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Stochastic chemical kinetics : A review of the modelling and simulation approaches.

Biophysical reviews

Lecca P.
PMID: 28510113
Biophys Rev. 2013 Dec;5(4):323-345. doi: 10.1007/s12551-013-0122-2. Epub 2013 Jul 30.

A review of the physical principles that are the ground of the stochastic formulation of chemical kinetics is presented along with a survey of the algorithms currently used to simulate it. This review covers the main literature of the...

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Lecca P. Stochastic chemical kinetics : A review of the modelling and simulation approaches. Biophys Rev. 2013;5(4):323-345doi: 10.1007/s12551-013-0122-2.
Lecca, P. (2013). Stochastic chemical kinetics : A review of the modelling and simulation approaches. Biophysical reviews, 5(4), 323-345. https://doi.org/10.1007/s12551-013-0122-2
Lecca, Paola. "Stochastic chemical kinetics : A review of the modelling and simulation approaches." Biophysical reviews vol. 5,4 (2013): 323-345. doi: https://doi.org/10.1007/s12551-013-0122-2
Lecca P. Stochastic chemical kinetics : A review of the modelling and simulation approaches. Biophys Rev. 2013 Dec;5(4):323-345. doi: 10.1007/s12551-013-0122-2. Epub 2013 Jul 30. PMID: 28510113; PMCID: PMC5425731.
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Identification of Leukotoxin and other vaccine candidate proteins in a .

Heliyon

Tucci P, Estevez V, Becco L, Cabrera-Cabrera F, Grotiuz G, Reolon E, Marín M.
PMID: 27699279
Heliyon. 2016 Sep 19;2(9):e00158. doi: 10.1016/j.heliyon.2016.e00158. eCollection 2016 Sep.

Bovine Respiratory Disease is the most costly disease that affects beef and dairy cattle industry. Its etiology is multifactorial, arising from predisposing environmental stress conditions as well as the action of several different respiratory pathogens. This situation has hindered...

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Tucci P, Estevez V, Becco L, et al. Identification of Leukotoxin and other vaccine candidate proteins in a . Heliyon. 2016;2(9):e00158doi: 10.1016/j.heliyon.2016.e00158.
Tucci, P., Estevez, V., Becco, L., Cabrera-Cabrera, F., Grotiuz, G., Reolon, E., & Marín, M. (2016). Identification of Leukotoxin and other vaccine candidate proteins in a . Heliyon, 2(9), e00158. https://doi.org/10.1016/j.heliyon.2016.e00158
Tucci, Paula, et al. "Identification of Leukotoxin and other vaccine candidate proteins in a ." Heliyon vol. 2,9 (2016): e00158. doi: https://doi.org/10.1016/j.heliyon.2016.e00158
Tucci P, Estevez V, Becco L, Cabrera-Cabrera F, Grotiuz G, Reolon E, Marín M. Identification of Leukotoxin and other vaccine candidate proteins in a . Heliyon. 2016 Sep 19;2(9):e00158. doi: 10.1016/j.heliyon.2016.e00158. eCollection 2016 Sep. PMID: 27699279; PMCID: PMC5035357.
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Life-threatening asthma attack during prolonged fingolimod treatment: case report.

Patient preference and adherence

Zecca C, Caporro M, Györik S, Gobbi C.
PMID: 25053881
Patient Prefer Adherence. 2014 Jul 14;8:987-9. doi: 10.2147/PPA.S65708. eCollection 2014.

BACKGROUND: Fingolimod (FTY) mediates bronchoconstriction by interacting with sphingosine-1-phosphate receptors. The majority of the reported adverse respiratory events occur during the first weeks of treatment.CASE PRESENTATION: A 49-year-old woman developed a life-threatening asthma attack after 6 months of continuous...

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Zecca C, Caporro M, Györik S, et al. Life-threatening asthma attack during prolonged fingolimod treatment: case report. Patient Prefer Adherence. 2014;8:987-9doi: 10.2147/PPA.S65708.
Zecca, C., Caporro, M., Györik, S., & Gobbi, C. (2014). Life-threatening asthma attack during prolonged fingolimod treatment: case report. Patient preference and adherence, 8987-9. https://doi.org/10.2147/PPA.S65708
Zecca, Chiara, et al. "Life-threatening asthma attack during prolonged fingolimod treatment: case report." Patient preference and adherence vol. 8 (2014): 987-9. doi: https://doi.org/10.2147/PPA.S65708
Zecca C, Caporro M, Györik S, Gobbi C. Life-threatening asthma attack during prolonged fingolimod treatment: case report. Patient Prefer Adherence. 2014 Jul 14;8:987-9. doi: 10.2147/PPA.S65708. eCollection 2014. PMID: 25053881; PMCID: PMC4105229.
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Bulk Surfaces Coated with Triangular Silver Nanoplates: Antibacterial Action Based on Silver Release and Photo-Thermal Effect.

Nanomaterials (Basel, Switzerland)

D'Agostino A, Taglietti A, Desando R, Bini M, Patrini M, Dacarro G, Cucca L, Pallavicini P, Grisoli P.
PMID: 28336841
Nanomaterials (Basel). 2017 Jan 06;7(1). doi: 10.3390/nano7010007.

A layer of silver nanoplates, specifically synthesized with the desired localized surface plasmon resonance (LSPR) features, was grafted on amino-functionalized bulk glass surfaces to impart a double antibacterial action: (i) the well-known, long-term antibacterial effect based on the release...

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D'Agostino A, Taglietti A, Desando R, et al. Bulk Surfaces Coated with Triangular Silver Nanoplates: Antibacterial Action Based on Silver Release and Photo-Thermal Effect. Nanomaterials (Basel). 2017;7(1)doi: 10.3390/nano7010007.
D'Agostino, A., Taglietti, A., Desando, R., Bini, M., Patrini, M., Dacarro, G., Cucca, L., Pallavicini, P., & Grisoli, P. (2017). Bulk Surfaces Coated with Triangular Silver Nanoplates: Antibacterial Action Based on Silver Release and Photo-Thermal Effect. Nanomaterials (Basel, Switzerland), 7(1), . https://doi.org/10.3390/nano7010007
D'Agostino, Agnese, et al. "Bulk Surfaces Coated with Triangular Silver Nanoplates: Antibacterial Action Based on Silver Release and Photo-Thermal Effect." Nanomaterials (Basel, Switzerland) vol. 7,1 (2017). doi: https://doi.org/10.3390/nano7010007
D'Agostino A, Taglietti A, Desando R, Bini M, Patrini M, Dacarro G, Cucca L, Pallavicini P, Grisoli P. Bulk Surfaces Coated with Triangular Silver Nanoplates: Antibacterial Action Based on Silver Release and Photo-Thermal Effect. Nanomaterials (Basel). 2017 Jan 06;7(1). doi: 10.3390/nano7010007. PMID: 28336841; PMCID: PMC5295197.
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Activity enhancement by the support in the hydrogenation of C=C bonds over polymer-supported palladium catalysts.

Chemistry (Weinheim an der Bergstrasse, Germany)

Zecca M, Fisera R, Palma G, Lora S, Hronec M, Kralik M.
PMID: 10894397
Chemistry. 2000 Jun 02;6(11):1980-6. doi: 10.1002/1521-3765(20000602)6:11<1980::aid-chem1980>3.0.co;2-z.

Four synthetic ion-exchange resins (AH, BH, CH, DH) of different hydrophilic/hydrophobic properties were used as supports for heterogeneous palladium catalysts (A, B, C, D). The resins contained styrene (STY) and 2-(methacryloxy)ethylsulfonic acid (MESA) as the comonomers. Either divinylbenzene (DVB:...

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Zecca M, Fisera R, Palma G, et al. Activity enhancement by the support in the hydrogenation of C=C bonds over polymer-supported palladium catalysts. Chemistry. 2000;6(11):1980-6doi: 10.1002/1521-3765(20000602)6:11<1980::aid-chem1980>3.0.co;2-z.
Zecca, M., Fisera, R., Palma, G., Lora, S., Hronec, M., & Kralik, M. (2000). Activity enhancement by the support in the hydrogenation of C=C bonds over polymer-supported palladium catalysts. Chemistry (Weinheim an der Bergstrasse, Germany), 6(11), 1980-6. https://doi.org/10.1002/1521-3765(20000602)6:11<1980::aid-chem1980>3.0.co;2-z
Zecca, et al. "Activity enhancement by the support in the hydrogenation of C=C bonds over polymer-supported palladium catalysts." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 6,11 (2000): 1980-6. doi: https://doi.org/10.1002/1521-3765(20000602)6:11<1980::aid-chem1980>3.0.co;2-z
Zecca M, Fisera R, Palma G, Lora S, Hronec M, Kralik M. Activity enhancement by the support in the hydrogenation of C=C bonds over polymer-supported palladium catalysts. Chemistry. 2000 Jun 02;6(11):1980-6. doi: 10.1002/1521-3765(20000602)6:11<1980::aid-chem1980>3.0.co;2-z. PMID: 10894397.
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Peierls-like transition induced by frustration in a two-dimensional antiferromagnet.

Physical review letters

Becca F, Mila F.
PMID: 12144417
Phys Rev Lett. 2002 Jul 15;89(3):037204. doi: 10.1103/PhysRevLett.89.037204. Epub 2002 Jul 01.

We show that the introduction of frustration into the spin- 1/2 two-dimensional (2D) antiferromagnetic Heisenberg model on a square lattice via a next-nearest-neighbor exchange interaction can lead to a Peierls-like transition, from a tetragonal to an orthorhombic phase, when...

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Becca F, Mila F. Peierls-like transition induced by frustration in a two-dimensional antiferromagnet. Phys Rev Lett. 2002;89(3):037204doi: 10.1103/PhysRevLett.89.037204.
Becca, F., & Mila, F. (2002). Peierls-like transition induced by frustration in a two-dimensional antiferromagnet. Physical review letters, 89(3), 037204. https://doi.org/10.1103/PhysRevLett.89.037204
Becca, Federico, and Mila, Frédéric. "Peierls-like transition induced by frustration in a two-dimensional antiferromagnet." Physical review letters vol. 89,3 (2002): 037204. doi: https://doi.org/10.1103/PhysRevLett.89.037204
Becca F, Mila F. Peierls-like transition induced by frustration in a two-dimensional antiferromagnet. Phys Rev Lett. 2002 Jul 15;89(3):037204. doi: 10.1103/PhysRevLett.89.037204. Epub 2002 Jul 01. PMID: 12144417.
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Determination of inorganic beryllium species in the particulate matter of emissions and working areas.

Talanta

Profumo A, Spini G, Cucca L, Pesavento M.
PMID: 18968697
Talanta. 2002 Jul 03;57(5):929-34. doi: 10.1016/s0039-9140(02)00134-0.

A sequential extraction procedure for separating and determining Be(0), soluble Be(II) inorganic compounds, BeO and beryllium silicates in samples such as particulate matter of emissions and working areas, has been developed. The proposed procedure has been tested on synthetic...

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Profumo A, Spini G, Cucca L, et al. Determination of inorganic beryllium species in the particulate matter of emissions and working areas. Talanta. 2002;57(5):929-34doi: 10.1016/s0039-9140(02)00134-0.
Profumo, A., Spini, G., Cucca, L., & Pesavento, M. (2002). Determination of inorganic beryllium species in the particulate matter of emissions and working areas. Talanta, 57(5), 929-34. https://doi.org/10.1016/s0039-9140(02)00134-0
Profumo, A, et al. "Determination of inorganic beryllium species in the particulate matter of emissions and working areas." Talanta vol. 57,5 (2002): 929-34. doi: https://doi.org/10.1016/s0039-9140(02)00134-0
Profumo A, Spini G, Cucca L, Pesavento M. Determination of inorganic beryllium species in the particulate matter of emissions and working areas. Talanta. 2002 Jul 03;57(5):929-34. doi: 10.1016/s0039-9140(02)00134-0. PMID: 18968697.
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Variational description of Mott insulators.

Physical review letters

Capello M, Becca F, Fabrizio M, Sorella S, Tosatti E.
PMID: 15698205
Phys Rev Lett. 2005 Jan 21;94(2):026406. doi: 10.1103/PhysRevLett.94.026406. Epub 2005 Jan 20.

The Gutzwiller wave function for a strongly correlated model can, if supplemented with a long-range Jastrow factor, provide a proper variational description of Mott insulators, so far unavailable. We demonstrate this concept in the prototypical one-dimensional t-t(') Hubbard model,...

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Capello M, Becca F, Fabrizio M, et al. Variational description of Mott insulators. Phys Rev Lett. 2005;94(2):026406doi: 10.1103/PhysRevLett.94.026406.
Capello, M., Becca, F., Fabrizio, M., Sorella, S., & Tosatti, E. (2005). Variational description of Mott insulators. Physical review letters, 94(2), 026406. https://doi.org/10.1103/PhysRevLett.94.026406
Capello, Manuela, et al. "Variational description of Mott insulators." Physical review letters vol. 94,2 (2005): 026406. doi: https://doi.org/10.1103/PhysRevLett.94.026406
Capello M, Becca F, Fabrizio M, Sorella S, Tosatti E. Variational description of Mott insulators. Phys Rev Lett. 2005 Jan 21;94(2):026406. doi: 10.1103/PhysRevLett.94.026406. Epub 2005 Jan 20. PMID: 15698205.
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Characterization of an enzyme linked immunosorbent assay for Aflatoxin B(1) based on commercial reagents.

Talanta

Pesavento M, Domagala S, Baldini E, Cucca L.
PMID: 18966984
Talanta. 1997 Dec 12;45(1):91-104. doi: 10.1016/s0039-9140(97)00115-x.

Two indirect ELISA have been investigated for the determination of Aflatoxin B(1), employing only reagents commercially available, whose composition is not exactly known. In both cases the antigen (Aflatoxin B(1)-BSA) was coated to the solid phase (polystyrene microtiter plates)....

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Pesavento M, Domagala S, Baldini E, et al. Characterization of an enzyme linked immunosorbent assay for Aflatoxin B(1) based on commercial reagents. Talanta. 1997;45(1):91-104doi: 10.1016/s0039-9140(97)00115-x.
Pesavento, M., Domagala, S., Baldini, E., & Cucca, L. (1997). Characterization of an enzyme linked immunosorbent assay for Aflatoxin B(1) based on commercial reagents. Talanta, 45(1), 91-104. https://doi.org/10.1016/s0039-9140(97)00115-x
Pesavento, M, et al. "Characterization of an enzyme linked immunosorbent assay for Aflatoxin B(1) based on commercial reagents." Talanta vol. 45,1 (1997): 91-104. doi: https://doi.org/10.1016/s0039-9140(97)00115-x
Pesavento M, Domagala S, Baldini E, Cucca L. Characterization of an enzyme linked immunosorbent assay for Aflatoxin B(1) based on commercial reagents. Talanta. 1997 Dec 12;45(1):91-104. doi: 10.1016/s0039-9140(97)00115-x. PMID: 18966984.
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Highly hydrophilic copolymers of N,N-dimethylacrylamide, acrylamido-2-methylpropanesulfonic acid, and ethylenedimethacrylate: nanoscale morphology in the swollen state and use as exotemplates for synthesis of nanostructured ferric oxide.

Chemistry (Weinheim an der Bergstrasse, Germany)

Centomo P, Jeřábek K, Canova D, Zoleo A, Maniero AL, Sassi A, Canton P, Corain B, Zecca M.
PMID: 22461082
Chemistry. 2012 May 21;18(21):6632-43. doi: 10.1002/chem.201102359. Epub 2012 Mar 29.

The polymer framework of water-swollen copolymers of N,N-dimethylacrylamide, acrylamido-2-methylpropanesulfonic acid, and ethylenedimethacrylate (nominal cross-linking degrees of 4, 8, and 20 mol %) is composed of highly expanded domains, with "pores" not less than 6 nm in diameter. When the...

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Centomo P, Jeřábek K, Canova D, et al. Highly hydrophilic copolymers of N,N-dimethylacrylamide, acrylamido-2-methylpropanesulfonic acid, and ethylenedimethacrylate: nanoscale morphology in the swollen state and use as exotemplates for synthesis of nanostructured ferric oxide. Chemistry. 2012;18(21):6632-43doi: 10.1002/chem.201102359.
Centomo, P., Jeřábek, K., Canova, D., Zoleo, A., Maniero, A. L., Sassi, A., Canton, P., Corain, B., & Zecca, M. (2012). Highly hydrophilic copolymers of N,N-dimethylacrylamide, acrylamido-2-methylpropanesulfonic acid, and ethylenedimethacrylate: nanoscale morphology in the swollen state and use as exotemplates for synthesis of nanostructured ferric oxide. Chemistry (Weinheim an der Bergstrasse, Germany), 18(21), 6632-43. https://doi.org/10.1002/chem.201102359
Centomo, Paolo, et al. "Highly hydrophilic copolymers of N,N-dimethylacrylamide, acrylamido-2-methylpropanesulfonic acid, and ethylenedimethacrylate: nanoscale morphology in the swollen state and use as exotemplates for synthesis of nanostructured ferric oxide." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 18,21 (2012): 6632-43. doi: https://doi.org/10.1002/chem.201102359
Centomo P, Jeřábek K, Canova D, Zoleo A, Maniero AL, Sassi A, Canton P, Corain B, Zecca M. Highly hydrophilic copolymers of N,N-dimethylacrylamide, acrylamido-2-methylpropanesulfonic acid, and ethylenedimethacrylate: nanoscale morphology in the swollen state and use as exotemplates for synthesis of nanostructured ferric oxide. Chemistry. 2012 May 21;18(21):6632-43. doi: 10.1002/chem.201102359. Epub 2012 Mar 29. PMID: 22461082.
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Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks.

Computational biology and chemistry

Damiani C, Filisetti A, Graudenzi A, Lecca P.
PMID: 23246776
Comput Biol Chem. 2013 Feb;42:5-17. doi: 10.1016/j.compbiolchem.2012.10.007. Epub 2012 Nov 07.

A general numerical methodology for parametric sensitivity analysis is proposed, which allows to determine the parameters exerting the greatest influence on the output of a stochastic computational model, especially when the knowledge about the actual value of a parameter...

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Damiani C, Filisetti A, Graudenzi A, et al. Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks. Comput Biol Chem. 2012;42:5-17doi: 10.1016/j.compbiolchem.2012.10.007.
Damiani, C., Filisetti, A., Graudenzi, A., & Lecca, P. (2013). Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks. Computational biology and chemistry, 425-17. https://doi.org/10.1016/j.compbiolchem.2012.10.007
Damiani, Chiara, et al. "Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks." Computational biology and chemistry vol. 42 (2013): 5-17. doi: https://doi.org/10.1016/j.compbiolchem.2012.10.007
Damiani C, Filisetti A, Graudenzi A, Lecca P. Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks. Comput Biol Chem. 2013 Feb;42:5-17. doi: 10.1016/j.compbiolchem.2012.10.007. Epub 2012 Nov 07. PMID: 23246776.
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A spontaneous decrease of blood pressure occurs in acute ischemic stroke with favourable neurological course.

The open neurology journal

Rossi P, Mandelli C, Manganaro D, Zecca B, Maestroni A, Monzani V, Torgano G.
PMID: 21760858
Open Neurol J. 2011;5:48-54. doi: 10.2174/1874205X01105010048. Epub 2011 Jun 21.

BACKGROUND: In the acute phase of ischemic stroke the relationship between blood pressure (BP) and clinical outcome remains not clear. The aim of our study was to evaluate the association of stroke severity and BP measurements in the acute...

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Rossi P, Mandelli C, Manganaro D, et al. A spontaneous decrease of blood pressure occurs in acute ischemic stroke with favourable neurological course. Open Neurol J. 2011;5:48-54doi: 10.2174/1874205X01105010048.
Rossi, P., Mandelli, C., Manganaro, D., Zecca, B., Maestroni, A., Monzani, V., & Torgano, G. (2011). A spontaneous decrease of blood pressure occurs in acute ischemic stroke with favourable neurological course. The open neurology journal, 548-54. https://doi.org/10.2174/1874205X01105010048
Rossi, P, et al. "A spontaneous decrease of blood pressure occurs in acute ischemic stroke with favourable neurological course." The open neurology journal vol. 5 (2011): 48-54. doi: https://doi.org/10.2174/1874205X01105010048
Rossi P, Mandelli C, Manganaro D, Zecca B, Maestroni A, Monzani V, Torgano G. A spontaneous decrease of blood pressure occurs in acute ischemic stroke with favourable neurological course. Open Neurol J. 2011;5:48-54. doi: 10.2174/1874205X01105010048. Epub 2011 Jun 21. PMID: 21760858; PMCID: PMC3134949.
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Showing 1 to 12 of 292 entries