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Escherichia coli K‐12 genes essential for the synthesis of c‐type cytochromes and a third nitrate reductase located in the periplasm

k-12

Grove J, Tanapongpipat S, Thomas G.
GSID: Cim9NzL9EM8J
J Grove, S Tanapongpipat, G Thomas… - Molecular …, 1996 - Wiley Online Library

… coli K-12 strain vectors used are listed in Table 5: plasmids constructed for this work are listed in Table 6. The … (1993a) Identification of the formate dehydrogenases and genetic determinants of formate-dependent nitrite reduction by Escherichia coli...

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Grove, J., Tanapongpipat, S., Thomas, G., Griffiths, L., Crooke, H., & Cole, J. (1996). Escherichia coli K‐12 genes essential for the synthesis of c‐type cytochromes and a third nitrate reductase located in the periplasm. Molecular microbiology, 19(3), 467-481.
Grove, J., et al. "Escherichia coli K‐12 genes essential for the synthesis of c‐type cytochromes and a third nitrate reductase located in the periplasm." Molecular microbiology 19.3 (1996): 467-481.
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Membrane Associated Progesterone Receptors: Promiscuous Proteins with Pleiotropic Functions - Focus on Interactions with Cytochromes P450.

Frontiers in pharmacology

Ryu CS, Klein K, Zanger UM.
PMID: 28396637
Front Pharmacol. 2017 Mar 27;8:159. doi: 10.3389/fphar.2017.00159. eCollection 2017.

Membrane-associated progesterone receptors (MAPR) are a group of four rather small, partially homologous proteins, which share a similar non-covalent heme-binding domain that is related to cytochrome b5, a well-known functional interaction partner of microsomal cytochrome P450 (CYP) monooxygenase systems....

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Ryu CS, Klein K, Zanger UM. Membrane Associated Progesterone Receptors: Promiscuous Proteins with Pleiotropic Functions - Focus on Interactions with Cytochromes P450. Front Pharmacol. 2017;8:159doi: 10.3389/fphar.2017.00159.
Ryu, C. S., Klein, K., & Zanger, U. M. (2017). Membrane Associated Progesterone Receptors: Promiscuous Proteins with Pleiotropic Functions - Focus on Interactions with Cytochromes P450. Frontiers in pharmacology, 8159. https://doi.org/10.3389/fphar.2017.00159
Ryu, Chang S, et al. "Membrane Associated Progesterone Receptors: Promiscuous Proteins with Pleiotropic Functions - Focus on Interactions with Cytochromes P450." Frontiers in pharmacology vol. 8 (2017): 159. doi: https://doi.org/10.3389/fphar.2017.00159
Ryu CS, Klein K, Zanger UM. Membrane Associated Progesterone Receptors: Promiscuous Proteins with Pleiotropic Functions - Focus on Interactions with Cytochromes P450. Front Pharmacol. 2017 Mar 27;8:159. doi: 10.3389/fphar.2017.00159. eCollection 2017. PMID: 28396637; PMCID: PMC5366339.
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Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T.

Genome announcements

Lusk BG, Badalamenti JP, Parameswaran P, Bond DR, Torres CI.
PMID: 26404602
Genome Announc. 2015 Sep 24;3(5). doi: 10.1128/genomeA.01072-15.

A 3.19-Mbp draft genome of the Gram-positive thermophilic iron-reducing Firmicutes isolate from the Peptococcaceae family, Thermincola ferriacetica Z-0001, was assembled at ~100× coverage from 100-bp paired-end Illumina reads. The draft genome contains 3,274 predicted genes (3,187 protein coding genes)...

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Lusk BG, Badalamenti JP, Parameswaran P, et al. Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T. Genome Announc. 2015;3(5)doi: 10.1128/genomeA.01072-15.
Lusk, B. G., Badalamenti, J. P., Parameswaran, P., Bond, D. R., & Torres, C. I. (2015). Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T. Genome announcements, 3(5), . https://doi.org/10.1128/genomeA.01072-15
Lusk, Bradley G, et al. "Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T." Genome announcements vol. 3,5 (2015). doi: https://doi.org/10.1128/genomeA.01072-15
Lusk BG, Badalamenti JP, Parameswaran P, Bond DR, Torres CI. Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T. Genome Announc. 2015 Sep 24;3(5). doi: 10.1128/genomeA.01072-15. PMID: 26404602; PMCID: PMC4582578.
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Ruffling in a Series of Nickel(II) meso-Tetrasubstituted Porphyrins as a Model for the Conserved Ruffling of the Heme of Cytochromes c.

Journal of the American Chemical Society

Jentzen W, Simpson MC, Hobbs JD, Song X, Ema T, Nelson NY, Medforth CJ, Smith KM, Veyrat M, Mazzanti M, Ramasseul R, Marchon JC, Takeuchi T, Goddard WA, Shelnutt JA.
PMID: 27275517
J Am Chem Soc. 1995 Nov 01;117(45):11085-97. doi: 10.1021/ja00150a008.

No abstract available.

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Jentzen W, Simpson MC, Hobbs JD, et al. Ruffling in a Series of Nickel(II) meso-Tetrasubstituted Porphyrins as a Model for the Conserved Ruffling of the Heme of Cytochromes c. J Am Chem Soc. 1995;117(45):11085-97doi: 10.1021/ja00150a008.
Jentzen, W., Simpson, M. C., Hobbs, J. D., Song, X., Ema, T., Nelson, N. Y., Medforth, C. J., Smith, K. M., Veyrat, M., Mazzanti, M., Ramasseul, R., Marchon, J. C., Takeuchi, T., Goddard, W. A., & Shelnutt, J. A. (1995). Ruffling in a Series of Nickel(II) meso-Tetrasubstituted Porphyrins as a Model for the Conserved Ruffling of the Heme of Cytochromes c. Journal of the American Chemical Society, 117(45), 11085-97. https://doi.org/10.1021/ja00150a008
Jentzen, W, et al. "Ruffling in a Series of Nickel(II) meso-Tetrasubstituted Porphyrins as a Model for the Conserved Ruffling of the Heme of Cytochromes c." Journal of the American Chemical Society vol. 117,45 (1995): 11085-97. doi: https://doi.org/10.1021/ja00150a008
Jentzen W, Simpson MC, Hobbs JD, Song X, Ema T, Nelson NY, Medforth CJ, Smith KM, Veyrat M, Mazzanti M, Ramasseul R, Marchon JC, Takeuchi T, Goddard WA, Shelnutt JA. Ruffling in a Series of Nickel(II) meso-Tetrasubstituted Porphyrins as a Model for the Conserved Ruffling of the Heme of Cytochromes c. J Am Chem Soc. 1995 Nov 01;117(45):11085-97. doi: 10.1021/ja00150a008. PMID: 27275517.
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Complete Genome of Geobacter pickeringii G13T, a Metal-Reducing Isolate from Sedimentary Kaolin Deposits.

Genome announcements

Badalamenti JP, Bond DR.
PMID: 25744992
Genome Announc. 2015 Mar 05;3(2). doi: 10.1128/genomeA.00038-15.

We used PacBio sequencing to assemble the genome of the pristine freshwater isolate Geobacter pickeringii G13(T) into a single 3,618,700-bp circular chromosome polished to 99.999% accuracy (quality value [QV], 50). This isolate shares several features with other Geobacter spp.,...

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Badalamenti JP, Bond DR. Complete Genome of Geobacter pickeringii G13T, a Metal-Reducing Isolate from Sedimentary Kaolin Deposits. Genome Announc. 2015;3(2)doi: 10.1128/genomeA.00038-15.
Badalamenti, J. P., & Bond, D. R. (2015). Complete Genome of Geobacter pickeringii G13T, a Metal-Reducing Isolate from Sedimentary Kaolin Deposits. Genome announcements, 3(2), . https://doi.org/10.1128/genomeA.00038-15
Badalamenti, Jonathan P, and Bond, Daniel R. "Complete Genome of Geobacter pickeringii G13T, a Metal-Reducing Isolate from Sedimentary Kaolin Deposits." Genome announcements vol. 3,2 (2015). doi: https://doi.org/10.1128/genomeA.00038-15
Badalamenti JP, Bond DR. Complete Genome of Geobacter pickeringii G13T, a Metal-Reducing Isolate from Sedimentary Kaolin Deposits. Genome Announc. 2015 Mar 05;3(2). doi: 10.1128/genomeA.00038-15. PMID: 25744992; PMCID: PMC4358379.
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The Small RNA RyhB Is a Regulator of Cytochrome Expression in .

Frontiers in microbiology

Meibom KL, Cabello EM, Bernier-Latmani R.
PMID: 29515549
Front Microbiol. 2018 Feb 21;9:268. doi: 10.3389/fmicb.2018.00268. eCollection 2018.

No abstract available.

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Meibom KL, Cabello EM, Bernier-Latmani R. The Small RNA RyhB Is a Regulator of Cytochrome Expression in . Front Microbiol. 2018;9:268doi: 10.3389/fmicb.2018.00268.
Meibom, K. L., Cabello, E. M., & Bernier-Latmani, R. (2018). The Small RNA RyhB Is a Regulator of Cytochrome Expression in . Frontiers in microbiology, 9268. https://doi.org/10.3389/fmicb.2018.00268
Meibom, Karin L, et al. "The Small RNA RyhB Is a Regulator of Cytochrome Expression in ." Frontiers in microbiology vol. 9 (2018): 268. doi: https://doi.org/10.3389/fmicb.2018.00268
Meibom KL, Cabello EM, Bernier-Latmani R. The Small RNA RyhB Is a Regulator of Cytochrome Expression in . Front Microbiol. 2018 Feb 21;9:268. doi: 10.3389/fmicb.2018.00268. eCollection 2018. PMID: 29515549; PMCID: PMC5826389.
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Evacetrapib: in vitro and clinical disposition, metabolism, excretion, and assessment of drug interaction potential with strong CYP3A and CYP2C8 inhibitors.

Pharmacology research & perspectives

Cannady EA, Wang MD, Friedrich S, Rehmel JL, Yi P, Small DS, Zhang W, Suico JG.
PMID: 26516590
Pharmacol Res Perspect. 2015 Oct;3(5):e00179. doi: 10.1002/prp2.179. Epub 2015 Oct 12.

Evacetrapib is an investigational cholesteryl ester transfer protein inhibitor (CETPi) for reduction of risk of major adverse cardiovascular events in patients with high-risk vascular disease. Understanding evacetrapib disposition, metabolism, and the potential for drug-drug interactions (DDI) may help guide...

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Cannady EA, Wang MD, Friedrich S, et al. Evacetrapib: in vitro and clinical disposition, metabolism, excretion, and assessment of drug interaction potential with strong CYP3A and CYP2C8 inhibitors. Pharmacol Res Perspect. 2015;3(5):e00179doi: 10.1002/prp2.179.
Cannady, E. A., Wang, M. D., Friedrich, S., Rehmel, J. L., Yi, P., Small, D. S., Zhang, W., & Suico, J. G. (2015). Evacetrapib: in vitro and clinical disposition, metabolism, excretion, and assessment of drug interaction potential with strong CYP3A and CYP2C8 inhibitors. Pharmacology research & perspectives, 3(5), e00179. https://doi.org/10.1002/prp2.179
Cannady, Ellen A, et al. "Evacetrapib: in vitro and clinical disposition, metabolism, excretion, and assessment of drug interaction potential with strong CYP3A and CYP2C8 inhibitors." Pharmacology research & perspectives vol. 3,5 (2015): e00179. doi: https://doi.org/10.1002/prp2.179
Cannady EA, Wang MD, Friedrich S, Rehmel JL, Yi P, Small DS, Zhang W, Suico JG. Evacetrapib: in vitro and clinical disposition, metabolism, excretion, and assessment of drug interaction potential with strong CYP3A and CYP2C8 inhibitors. Pharmacol Res Perspect. 2015 Oct;3(5):e00179. doi: 10.1002/prp2.179. Epub 2015 Oct 12. PMID: 26516590; PMCID: PMC4618649.
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The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer.

Environmental microbiology reports

Shi L, Richardson DJ, Wang Z, Kerisit SN, Rosso KM, Zachara JM, Fredrickson JK.
PMID: 23765850
Environ Microbiol Rep. 2009 Aug;1(4):220-7. doi: 10.1111/j.1758-2229.2009.00035.x. Epub 2009 Jun 12.

As key components of the electron transfer (ET) pathways used for dissimilatory reduction of solid iron [Fe(III)] (hydr)oxides, outer membrane multihaem c-type cytochromes MtrC and OmcA of Shewanella oneidensis MR-1 and OmcE and OmcS of Geobacter sulfurreducens mediate ET...

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Shi L, Richardson DJ, Wang Z, et al. The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer. Environ Microbiol Rep. 2009;1(4):220-7doi: 10.1111/j.1758-2229.2009.00035.x.
Shi, L., Richardson, D. J., Wang, Z., Kerisit, S. N., Rosso, K. M., Zachara, J. M., & Fredrickson, J. K. (2009). The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer. Environmental microbiology reports, 1(4), 220-7. https://doi.org/10.1111/j.1758-2229.2009.00035.x
Shi, Liang, et al. "The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer." Environmental microbiology reports vol. 1,4 (2009): 220-7. doi: https://doi.org/10.1111/j.1758-2229.2009.00035.x
Shi L, Richardson DJ, Wang Z, Kerisit SN, Rosso KM, Zachara JM, Fredrickson JK. The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer. Environ Microbiol Rep. 2009 Aug;1(4):220-7. doi: 10.1111/j.1758-2229.2009.00035.x. Epub 2009 Jun 12. PMID: 23765850.
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Dual serotonin and noradrenaline reuptake inhibitors: Focus on their differences.

International journal of psychiatry in clinical practice

Blier P.
PMID: 24921679
Int J Psychiatry Clin Pract. 2006;10:22-32. doi: 10.1080/13651500600645612.

There are three non-tricyclic dual serotonin (5-HT) and noradrenaline (NA) reuptake inhibitors (SNRIs) currently used in human therapeutics for psychiatric disorders. These medications differ in their in vitro potency to inhibit 5-HT and NA reuptake with differential ratios of...

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Blier P. Dual serotonin and noradrenaline reuptake inhibitors: Focus on their differences. Int J Psychiatry Clin Pract. 2006;10:22-32doi: 10.1080/13651500600645612.
Blier, P. (2006). Dual serotonin and noradrenaline reuptake inhibitors: Focus on their differences. International journal of psychiatry in clinical practice, 1022-32. https://doi.org/10.1080/13651500600645612
Blier, Pierre. "Dual serotonin and noradrenaline reuptake inhibitors: Focus on their differences." International journal of psychiatry in clinical practice vol. 10 (2006): 22-32. doi: https://doi.org/10.1080/13651500600645612
Blier P. Dual serotonin and noradrenaline reuptake inhibitors: Focus on their differences. Int J Psychiatry Clin Pract. 2006;10:22-32. doi: 10.1080/13651500600645612. PMID: 24921679.
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Kinetics of oxidation of the bound cytochromes in reaction centers from Rhodopseudomonas viridis.

Photosynthesis research

Shopes RJ, Levine LM, Holten D, Wraight CA.
PMID: 24435639
Photosynth Res. 1987 Jan;12(2):165-80. doi: 10.1007/BF00047946.

The initial oxidized species in the photochemical charge separation in reaction centers from Rps. viridis is the primary donor, P(+), a bacteriochlorophyll dimer. Bound c-type cytochromes, two high potential (Cyt c 558) and two low potential (Cyt c 553),...

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Shopes RJ, Levine LM, Holten D, et al. Kinetics of oxidation of the bound cytochromes in reaction centers from Rhodopseudomonas viridis. Photosynth Res. 1987;12(2):165-80doi: 10.1007/BF00047946.
Shopes, R. J., Levine, L. M., Holten, D., & Wraight, C. A. (1987). Kinetics of oxidation of the bound cytochromes in reaction centers from Rhodopseudomonas viridis. Photosynthesis research, 12(2), 165-80. https://doi.org/10.1007/BF00047946
Shopes, R J, et al. "Kinetics of oxidation of the bound cytochromes in reaction centers from Rhodopseudomonas viridis." Photosynthesis research vol. 12,2 (1987): 165-80. doi: https://doi.org/10.1007/BF00047946
Shopes RJ, Levine LM, Holten D, Wraight CA. Kinetics of oxidation of the bound cytochromes in reaction centers from Rhodopseudomonas viridis. Photosynth Res. 1987 Jan;12(2):165-80. doi: 10.1007/BF00047946. PMID: 24435639.
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Combination of 5-aminolevulinic acid and ferrous ion reduces plasma glucose and hemoglobin A1c levels in Zucker diabetic fatty rats.

FEBS open bio

Hara T, Koda A, Nozawa N, Ota U, Kondo H, Nakagawa H, Kamiya A, Miyashita K, Itoh H, Nakajima M, Tanaka T.
PMID: 27239432
FEBS Open Bio. 2016 Apr 29;6(6):515-28. doi: 10.1002/2211-5463.12048. eCollection 2016 Jun.

Mitochondrial dysfunction is associated with type 2 diabetes mellitus (T2DM). 5-Aminolevulinic acid (ALA), a natural amino acid produced only in the mitochondria, is a precursor of heme. Cytochromes that contain heme play an important role in aerobic energy metabolism....

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Hara T, Koda A, Nozawa N, et al. Combination of 5-aminolevulinic acid and ferrous ion reduces plasma glucose and hemoglobin A1c levels in Zucker diabetic fatty rats. FEBS Open Bio. 2016;6(6):515-28doi: 10.1002/2211-5463.12048.
Hara, T., Koda, A., Nozawa, N., Ota, U., Kondo, H., Nakagawa, H., Kamiya, A., Miyashita, K., Itoh, H., Nakajima, M., & Tanaka, T. (2016). Combination of 5-aminolevulinic acid and ferrous ion reduces plasma glucose and hemoglobin A1c levels in Zucker diabetic fatty rats. FEBS open bio, 6(6), 515-28. https://doi.org/10.1002/2211-5463.12048
Hara, Takeshi, et al. "Combination of 5-aminolevulinic acid and ferrous ion reduces plasma glucose and hemoglobin A1c levels in Zucker diabetic fatty rats." FEBS open bio vol. 6,6 (2016): 515-28. doi: https://doi.org/10.1002/2211-5463.12048
Hara T, Koda A, Nozawa N, Ota U, Kondo H, Nakagawa H, Kamiya A, Miyashita K, Itoh H, Nakajima M, Tanaka T. Combination of 5-aminolevulinic acid and ferrous ion reduces plasma glucose and hemoglobin A1c levels in Zucker diabetic fatty rats. FEBS Open Bio. 2016 Apr 29;6(6):515-28. doi: 10.1002/2211-5463.12048. eCollection 2016 Jun. PMID: 27239432; PMCID: PMC4880722.
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Mimicking Tyrosine Phosphorylation in Human Cytochrome c by the Evolved tRNA Synthetase Technique.

Chemistry (Weinheim an der Bergstrasse, Germany)

Guerra-Castellano A, Díaz-Quintana A, Moreno-Beltrán B, López-Prados J, Nieto PM, Meister W, Staffa J, Teixeira M, Hildebrandt P, De la Rosa MA, Díaz-Moreno I.
PMID: 26329855
Chemistry. 2015 Oct 12;21(42):15004-12. doi: 10.1002/chem.201502019. Epub 2015 Aug 21.

Phosphorylation of tyrosine 48 of cytochrome c is related to a wide range of human diseases due to the pleiotropic role of the heme-protein in cell life and death. However, the structural conformation and physicochemical properties of phosphorylated cytochrome...

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Guerra-Castellano A, Díaz-Quintana A, Moreno-Beltrán B, et al. Mimicking Tyrosine Phosphorylation in Human Cytochrome c by the Evolved tRNA Synthetase Technique. Chemistry. 2015;21(42):15004-12doi: 10.1002/chem.201502019.
Guerra-Castellano, A., Díaz-Quintana, A., Moreno-Beltrán, B., López-Prados, J., Nieto, P. M., Meister, W., Staffa, J., Teixeira, M., Hildebrandt, P., De la Rosa, M. A., & Díaz-Moreno, I. (2015). Mimicking Tyrosine Phosphorylation in Human Cytochrome c by the Evolved tRNA Synthetase Technique. Chemistry (Weinheim an der Bergstrasse, Germany), 21(42), 15004-12. https://doi.org/10.1002/chem.201502019
Guerra-Castellano, Alejandra, et al. "Mimicking Tyrosine Phosphorylation in Human Cytochrome c by the Evolved tRNA Synthetase Technique." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 21,42 (2015): 15004-12. doi: https://doi.org/10.1002/chem.201502019
Guerra-Castellano A, Díaz-Quintana A, Moreno-Beltrán B, López-Prados J, Nieto PM, Meister W, Staffa J, Teixeira M, Hildebrandt P, De la Rosa MA, Díaz-Moreno I. Mimicking Tyrosine Phosphorylation in Human Cytochrome c by the Evolved tRNA Synthetase Technique. Chemistry. 2015 Oct 12;21(42):15004-12. doi: 10.1002/chem.201502019. Epub 2015 Aug 21. PMID: 26329855.
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