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Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions

Science interventions

Dehning J, Zierenberg J, Spitzner FP, Wibral M.
GSID: mKp2JsCO3sUJ
J Dehning, J Zierenberg, FP Spitzner, M Wibral… - Science, 2020 - science.org

… of interventions matter for the mitigation of the outbreak To simulate the effect of different possible interventions, we modeled the effects of interventions … We considered different, hypothetical interventions after the initial phase to show that both the...

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Dehning, J., Zierenberg, J., Spitzner, F. P., Wibral, M., Neto, J. P., Wilczek, M., & Priesemann, V. (2020). Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions. Science, 369(6500), eabb9789.
Dehning, Jonas, et al. "Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions." Science 369.6500 (2020): eabb9789.
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Draft genome of the fungus-growing termite pathogenic fungus .

Data in brief

Conlon BH, Mitchell J, de Beer ZW, Carøe C, Gilbert MT, Eilenberg J, Poulsen M, de Fine Licht HH.
PMID: 28349099
Data Brief. 2017 Mar 08;11:537-542. doi: 10.1016/j.dib.2017.02.051. eCollection 2017 Apr.

This article documents the public availability of genome sequence data and assembled contigs representing the partial draft genome of

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Conlon BH, Mitchell J, de Beer ZW, et al. Draft genome of the fungus-growing termite pathogenic fungus . Data Brief. 2017;11:537-542doi: 10.1016/j.dib.2017.02.051.
Conlon, B. H., Mitchell, J., de Beer, Z. W., Carøe, C., Gilbert, M. T., Eilenberg, J., Poulsen, M., & de Fine Licht, H. H. (2017). Draft genome of the fungus-growing termite pathogenic fungus . Data in brief, 11537-542. https://doi.org/10.1016/j.dib.2017.02.051
Conlon, Benjamin H, et al. "Draft genome of the fungus-growing termite pathogenic fungus ." Data in brief vol. 11 (2017): 537-542. doi: https://doi.org/10.1016/j.dib.2017.02.051
Conlon BH, Mitchell J, de Beer ZW, Carøe C, Gilbert MT, Eilenberg J, Poulsen M, de Fine Licht HH. Draft genome of the fungus-growing termite pathogenic fungus . Data Brief. 2017 Mar 08;11:537-542. doi: 10.1016/j.dib.2017.02.051. eCollection 2017 Apr. PMID: 28349099; PMCID: PMC5357700.
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Crosstalk between the HpArsRS two-component system and HpNikR is necessary for maximal activation of urease transcription.

Frontiers in microbiology

Carpenter BM, West AL, Gancz H, Servetas SL, Pich OQ, Gilbreath JJ, Hallinger DR, Forsyth MH, Merrell DS, Michel SL, Contreras S, Dehning J, Loidolt M, Zierenberg J.
PMID: 26124751
Front Microbiol. 2015 Jun 12;6:558. doi: 10.3389/fmicb.2015.00558. eCollection 2015.

Helicobacter pylori NikR (HpNikR) is a nickel dependent transcription factor that directly regulates a number of genes in this important gastric pathogen. One key gene that is regulated by HpNikR is ureA, which encodes for the urease enzyme. In...

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Carpenter BM, West AL, Gancz H, et al. Crosstalk between the HpArsRS two-component system and HpNikR is necessary for maximal activation of urease transcription. Front Microbiol. 2015;6:558doi: 10.3389/fmicb.2015.00558.
Carpenter, B. M., West, A. L., Gancz, H., Servetas, S. L., Pich, O. Q., Gilbreath, J. J., Hallinger, D. R., Forsyth, M. H., Merrell, D. S., Michel, S. L., Contreras, S., Dehning, J., Loidolt, M., & Zierenberg, J. (2015). Crosstalk between the HpArsRS two-component system and HpNikR is necessary for maximal activation of urease transcription. Frontiers in microbiology, 6558. https://doi.org/10.3389/fmicb.2015.00558
Carpenter, Beth M, et al. "Crosstalk between the HpArsRS two-component system and HpNikR is necessary for maximal activation of urease transcription." Frontiers in microbiology vol. 6 (2015): 558. doi: https://doi.org/10.3389/fmicb.2015.00558
Carpenter BM, West AL, Gancz H, Servetas SL, Pich OQ, Gilbreath JJ, Hallinger DR, Forsyth MH, Merrell DS, Michel SL, Contreras S, Dehning J, Loidolt M, Zierenberg J. Crosstalk between the HpArsRS two-component system and HpNikR is necessary for maximal activation of urease transcription. Front Microbiol. 2015 Jun 12;6:558. doi: 10.3389/fmicb.2015.00558. eCollection 2015. PMID: 26124751; PMCID: PMC4464171.
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CD8.

Oncoimmunology

Fritzsching B, Fellenberg J, Moskovszky L, Sápi Z, Krenacs T, Machado I, Poeschl J, Lehner B, Szendrõi M, Bosch AL, Bernd L, Csóka M, Mechtersheimer G, Ewerbeck V, Kinscherf R, Kunz P.
PMID: 25949908
Oncoimmunology. 2015 Apr 02;4(3):e990800. doi: 10.4161/2162402X.2014.990800. eCollection 2015 Mar.

Osteosarcoma is the most common primary bone tumor characterized by juvenile onset, tumor heterogeneity, and early pulmonary metastasis. Therapeutic improvement stagnates since more than two decades. Unlike major malignancies, biomarkers as prognostic factors at time of diagnosis are missing....

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Fritzsching B, Fellenberg J, Moskovszky L, et al. CD8. Oncoimmunology. 2015;4(3):e990800doi: 10.4161/2162402X.2014.990800.
Fritzsching, B., Fellenberg, J., Moskovszky, L., Sápi, Z., Krenacs, T., Machado, I., Poeschl, J., Lehner, B., Szendrõi, M., Bosch, A. L., Bernd, L., Csóka, M., Mechtersheimer, G., Ewerbeck, V., Kinscherf, R., & Kunz, P. (2015). CD8. Oncoimmunology, 4(3), e990800. https://doi.org/10.4161/2162402X.2014.990800
Fritzsching, Benedikt, et al. "CD8." Oncoimmunology vol. 4,3 (2015): e990800. doi: https://doi.org/10.4161/2162402X.2014.990800
Fritzsching B, Fellenberg J, Moskovszky L, Sápi Z, Krenacs T, Machado I, Poeschl J, Lehner B, Szendrõi M, Bosch AL, Bernd L, Csóka M, Mechtersheimer G, Ewerbeck V, Kinscherf R, Kunz P. CD8. Oncoimmunology. 2015 Apr 02;4(3):e990800. doi: 10.4161/2162402X.2014.990800. eCollection 2015 Mar. PMID: 25949908; PMCID: PMC4404826.
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The Role of Mindful Parenting in Individual and Social Decision-Making in Children.

Frontiers in psychology

Wong K, Hicks LM, Seuntjens TG, Trentacosta CJ, Hendriksen THG, Zeelenberg M, van den Heuvel MI.
PMID: 30949094
Front Psychol. 2019 Mar 20;10:550. doi: 10.3389/fpsyg.2019.00550. eCollection 2019.

Children are confronted with an increasing amount of choices every day, which can be stressful. Decision-making skills may be one of the most important "21st century skills" that children need to master to ensure success. Many aspects of decision-making,...

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Wong K, Hicks LM, Seuntjens TG, et al. The Role of Mindful Parenting in Individual and Social Decision-Making in Children. Front Psychol. 2019;10:550doi: 10.3389/fpsyg.2019.00550.
Wong, K., Hicks, L. M., Seuntjens, T. G., Trentacosta, C. J., Hendriksen, T. H. G., Zeelenberg, M., & van den Heuvel, M. I. (2019). The Role of Mindful Parenting in Individual and Social Decision-Making in Children. Frontiers in psychology, 10550. https://doi.org/10.3389/fpsyg.2019.00550
Wong, Kristyn, et al. "The Role of Mindful Parenting in Individual and Social Decision-Making in Children." Frontiers in psychology vol. 10 (2019): 550. doi: https://doi.org/10.3389/fpsyg.2019.00550
Wong K, Hicks LM, Seuntjens TG, Trentacosta CJ, Hendriksen THG, Zeelenberg M, van den Heuvel MI. The Role of Mindful Parenting in Individual and Social Decision-Making in Children. Front Psychol. 2019 Mar 20;10:550. doi: 10.3389/fpsyg.2019.00550. eCollection 2019. PMID: 30949094; PMCID: PMC6435956.
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Evidence for Opportunity Cost Neglect in the Poor.

Journal of behavioral decision making

Plantinga A, Krijnen JMT, Zeelenberg M, Breugelmans SM.
PMID: 29353963
J Behav Decis Mak. 2018 Jan;31(1):65-73. doi: 10.1002/bdm.2041. Epub 2017 Sep 11.

People often neglect opportunity costs: They do not fully take into account forgone alternatives outside of a particular choice set. Several scholars have suggested that poor people should be more likely to spontaneously consider opportunity costs, because budget constraints...

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Plantinga A, Krijnen JMT, Zeelenberg M, et al. Evidence for Opportunity Cost Neglect in the Poor. J Behav Decis Mak. 2017;31(1):65-73doi: 10.1002/bdm.2041.
Plantinga, A., Krijnen, J. M. T., Zeelenberg, M., & Breugelmans, S. M. (2018). Evidence for Opportunity Cost Neglect in the Poor. Journal of behavioral decision making, 31(1), 65-73. https://doi.org/10.1002/bdm.2041
Plantinga, Arnoud, et al. "Evidence for Opportunity Cost Neglect in the Poor." Journal of behavioral decision making vol. 31,1 (2018): 65-73. doi: https://doi.org/10.1002/bdm.2041
Plantinga A, Krijnen JMT, Zeelenberg M, Breugelmans SM. Evidence for Opportunity Cost Neglect in the Poor. J Behav Decis Mak. 2018 Jan;31(1):65-73. doi: 10.1002/bdm.2041. Epub 2017 Sep 11. PMID: 29353963; PMCID: PMC5763356.
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An exploration of third parties' preference for compensation over punishment: six experimental demonstrations.

Theory and decision

van Doorn J, Zeelenberg M, Breugelmans SM.
PMID: 30956365
Theory Decis. 2018;85(3):333-351. doi: 10.1007/s11238-018-9665-9. Epub 2018 May 14.

Research suggests that to restore equity, third parties prefer compensation of a victim over the punishment of a perpetrator. It remains unclear, however, whether this preference for compensation is stable or specific to certain situations. In six experimental studies,...

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van Doorn J, Zeelenberg M, Breugelmans SM. An exploration of third parties' preference for compensation over punishment: six experimental demonstrations. Theory Decis. 2018;85(3):333-351doi: 10.1007/s11238-018-9665-9.
van Doorn, J., Zeelenberg, M., & Breugelmans, S. M. (2018). An exploration of third parties' preference for compensation over punishment: six experimental demonstrations. Theory and decision, 85(3), 333-351. https://doi.org/10.1007/s11238-018-9665-9
van Doorn, Janne, et al. "An exploration of third parties' preference for compensation over punishment: six experimental demonstrations." Theory and decision vol. 85,3 (2018): 333-351. doi: https://doi.org/10.1007/s11238-018-9665-9
van Doorn J, Zeelenberg M, Breugelmans SM. An exploration of third parties' preference for compensation over punishment: six experimental demonstrations. Theory Decis. 2018;85(3):333-351. doi: 10.1007/s11238-018-9665-9. Epub 2018 May 14. PMID: 30956365; PMCID: PMC6413721.
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Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence.

Physical review. E

Zierenberg J, Wilting J, Priesemann V, Levina A.
PMID: 32168601
Phys Rev E. 2020 Feb;101(2):022301. doi: 10.1103/PhysRevE.101.022301.

Spreading processes are conventionally monitored on a macroscopic level by counting the number of incidences over time. The spreading process can then be modeled either on the microscopic level, assuming an underlying interaction network, or directly on the macroscopic...

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Zierenberg J, Wilting J, Priesemann V, et al. Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence. Phys Rev E. 2020;101(2):022301doi: 10.1103/PhysRevE.101.022301.
Zierenberg, J., Wilting, J., Priesemann, V., & Levina, A. (2020). Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence. Physical review. E, 101(2), 022301. https://doi.org/10.1103/PhysRevE.101.022301
Zierenberg, Johannes, et al. "Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence." Physical review. E vol. 101,2 (2020): 022301. doi: https://doi.org/10.1103/PhysRevE.101.022301
Zierenberg J, Wilting J, Priesemann V, Levina A. Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence. Phys Rev E. 2020 Feb;101(2):022301. doi: 10.1103/PhysRevE.101.022301. PMID: 32168601.
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REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.

Nature methods

Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A.
PMID: 34021280
Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8.

No abstract available.

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Sarkans U, Chiu W, Collinson L, et al. REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. Nat Methods. 2021;18(12):1418-1422doi: 10.1038/s41592-021-01166-8.
Sarkans, U., Chiu, W., Collinson, L., Darrow, M. C., Ellenberg, J., Grunwald, D., Hériché, J. K., Iudin, A., Martins, G. G., Meehan, T., Narayan, K., Patwardhan, A., Russell, M. R. G., Saibil, H. R., Strambio-De-Castillia, C., Swedlow, J. R., Tischer, C., Uhlmann, V., Verkade, P., Barlow, M., Bayraktar, O., Birney, E., Catavitello, C., Cawthorne, C., Wagner-Conrad, S., Duke, E., Paul-Gilloteaux, P., Gustin, E., Harkiolaki, M., Kankaanpää, P., Lemberger, T., McEntyre, J., Moore, J., Nicholls, A. W., Onami, S., Parkinson, H., Parsons, M., Romanchikova, M., Sofroniew, N., Swoger, J., Utz, N., Voortman, L. M., Wong, F., Zhang, P., Kleywegt, G. J., & Brazma, A. (2021). REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. Nature methods, 18(12), 1418-1422. https://doi.org/10.1038/s41592-021-01166-8
Sarkans, Ugis, et al. "REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology." Nature methods vol. 18,12 (2021): 1418-1422. doi: https://doi.org/10.1038/s41592-021-01166-8
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A. REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8. PMID: 34021280; PMCID: PMC8606015.
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Encapsulation of the psyllid-pathogenic fungus Pandora sp. nov. inedit. and experimental infection of target insects.

Pest management science

Muskat LC, Görg LM, Humbert P, Gross J, Eilenberg J, Patel AV.
PMID: 34783145
Pest Manag Sci. 2021 Nov 15; doi: 10.1002/ps.6710. Epub 2021 Nov 15.

BACKGROUND: Pandora sp. nov. inedit. (Entomophthorales: Entomophthoraceae) (ARSEF 13372) is a recently isolated entomophthoralean fungus with potential for psyllid pest control. This study aimed to develop a formulation based on biocompatible hydrogel beads in order to transfer the fungus...

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Muskat LC, Görg LM, Humbert P, et al. Encapsulation of the psyllid-pathogenic fungus Pandora sp. nov. inedit. and experimental infection of target insects. Pest Manag Sci. 2021;doi: 10.1002/ps.6710.
Muskat, L. C., Görg, L. M., Humbert, P., Gross, J., Eilenberg, J., & Patel, A. V. (2021). Encapsulation of the psyllid-pathogenic fungus Pandora sp. nov. inedit. and experimental infection of target insects. Pest management science, . https://doi.org/10.1002/ps.6710
Muskat, Linda C, et al. "Encapsulation of the psyllid-pathogenic fungus Pandora sp. nov. inedit. and experimental infection of target insects." Pest management science vol. (2021). doi: https://doi.org/10.1002/ps.6710
Muskat LC, Görg LM, Humbert P, Gross J, Eilenberg J, Patel AV. Encapsulation of the psyllid-pathogenic fungus Pandora sp. nov. inedit. and experimental infection of target insects. Pest Manag Sci. 2021 Nov 15; doi: 10.1002/ps.6710. Epub 2021 Nov 15. PMID: 34783145.
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Effect of manganese, zinc, and copper on the biological and osteogenic properties of mesoporous bioactive glass nanoparticles.

Journal of biomedical materials research. Part A

Westhauser F, Wilkesmann S, Nawaz Q, Hohenbild F, Rehder F, Saur M, Fellenberg J, Moghaddam A, Ali MS, Peukert W, Boccaccini AR.
PMID: 33289275
J Biomed Mater Res A. 2021 Aug;109(8):1457-1467. doi: 10.1002/jbm.a.37136. Epub 2020 Dec 20.

Mesoporous bioactive glass nanoparticles (MBGNs) have demonstrated promising properties for the local delivery of therapeutically active ions with the aim to improve their osteogenic properties. Manganese (Mn), zinc (Zn), and copper (Cu) ions have already shown promising pro-osteogenic properties....

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Westhauser F, Wilkesmann S, Nawaz Q, et al. Effect of manganese, zinc, and copper on the biological and osteogenic properties of mesoporous bioactive glass nanoparticles. J Biomed Mater Res A. 2020;109(8):1457-1467doi: 10.1002/jbm.a.37136.
Westhauser, F., Wilkesmann, S., Nawaz, Q., Hohenbild, F., Rehder, F., Saur, M., Fellenberg, J., Moghaddam, A., Ali, M. S., Peukert, W., & Boccaccini, A. R. (2021). Effect of manganese, zinc, and copper on the biological and osteogenic properties of mesoporous bioactive glass nanoparticles. Journal of biomedical materials research. Part A, 109(8), 1457-1467. https://doi.org/10.1002/jbm.a.37136
Westhauser, Fabian, et al. "Effect of manganese, zinc, and copper on the biological and osteogenic properties of mesoporous bioactive glass nanoparticles." Journal of biomedical materials research. Part A vol. 109,8 (2021): 1457-1467. doi: https://doi.org/10.1002/jbm.a.37136
Westhauser F, Wilkesmann S, Nawaz Q, Hohenbild F, Rehder F, Saur M, Fellenberg J, Moghaddam A, Ali MS, Peukert W, Boccaccini AR. Effect of manganese, zinc, and copper on the biological and osteogenic properties of mesoporous bioactive glass nanoparticles. J Biomed Mater Res A. 2021 Aug;109(8):1457-1467. doi: 10.1002/jbm.a.37136. Epub 2020 Dec 20. PMID: 33289275.
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What we talk about when we talk about hope: A prototype analysis.

Emotion (Washington, D.C.)

Luo SX, van Horen F, Millet K, Zeelenberg M.
PMID: 32614195
Emotion. 2020 Jul 02; doi: 10.1037/emo0000821. Epub 2020 Jul 02.

Although hope is a well-studied topic, there is no consensus on its definition. Using a prototype analysis (a bottom-up approach collecting laypeople's views on hope), the present research defines hope and provides insights into its associations with other related...

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Luo SX, van Horen F, Millet K, et al. What we talk about when we talk about hope: A prototype analysis. Emotion. 2020;doi: 10.1037/emo0000821.
Luo, S. X., van Horen, F., Millet, K., & Zeelenberg, M. (2020). What we talk about when we talk about hope: A prototype analysis. Emotion (Washington, D.C.), . https://doi.org/10.1037/emo0000821
Luo, Siria Xiyueyao, et al. "What we talk about when we talk about hope: A prototype analysis." Emotion (Washington, D.C.) vol. (2020). doi: https://doi.org/10.1037/emo0000821
Luo SX, van Horen F, Millet K, Zeelenberg M. What we talk about when we talk about hope: A prototype analysis. Emotion. 2020 Jul 02; doi: 10.1037/emo0000821. Epub 2020 Jul 02. PMID: 32614195.
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