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Attenuation of the Hepatoprotective Effects of Ileal Apical Sodium Dependent Bile Acid Transporter (ASBT) Inhibition in Choline-Deficient L-Amino Acid-Defined (CDAA) Diet-Fed Mice.

Frontiers in medicine

Rao A, van de Peppel IP, Gumber S, Karpen SJ, Dawson PA.
PMID: 32158763
Front Med (Lausanne). 2020 Feb 25;7:60. doi: 10.3389/fmed.2020.00060. eCollection 2020.

Non-alcoholic fatty liver disease (NAFLD) is a major growing worldwide health problem. We previously reported that interruption of the enterohepatic circulation of bile acids using a non-absorbable apical sodium-dependent bile acid transporter inhibitor (ASBTi; SC-435) reduced the development of...

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Rao A, van de Peppel IP, Gumber S, et al. Attenuation of the Hepatoprotective Effects of Ileal Apical Sodium Dependent Bile Acid Transporter (ASBT) Inhibition in Choline-Deficient L-Amino Acid-Defined (CDAA) Diet-Fed Mice. Front Med (Lausanne). 2020;7:60doi: 10.3389/fmed.2020.00060.
Rao, A., van de Peppel, I. P., Gumber, S., Karpen, S. J., & Dawson, P. A. (2020). Attenuation of the Hepatoprotective Effects of Ileal Apical Sodium Dependent Bile Acid Transporter (ASBT) Inhibition in Choline-Deficient L-Amino Acid-Defined (CDAA) Diet-Fed Mice. Frontiers in medicine, 760. https://doi.org/10.3389/fmed.2020.00060
Rao, Anuradha, et al. "Attenuation of the Hepatoprotective Effects of Ileal Apical Sodium Dependent Bile Acid Transporter (ASBT) Inhibition in Choline-Deficient L-Amino Acid-Defined (CDAA) Diet-Fed Mice." Frontiers in medicine vol. 7 (2020): 60. doi: https://doi.org/10.3389/fmed.2020.00060
Rao A, van de Peppel IP, Gumber S, Karpen SJ, Dawson PA. Attenuation of the Hepatoprotective Effects of Ileal Apical Sodium Dependent Bile Acid Transporter (ASBT) Inhibition in Choline-Deficient L-Amino Acid-Defined (CDAA) Diet-Fed Mice. Front Med (Lausanne). 2020 Feb 25;7:60. doi: 10.3389/fmed.2020.00060. eCollection 2020. PMID: 32158763; PMCID: PMC7052288.
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Ice needles weave patterns of stones in freezing landscapes.

Proceedings of the National Academy of Sciences of the United States of America

Li A, Matsuoka N, Niu F, Chen J, Ge Z, Hu W, Li D, Hallet B, van de Koppel J, Goldenfeld N, Liu QX.
PMID: 34593647
Proc Natl Acad Sci U S A. 2021 Oct 05;118(40). doi: 10.1073/pnas.2110670118. Epub 2021 Sep 30.

Patterned ground, defined by the segregation of stones in soil according to size, is one of the most strikingly self-organized characteristics of polar and high-alpine landscapes. The presence of such patterns on Mars has been proposed as evidence for...

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Li A, Matsuoka N, Niu F, et al. Ice needles weave patterns of stones in freezing landscapes. Proc Natl Acad Sci U S A. 2021;118(40)doi: 10.1073/pnas.2110670118.
Li, A., Matsuoka, N., Niu, F., Chen, J., Ge, Z., Hu, W., Li, D., Hallet, B., van de Koppel, J., Goldenfeld, N., & Liu, Q. X. (2021). Ice needles weave patterns of stones in freezing landscapes. Proceedings of the National Academy of Sciences of the United States of America, 118(40), . https://doi.org/10.1073/pnas.2110670118
Li, Anyuan, et al. "Ice needles weave patterns of stones in freezing landscapes." Proceedings of the National Academy of Sciences of the United States of America vol. 118,40 (2021). doi: https://doi.org/10.1073/pnas.2110670118
Li A, Matsuoka N, Niu F, Chen J, Ge Z, Hu W, Li D, Hallet B, van de Koppel J, Goldenfeld N, Liu QX. Ice needles weave patterns of stones in freezing landscapes. Proc Natl Acad Sci U S A. 2021 Oct 05;118(40). doi: 10.1073/pnas.2110670118. Epub 2021 Sep 30. PMID: 34593647; PMCID: PMC8501760.
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Ice needles weave patterns of stones in freezing landscapes.

Proceedings of the National Academy of Sciences of the United States of America

Li A, Matsuoka N, Niu F, Chen J, Ge Z, Hu W, Li D, Hallet B, van de Koppel J, Goldenfeld N, Liu QX.
PMID: 34593647
Proc Natl Acad Sci U S A. 2021 Oct 05;118(40). doi: 10.1073/pnas.2110670118. Epub 2021 Sep 30.

Patterned ground, defined by the segregation of stones in soil according to size, is one of the most strikingly self-organized characteristics of polar and high-alpine landscapes. The presence of such patterns on Mars has been proposed as evidence for...

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Li A, Matsuoka N, Niu F, et al. Ice needles weave patterns of stones in freezing landscapes. Proc Natl Acad Sci U S A. 2021;118(40)doi: 10.1073/pnas.2110670118.
Li, A., Matsuoka, N., Niu, F., Chen, J., Ge, Z., Hu, W., Li, D., Hallet, B., van de Koppel, J., Goldenfeld, N., & Liu, Q. X. (2021). Ice needles weave patterns of stones in freezing landscapes. Proceedings of the National Academy of Sciences of the United States of America, 118(40), . https://doi.org/10.1073/pnas.2110670118
Li, Anyuan, et al. "Ice needles weave patterns of stones in freezing landscapes." Proceedings of the National Academy of Sciences of the United States of America vol. 118,40 (2021). doi: https://doi.org/10.1073/pnas.2110670118
Li A, Matsuoka N, Niu F, Chen J, Ge Z, Hu W, Li D, Hallet B, van de Koppel J, Goldenfeld N, Liu QX. Ice needles weave patterns of stones in freezing landscapes. Proc Natl Acad Sci U S A. 2021 Oct 05;118(40). doi: 10.1073/pnas.2110670118. Epub 2021 Sep 30. PMID: 34593647; PMCID: PMC8501760.
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The Beneficial Effects of Apical Sodium-Dependent Bile Acid Transporter Inactivation Depend on Dietary Fat Composition.

Molecular nutrition & food research

van de Peppel IP, Rao A, Dommerholt MB, Bongiovanni L, Thomas R, de Bruin A, Karpen SJ, Dawson PA, Verkade HJ, Jonker JW.
PMID: 33079450
Mol Nutr Food Res. 2020 Oct 20;e2000750. doi: 10.1002/mnfr.202000750. Epub 2020 Oct 20.

SCOPE: The apical sodium-dependent bile acid transporter (ASBT, SLC10A2) is important in the enterohepatic cycling of bile acids and thereby in the intestinal absorption of lipids. ASBT inhibition has been shown to improve aspects of the metabolic syndrome, but...

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van de Peppel IP, Rao A, Dommerholt MB, et al. The Beneficial Effects of Apical Sodium-Dependent Bile Acid Transporter Inactivation Depend on Dietary Fat Composition. Mol Nutr Food Res. 2020;e2000750doi: 10.1002/mnfr.202000750.
van de Peppel, I. P., Rao, A., Dommerholt, M. B., Bongiovanni, L., Thomas, R., de Bruin, A., Karpen, S. J., Dawson, P. A., Verkade, H. J., & Jonker, J. W. (2020). The Beneficial Effects of Apical Sodium-Dependent Bile Acid Transporter Inactivation Depend on Dietary Fat Composition. Molecular nutrition & food research, e2000750. https://doi.org/10.1002/mnfr.202000750
van de Peppel, Ivo P, et al. "The Beneficial Effects of Apical Sodium-Dependent Bile Acid Transporter Inactivation Depend on Dietary Fat Composition." Molecular nutrition & food research vol. (2020): e2000750. doi: https://doi.org/10.1002/mnfr.202000750
van de Peppel IP, Rao A, Dommerholt MB, Bongiovanni L, Thomas R, de Bruin A, Karpen SJ, Dawson PA, Verkade HJ, Jonker JW. The Beneficial Effects of Apical Sodium-Dependent Bile Acid Transporter Inactivation Depend on Dietary Fat Composition. Mol Nutr Food Res. 2020 Oct 20;e2000750. doi: 10.1002/mnfr.202000750. Epub 2020 Oct 20. PMID: 33079450; PMCID: PMC7757219.
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Self-organization of river vegetation leads to emergent buffering of river flows and water levels.

Proceedings. Biological sciences

Cornacchia L, Wharton G, Davies G, Grabowski RC, Temmerman S, van der Wal D, Bouma TJ, van de Koppel J.
PMID: 32673561
Proc Biol Sci. 2020 Jul 29;287(1931):20201147. doi: 10.1098/rspb.2020.1147. Epub 2020 Jul 15.

Global climate change is expected to impact hydrodynamic conditions in stream ecosystems. There is limited understanding of how stream ecosystems interact and possibly adapt to novel hydrodynamic conditions. Combining mathematical modelling with field data, we demonstrate that bio-physical feedback...

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Cornacchia L, Wharton G, Davies G, et al. Self-organization of river vegetation leads to emergent buffering of river flows and water levels. Proc Biol Sci. 2020;287(1931):20201147doi: 10.1098/rspb.2020.1147.
Cornacchia, L., Wharton, G., Davies, G., Grabowski, R. C., Temmerman, S., van der Wal, D., Bouma, T. J., & van de Koppel, J. (2020). Self-organization of river vegetation leads to emergent buffering of river flows and water levels. Proceedings. Biological sciences, 287(1931), 20201147. https://doi.org/10.1098/rspb.2020.1147
Cornacchia, Loreta, et al. "Self-organization of river vegetation leads to emergent buffering of river flows and water levels." Proceedings. Biological sciences vol. 287,1931 (2020): 20201147. doi: https://doi.org/10.1098/rspb.2020.1147
Cornacchia L, Wharton G, Davies G, Grabowski RC, Temmerman S, van der Wal D, Bouma TJ, van de Koppel J. Self-organization of river vegetation leads to emergent buffering of river flows and water levels. Proc Biol Sci. 2020 Jul 29;287(1931):20201147. doi: 10.1098/rspb.2020.1147. Epub 2020 Jul 15. PMID: 32673561; PMCID: PMC7423680.
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Spatial heterogeneity and irreversible vegetation change in semiarid grazing systems.

The American naturalist

van de Koppel J, Rietkerk M, van Langevelde F, Kumar L, Klausmeier CA, Fryxell JM, Hearne JW, van Andel J, de Ridder N, Skidmore A, Stroosnijder L, Prins HH.
PMID: 18707414
Am Nat. 2002 Feb;159(2):209-18. doi: 10.1086/324791.

Recent theoretical studies have shown that spatial redistribution of surface water may explain the occurrence of patterns of alternating vegetated and degraded patches in semiarid grasslands. These results implied, however, that spatial redistribution processes cannot explain the collapse of...

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van de Koppel J, Rietkerk M, van Langevelde F, et al. Spatial heterogeneity and irreversible vegetation change in semiarid grazing systems. Am Nat. 2002;159(2):209-18doi: 10.1086/324791.
van de Koppel, J., Rietkerk, M., van Langevelde, F., Kumar, L., Klausmeier, C. A., Fryxell, J. M., Hearne, J. W., van Andel, J., de Ridder, N., Skidmore, A., Stroosnijder, L., & Prins, H. H. (2002). Spatial heterogeneity and irreversible vegetation change in semiarid grazing systems. The American naturalist, 159(2), 209-18. https://doi.org/10.1086/324791
van de Koppel, Johan, et al. "Spatial heterogeneity and irreversible vegetation change in semiarid grazing systems." The American naturalist vol. 159,2 (2002): 209-18. doi: https://doi.org/10.1086/324791
van de Koppel J, Rietkerk M, van Langevelde F, Kumar L, Klausmeier CA, Fryxell JM, Hearne JW, van Andel J, de Ridder N, Skidmore A, Stroosnijder L, Prins HH. Spatial heterogeneity and irreversible vegetation change in semiarid grazing systems. Am Nat. 2002 Feb;159(2):209-18. doi: 10.1086/324791. PMID: 18707414.
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Evasion of tipping in complex systems through spatial pattern formation.

Science (New York, N.Y.)

Rietkerk M, Bastiaansen R, Banerjee S, van de Koppel J, Baudena M, Doelman A.
PMID: 34618584
Science. 2021 Oct 08;374(6564):eabj0359. doi: 10.1126/science.abj0359. Epub 2021 Oct 08.

[Figure: see text].

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Rietkerk M, Bastiaansen R, Banerjee S, et al. Evasion of tipping in complex systems through spatial pattern formation. Science. 2021;374(6564):eabj0359doi: 10.1126/science.abj0359.
Rietkerk, M., Bastiaansen, R., Banerjee, S., van de Koppel, J., Baudena, M., & Doelman, A. (2021). Evasion of tipping in complex systems through spatial pattern formation. Science (New York, N.Y.), 374(6564), eabj0359. https://doi.org/10.1126/science.abj0359
Rietkerk, Max, et al. "Evasion of tipping in complex systems through spatial pattern formation." Science (New York, N.Y.) vol. 374,6564 (2021): eabj0359. doi: https://doi.org/10.1126/science.abj0359
Rietkerk M, Bastiaansen R, Banerjee S, van de Koppel J, Baudena M, Doelman A. Evasion of tipping in complex systems through spatial pattern formation. Science. 2021 Oct 08;374(6564):eabj0359. doi: 10.1126/science.abj0359. Epub 2021 Oct 08. PMID: 34618584.
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Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote .

Frontiers in bioengineering and biotechnology

Ghebes CA, Morhayim J, Kleijer M, Koroglu M, Erkeland SJ, Hoogenboezem R, Bindels E, van Alphen FPJ, van den Biggelaar M, Nolte MA, van der Eerden BCJ, Braakman E, Voermans C, van de Peppel J.
PMID: 33718342
Front Bioeng Biotechnol. 2021 Feb 25;9:640419. doi: 10.3389/fbioe.2021.640419. eCollection 2021.

Recently, we and others have illustrated that extracellular vesicles (EVs) have the potential to support hematopoietic stem and progenitor cell (HSPC) expansion; however, the mechanism and processes responsible for the intercellular communication by EVs are still unknown. In the...

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Ghebes CA, Morhayim J, Kleijer M, et al. Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote . Front Bioeng Biotechnol. 2021;9:640419doi: 10.3389/fbioe.2021.640419.
Ghebes, C. A., Morhayim, J., Kleijer, M., Koroglu, M., Erkeland, S. J., Hoogenboezem, R., Bindels, E., van Alphen, F. P. J., van den Biggelaar, M., Nolte, M. A., van der Eerden, B. C. J., Braakman, E., Voermans, C., & van de Peppel, J. (2021). Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote . Frontiers in bioengineering and biotechnology, 9640419. https://doi.org/10.3389/fbioe.2021.640419
Ghebes, Corina A, et al. "Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote ." Frontiers in bioengineering and biotechnology vol. 9 (2021): 640419. doi: https://doi.org/10.3389/fbioe.2021.640419
Ghebes CA, Morhayim J, Kleijer M, Koroglu M, Erkeland SJ, Hoogenboezem R, Bindels E, van Alphen FPJ, van den Biggelaar M, Nolte MA, van der Eerden BCJ, Braakman E, Voermans C, van de Peppel J. Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote . Front Bioeng Biotechnol. 2021 Feb 25;9:640419. doi: 10.3389/fbioe.2021.640419. eCollection 2021. PMID: 33718342; PMCID: PMC7947881.
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A Comparison of the "Reduced Losses" and "Increased Production" Models for Mussel Bed Dynamics.

Bulletin of mathematical biology

Sherratt JA, Liu QX, van de Koppel J.
PMID: 34427781
Bull Math Biol. 2021 Aug 24;83(10):99. doi: 10.1007/s11538-021-00932-1.

Self-organised regular pattern formation is one of the foremost examples of the development of complexity in ecosystems. Despite the wide array of mechanistic models that have been proposed to understand pattern formation, there is limited general understanding of the...

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Sherratt JA, Liu QX, van de Koppel J. A Comparison of the "Reduced Losses" and "Increased Production" Models for Mussel Bed Dynamics. Bull Math Biol. 2021;83(10):99doi: 10.1007/s11538-021-00932-1.
Sherratt, J. A., Liu, Q. X., & van de Koppel, J. (2021). A Comparison of the "Reduced Losses" and "Increased Production" Models for Mussel Bed Dynamics. Bulletin of mathematical biology, 83(10), 99. https://doi.org/10.1007/s11538-021-00932-1
Sherratt, Jonathan A, et al. "A Comparison of the "Reduced Losses" and "Increased Production" Models for Mussel Bed Dynamics." Bulletin of mathematical biology vol. 83,10 (2021): 99. doi: https://doi.org/10.1007/s11538-021-00932-1
Sherratt JA, Liu QX, van de Koppel J. A Comparison of the "Reduced Losses" and "Increased Production" Models for Mussel Bed Dynamics. Bull Math Biol. 2021 Aug 24;83(10):99. doi: 10.1007/s11538-021-00932-1. PMID: 34427781; PMCID: PMC8384834.
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An invasive species erodes the performance of coastal wetland protected areas.

Science advances

Ren J, Chen J, Xu C, van de Koppel J, Thomsen MS, Qiu S, Cheng F, Song W, Liu QX, Xu C, Bai J, Zhang Y, Cui B, Bertness MD, Silliman BR, Li B, He Q.
PMID: 34644105
Sci Adv. 2021 Oct 15;7(42):eabi8943. doi: 10.1126/sciadv.abi8943. Epub 2021 Oct 13.

[Figure: see text].

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Ren J, Chen J, Xu C, et al. An invasive species erodes the performance of coastal wetland protected areas. Sci Adv. 2021;7(42):eabi8943doi: 10.1126/sciadv.abi8943.
Ren, J., Chen, J., Xu, C., van de Koppel, J., Thomsen, M. S., Qiu, S., Cheng, F., Song, W., Liu, Q. X., Xu, C., Bai, J., Zhang, Y., Cui, B., Bertness, M. D., Silliman, B. R., Li, B., & He, Q. (2021). An invasive species erodes the performance of coastal wetland protected areas. Science advances, 7(42), eabi8943. https://doi.org/10.1126/sciadv.abi8943
Ren, Junlin, et al. "An invasive species erodes the performance of coastal wetland protected areas." Science advances vol. 7,42 (2021): eabi8943. doi: https://doi.org/10.1126/sciadv.abi8943
Ren J, Chen J, Xu C, van de Koppel J, Thomsen MS, Qiu S, Cheng F, Song W, Liu QX, Xu C, Bai J, Zhang Y, Cui B, Bertness MD, Silliman BR, Li B, He Q. An invasive species erodes the performance of coastal wetland protected areas. Sci Adv. 2021 Oct 15;7(42):eabi8943. doi: 10.1126/sciadv.abi8943. Epub 2021 Oct 13. PMID: 34644105; PMCID: PMC8514088.
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Cell Surface Glycoprotein CD24 Marks Bone Marrow-Derived Human Mesenchymal Stem/Stromal Cells with Reduced Proliferative and Differentiation Capacity In Vitro.

Stem cells and development

van de Peppel J, Schaaf GJ, Matos AA, Guo Y, Strini T, Verschoor W, Dudakovic A, van Wijnen AJ, van Leeuwen JPTM.
PMID: 33593128
Stem Cells Dev. 2021 Mar;30(6):325-336. doi: 10.1089/scd.2021.0027.

Bone marrow-derived mesenchymal stem/stromal cells (BMSCs) are fundamental to bone regenerative therapies, tissue engineering, and postmenopausal osteoporosis. Donor variation among patients, cell heterogeneity, and unpredictable capacity for differentiation reduce effectiveness of BMSCs for regenerative cell therapies. The cell surface...

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van de Peppel J, Schaaf GJ, Matos AA, et al. Cell Surface Glycoprotein CD24 Marks Bone Marrow-Derived Human Mesenchymal Stem/Stromal Cells with Reduced Proliferative and Differentiation Capacity In Vitro. Stem Cells Dev. 2021;30(6):325-336doi: 10.1089/scd.2021.0027.
van de Peppel, J., Schaaf, G. J., Matos, A. A., Guo, Y., Strini, T., Verschoor, W., Dudakovic, A., van Wijnen, A. J., & van Leeuwen, J. P. T. M. (2021). Cell Surface Glycoprotein CD24 Marks Bone Marrow-Derived Human Mesenchymal Stem/Stromal Cells with Reduced Proliferative and Differentiation Capacity In Vitro. Stem cells and development, 30(6), 325-336. https://doi.org/10.1089/scd.2021.0027
van de Peppel, Jeroen, et al. "Cell Surface Glycoprotein CD24 Marks Bone Marrow-Derived Human Mesenchymal Stem/Stromal Cells with Reduced Proliferative and Differentiation Capacity In Vitro." Stem cells and development vol. 30,6 (2021): 325-336. doi: https://doi.org/10.1089/scd.2021.0027
van de Peppel J, Schaaf GJ, Matos AA, Guo Y, Strini T, Verschoor W, Dudakovic A, van Wijnen AJ, van Leeuwen JPTM. Cell Surface Glycoprotein CD24 Marks Bone Marrow-Derived Human Mesenchymal Stem/Stromal Cells with Reduced Proliferative and Differentiation Capacity In Vitro. Stem Cells Dev. 2021 Mar;30(6):325-336. doi: 10.1089/scd.2021.0027. PMID: 33593128; PMCID: PMC7984936.
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Implementation of a clinical decision rule for selecting empiric treatment for invasive aspergillosis in a setting with high triazole resistance.

Medical mycology

van de Peppel RJ, van Grootveld R, Hendriks BJC, van Paassen J, Bernards S, Jolink H, Koopmans JG, von dem Borne PA, van der Beek MT, de Boer MGJ.
PMID: 34878121
Med Mycol. 2021 Dec 08;60(1). doi: 10.1093/mmy/myab060.

World-wide, emerging triazole resistance increasingly complicates treatment of invasive aspergillosis (IA). In settings with substantial (>10%) prevalence of triazole resistance, empiric combination therapy with both a triazole and liposomal amphotericin B (LAmB) can be considered because of the low...

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van de Peppel RJ, van Grootveld R, Hendriks BJC, et al. Implementation of a clinical decision rule for selecting empiric treatment for invasive aspergillosis in a setting with high triazole resistance. Med Mycol. 2021;60(1)doi: 10.1093/mmy/myab060.
van de Peppel, R. J., van Grootveld, R., Hendriks, B. J. C., van Paassen, J., Bernards, S., Jolink, H., Koopmans, J. G., von dem Borne, P. A., van der Beek, M. T., & de Boer, M. G. J. (2021). Implementation of a clinical decision rule for selecting empiric treatment for invasive aspergillosis in a setting with high triazole resistance. Medical mycology, 60(1), . https://doi.org/10.1093/mmy/myab060
van de Peppel, Robert J, et al. "Implementation of a clinical decision rule for selecting empiric treatment for invasive aspergillosis in a setting with high triazole resistance." Medical mycology vol. 60,1 (2021). doi: https://doi.org/10.1093/mmy/myab060
van de Peppel RJ, van Grootveld R, Hendriks BJC, van Paassen J, Bernards S, Jolink H, Koopmans JG, von dem Borne PA, van der Beek MT, de Boer MGJ. Implementation of a clinical decision rule for selecting empiric treatment for invasive aspergillosis in a setting with high triazole resistance. Med Mycol. 2021 Dec 08;60(1). doi: 10.1093/mmy/myab060. PMID: 34878121; PMCID: PMC8653343.
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