novel candidate of Quantum Spin Hall insulator at high temperature. Sci Rep. 2015 Dec 21;5:18604. doi: 10.1038/srep18604. PMID: 26688269; PMCID: PMC4685648.
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A case of triple pathology: seronegative anti-glomerular basement membrane antibody-mediated glomerulonephritis and membranous nephropathy in a patient with underlying diabetic kidney disease.

Clinical kidney journal

Tan SJ, Ducharlet K, Dwyer KM, Myers D, Langham RG, Hill PA.
PMID: 26064494
Clin Kidney J. 2013 Jun;6(3):322-6. doi: 10.1093/ckj/sft043.

In diabetic patients with acute kidney injury (AKI), kidney biopsy often reveals non-diabetic kidney pathology. This case describes a patient with known Type 1 diabetes who presented with AKI, nephrotic syndrome and haematuria. Combination pathology of seronegative anti-glomerular basement...

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Tan SJ, Ducharlet K, Dwyer KM, et al. A case of triple pathology: seronegative anti-glomerular basement membrane antibody-mediated glomerulonephritis and membranous nephropathy in a patient with underlying diabetic kidney disease. Clin Kidney J. 2013;6(3):322-6doi: 10.1093/ckj/sft043.
Tan, S. J., Ducharlet, K., Dwyer, K. M., Myers, D., Langham, R. G., & Hill, P. A. (2013). A case of triple pathology: seronegative anti-glomerular basement membrane antibody-mediated glomerulonephritis and membranous nephropathy in a patient with underlying diabetic kidney disease. Clinical kidney journal, 6(3), 322-6. https://doi.org/10.1093/ckj/sft043
Tan, Sven-Jean, et al. "A case of triple pathology: seronegative anti-glomerular basement membrane antibody-mediated glomerulonephritis and membranous nephropathy in a patient with underlying diabetic kidney disease." Clinical kidney journal vol. 6,3 (2013): 322-6. doi: https://doi.org/10.1093/ckj/sft043
Tan SJ, Ducharlet K, Dwyer KM, Myers D, Langham RG, Hill PA. A case of triple pathology: seronegative anti-glomerular basement membrane antibody-mediated glomerulonephritis and membranous nephropathy in a patient with underlying diabetic kidney disease. Clin Kidney J. 2013 Jun;6(3):322-6. doi: 10.1093/ckj/sft043. PMID: 26064494; PMCID: PMC4400487.
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Dirac cone move and bandgap on/off switching of graphene superlattice.

Scientific reports

Jia TT, Zheng MM, Fan XY, Su Y, Li SJ, Liu HY, Chen G, Kawazoe Y.
PMID: 26732904
Sci Rep. 2016 Jan 06;6:18869. doi: 10.1038/srep18869.

Using the density functional theory with generalized gradient approximation, we have studied in detail the cooperative effects of degenerate perturbation and uniaxial strain on bandgap opening in graphene. The uniaxial strain could split π bands into πa and πz...

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Jia TT, Zheng MM, Fan XY, et al. Dirac cone move and bandgap on/off switching of graphene superlattice. Sci Rep. 2016;6:18869doi: 10.1038/srep18869.
Jia, T. T., Zheng, M. M., Fan, X. Y., Su, Y., Li, S. J., Liu, H. Y., Chen, G., & Kawazoe, Y. (2016). Dirac cone move and bandgap on/off switching of graphene superlattice. Scientific reports, 618869. https://doi.org/10.1038/srep18869
Jia, Tian-Tian, et al. "Dirac cone move and bandgap on/off switching of graphene superlattice." Scientific reports vol. 6 (2016): 18869. doi: https://doi.org/10.1038/srep18869
Jia TT, Zheng MM, Fan XY, Su Y, Li SJ, Liu HY, Chen G, Kawazoe Y. Dirac cone move and bandgap on/off switching of graphene superlattice. Sci Rep. 2016 Jan 06;6:18869. doi: 10.1038/srep18869. PMID: 26732904; PMCID: PMC4702062.
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Higher locoregional recurrence rate for triple-negative breast cancer following neoadjuvant chemotherapy, surgery and radiotherapy.

SpringerPlus

Zhang C, Wang S, Israel HP, Yan SX, Horowitz DP, Crockford S, Gidea-Addeo D, Clifford Chao KS, Kalinsky K, Connolly EP.
PMID: 26240784
Springerplus. 2015 Jul 30;4:386. doi: 10.1186/s40064-015-1116-2. eCollection 2015.

BACKGROUND: Breast cancer subtype, determined by expression of estrogen/progesterone receptor (ER/PR) and human epidermal growth factor receptor (HER)-2, is predictive for prognosis. The importance of subtype to locoregional recurrence (LRR) following neoadjuvant chemotherapy (NAC) is unknown, particularly after adjuvant...

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Zhang C, Wang S, Israel HP, et al. Higher locoregional recurrence rate for triple-negative breast cancer following neoadjuvant chemotherapy, surgery and radiotherapy. Springerplus. 2015;4:386doi: 10.1186/s40064-015-1116-2.
Zhang, C., Wang, S., Israel, H. P., Yan, S. X., Horowitz, D. P., Crockford, S., Gidea-Addeo, D., Clifford Chao, K. S., Kalinsky, K., & Connolly, E. P. (2015). Higher locoregional recurrence rate for triple-negative breast cancer following neoadjuvant chemotherapy, surgery and radiotherapy. SpringerPlus, 4386. https://doi.org/10.1186/s40064-015-1116-2
Zhang, Chi, et al. "Higher locoregional recurrence rate for triple-negative breast cancer following neoadjuvant chemotherapy, surgery and radiotherapy." SpringerPlus vol. 4 (2015): 386. doi: https://doi.org/10.1186/s40064-015-1116-2
Zhang C, Wang S, Israel HP, Yan SX, Horowitz DP, Crockford S, Gidea-Addeo D, Clifford Chao KS, Kalinsky K, Connolly EP. Higher locoregional recurrence rate for triple-negative breast cancer following neoadjuvant chemotherapy, surgery and radiotherapy. Springerplus. 2015 Jul 30;4:386. doi: 10.1186/s40064-015-1116-2. eCollection 2015. PMID: 26240784; PMCID: PMC4519490.
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Showing 1 to 12 of 1308 entries