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Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

k-12

Edwards JS, Palsson BO.
GSID: nVsDZZLJhqcJ
RU Ibarra, JS Edwards, BO Palsson - Nature, 2002 - nature.com

… coli K-12 on several substrates (acetate, succinate, malate, glucose and glycerol). All … coli K-12 on malate was predicted a priori by using PPP. The results for growth with malate … coli K-12 MG1655 annotated genome sequence and...

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Ibarra, R. U., Edwards, J. S., & Palsson, B. O. (2002). Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature, 420(6912), 186-189.
Ibarra, Rafael U., Jeremy S. Edwards, and Bernhard O. Palsson. "Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth." Nature 420.6912 (2002): 186-189.
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Nucleotide sequence of the ugp genes of Escherichia coli K‐12: homology to the maltose system

k-12

[No authors listed]
GSID: CyqLB56rNe0J
P Overduin, W Boos, J Tommassen - Molecular microbiology, 1988 - Wiley Online Library

The nucleotide sequence of the ugp genes of Escherichia Coli K‐12, which encode a phosphate‐limitation inducible uptake system for sn‐glycerol‐3‐phosphate and glycerophosphoryl diesters, was determined. The genetic organization of the operon differed from previously …

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Overduin, P., Boos, W., & Tommassen, J. (1988). Nucleotide sequence of the ugp genes of Escherichia coli K‐12: homology to the maltose system. Molecular microbiology, 2(6), 767-775.
Overduin, P., W. Boos, and J. Tommassen. "Nucleotide sequence of the ugp genes of Escherichia coli K‐12: homology to the maltose system." Molecular microbiology 2.6 (1988): 767-775.
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Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection …

k-12

Conrad TM.
GSID: v-RQiZ5c4lEJ
TM Conrad, AR Joyce, MK Applebee, CL Barrett, B Xie… - Genome biology, 2009 - Springer

… coli K-12 MG1655 that has undergone adaptation in lactate M9 minimal media shows fitness gains of a magnitude similar to those observed in glycerol M9 minimal media [12]. Herein we describe analogous experiments detailing the sequencing of E....

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Conrad, T. M., Joyce, A. R., Applebee, M. K., Barrett, C. L., Xie, B., Gao, Y., & Palsson, B. Ø. (2009). Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome biology, 10(10), 1-12.
Conrad, Tom M., et al. "Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations." Genome biology 10.10 (2009): 1-12.
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Electrooxidation of ethylene glycol and glycerol by Pt based binary and ternary templated catalysts in alkaline media

Louis Stokes Alliances for Minority Participation AND Program Evaluation

[No authors listed]
GSID: yQ87egrbveAJ
A Falase, K Garcia, M Main, C Lau… - ECS …, 2011 - iopscience.iop.org

Spray pyrolysis of metal precursors was used to synthesize binary and ternary templated Pt based catalysts. Characterization of the catalysts was performed using SEM, TEM, and EDS to determine morphology, purity and composition. The electrochemical performance of PtRu, PtSn,...

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Falase, A., Garcia, K., Main, M., Lau, C., & Atanassov, P. (2011). Electrooxidation of ethylene glycol and glycerol by Pt based binary and ternary templated catalysts in alkaline media. ECS Transactions, 41(1), 1681.
Falase, Akinbayowa, et al. "Electrooxidation of ethylene glycol and glycerol by Pt based binary and ternary templated catalysts in alkaline media." ECS Transactions 41.1 (2011): 1681.
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Electrooxidation of ethylene glycol and glycerol by platinum-based binary and ternary nano-structured catalysts

Louis Stokes Alliances for Minority Participation AND Program Evaluation

Serov A.
GSID: YltvMSczN44J
A Falase, M Main, K Garcia, A Serov, C Lau… - Electrochimica …, 2012 - Elsevier

Spray pyrolysis of metal precursors was used to synthesize binary and ternary nano-structured Pt-based catalysts. Characterization of the catalysts was performed using SEM, TEM, and EDS to determine morphology, purity and composition. The electrochemical performance of synthesized Pt 84...

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Falase, A., Main, M., Garcia, K., Serov, A., Lau, C., & Atanassov, P. (2012). Electrooxidation of ethylene glycol and glycerol by platinum-based binary and ternary nano-structured catalysts. Electrochimica Acta, 66, 295-301.
Falase, Akinbayowa, et al. "Electrooxidation of ethylene glycol and glycerol by platinum-based binary and ternary nano-structured catalysts." Electrochimica Acta 66 (2012): 295-301.
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Electrochemical and in situ IR characterization of PtRu catalysts for complete oxidation of ethylene glycol and glycerol

Louis Stokes Alliances for Minority Participation AND Program Evaluation

Atanassov P.
GSID: ovVlT2FyXxsJ
A Falase, K Garcia, C Lau, P Atanassov - Electrochemistry communications, 2011 - Elsevier

Unsupported nanostructured PtRu electrocatalysts were synthesized using a spray pyrolysis process with varying atomic compositions. A ruthenium rich and platinum rich PtRu were compared to supported E-Tek PtRu on Vulcan XC-72 at a pH range from 5 to 8...

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Falase, A., Garcia, K., Lau, C., & Atanassov, P. (2011). Electrochemical and in situ IR characterization of PtRu catalysts for complete oxidation of ethylene glycol and glycerol. Electrochemistry communications, 13(12), 1488-1491.
Falase, Akinbayowa, et al. "Electrochemical and in situ IR characterization of PtRu catalysts for complete oxidation of ethylene glycol and glycerol." Electrochemistry communications 13.12 (2011): 1488-1491.
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Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract.

SpringerPlus

de Alencar Guimaraes NC, Sorgatto M, Peixoto-Nogueira Sde C, Betini JH, Zanoelo FF, Marques MR, de Moraes Polizeli Mde L, Giannesi GC.
PMID: 24010038
Springerplus. 2013 Aug 13;2:380. doi: 10.1186/2193-1801-2-380. eCollection 2013.

This study compares two xylanases produced by filamentous fungi such as A. niger and A. flavus using agroindustrial residues as substract and evaluated the effect of these enzymes on cellulose pulp biobleaching process. Wheat bran was the best carbon...

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de Alencar Guimaraes NC, Sorgatto M, Peixoto-Nogueira Sde C, et al. Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract. Springerplus. 2013;2:380doi: 10.1186/2193-1801-2-380.
de Alencar Guimaraes, N. C., Sorgatto, M., Peixoto-Nogueira, S. d. e. . C., Betini, J. H., Zanoelo, F. F., Marques, M. R., de Moraes Polizeli, M. d. e. . L., & Giannesi, G. C. (2013). Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract. SpringerPlus, 2380. https://doi.org/10.1186/2193-1801-2-380
de Alencar Guimaraes, Nelciele Cavalieri, et al. "Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract." SpringerPlus vol. 2 (2013): 380. doi: https://doi.org/10.1186/2193-1801-2-380
de Alencar Guimaraes NC, Sorgatto M, Peixoto-Nogueira Sde C, Betini JH, Zanoelo FF, Marques MR, de Moraes Polizeli Mde L, Giannesi GC. Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract. Springerplus. 2013 Aug 13;2:380. doi: 10.1186/2193-1801-2-380. eCollection 2013. PMID: 24010038; PMCID: PMC3755788.
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Drop impact and rebound dynamics on an inclined superhydrophobic surface.

Langmuir : the ACS journal of surfaces and colloids

Yeong YH, Burton J, Loth E, Bayer IS.
PMID: 25216298
Langmuir. 2014 Oct 14;30(40):12027-38. doi: 10.1021/la502500z. Epub 2014 Sep 29.

Due to its potential in water-repelling applications, the impact and rebound dynamics of a water drop impinging perpendicular to a horizontal superhydrophobic surface have undergone extensive study. However, drops tend to strike a surface at an angle in applications....

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Yeong YH, Burton J, Loth E, et al. Drop impact and rebound dynamics on an inclined superhydrophobic surface. Langmuir. 2014;30(40):12027-38doi: 10.1021/la502500z.
Yeong, Y. H., Burton, J., Loth, E., & Bayer, I. S. (2014). Drop impact and rebound dynamics on an inclined superhydrophobic surface. Langmuir : the ACS journal of surfaces and colloids, 30(40), 12027-38. https://doi.org/10.1021/la502500z
Yeong, Yong Han, et al. "Drop impact and rebound dynamics on an inclined superhydrophobic surface." Langmuir : the ACS journal of surfaces and colloids vol. 30,40 (2014): 12027-38. doi: https://doi.org/10.1021/la502500z
Yeong YH, Burton J, Loth E, Bayer IS. Drop impact and rebound dynamics on an inclined superhydrophobic surface. Langmuir. 2014 Oct 14;30(40):12027-38. doi: 10.1021/la502500z. Epub 2014 Sep 29. PMID: 25216298.
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Moderate intra-abdominal hypertension is associated with an increased lactate-pyruvate ratio in the rectus abdominis muscle tissue: a pilot study during laparoscopic surgery.

Annals of intensive care

Maddison L, Karjagin J, Tenhunen J, Starkopf J.
PMID: 22873415
Ann Intensive Care. 2012 Jul 05;2:S14. doi: 10.1186/2110-5820-2-S1-S14. Epub 2012 Jul 05.

BACKGROUND: The development of intra-abdominal hypertension [IAH] in critically ill patients admitted to the ICU is an independent predictor of mortality. In an attempt to find an early, clinically relevant metabolic signal of modest IAH, we investigated abdominal wall...

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Maddison L, Karjagin J, Tenhunen J, et al. Moderate intra-abdominal hypertension is associated with an increased lactate-pyruvate ratio in the rectus abdominis muscle tissue: a pilot study during laparoscopic surgery. Ann Intensive Care. 2012;2:S14doi: 10.1186/2110-5820-2-S1-S14.
Maddison, L., Karjagin, J., Tenhunen, J., & Starkopf, J. (2012). Moderate intra-abdominal hypertension is associated with an increased lactate-pyruvate ratio in the rectus abdominis muscle tissue: a pilot study during laparoscopic surgery. Annals of intensive care, 2S14. https://doi.org/10.1186/2110-5820-2-S1-S14
Maddison, Liivi, et al. "Moderate intra-abdominal hypertension is associated with an increased lactate-pyruvate ratio in the rectus abdominis muscle tissue: a pilot study during laparoscopic surgery." Annals of intensive care vol. 2 (2012): S14. doi: https://doi.org/10.1186/2110-5820-2-S1-S14
Maddison L, Karjagin J, Tenhunen J, Starkopf J. Moderate intra-abdominal hypertension is associated with an increased lactate-pyruvate ratio in the rectus abdominis muscle tissue: a pilot study during laparoscopic surgery. Ann Intensive Care. 2012 Jul 05;2:S14. doi: 10.1186/2110-5820-2-S1-S14. Epub 2012 Jul 05. PMID: 22873415; PMCID: PMC3390303.
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High-Resolution MRI Findings following Trigeminal Rhizotomy.

AJNR. American journal of neuroradiology

Northcutt BG, Seeburg DP, Shin J, Aygun N, Herzka DA, Theodros D, Goodwin CR, Bettegowda C, Lim M, Blitz AM.
PMID: 27365326
AJNR Am J Neuroradiol. 2016 Oct;37(10):1920-1924. doi: 10.3174/ajnr.A4868. Epub 2016 Jun 30.

BACKGROUND AND PURPOSE: Patients with trigeminal neuralgia often undergo trigeminal rhizotomy via radiofrequency thermocoagulation or glycerol injection for treatment of symptoms. To date, radiologic changes in patients with trigeminal neuralgia post-rhizotomy have not been described, to our knowledge. The...

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Northcutt BG, Seeburg DP, Shin J, et al. High-Resolution MRI Findings following Trigeminal Rhizotomy. AJNR Am J Neuroradiol. 2016;37(10):1920-1924doi: 10.3174/ajnr.A4868.
Northcutt, B. G., Seeburg, D. P., Shin, J., Aygun, N., Herzka, D. A., Theodros, D., Goodwin, C. R., Bettegowda, C., Lim, M., & Blitz, A. M. (2016). High-Resolution MRI Findings following Trigeminal Rhizotomy. AJNR. American journal of neuroradiology, 37(10), 1920-1924. https://doi.org/10.3174/ajnr.A4868
Northcutt, B G, et al. "High-Resolution MRI Findings following Trigeminal Rhizotomy." AJNR. American journal of neuroradiology vol. 37,10 (2016): 1920-1924. doi: https://doi.org/10.3174/ajnr.A4868
Northcutt BG, Seeburg DP, Shin J, Aygun N, Herzka DA, Theodros D, Goodwin CR, Bettegowda C, Lim M, Blitz AM. High-Resolution MRI Findings following Trigeminal Rhizotomy. AJNR Am J Neuroradiol. 2016 Oct;37(10):1920-1924. doi: 10.3174/ajnr.A4868. Epub 2016 Jun 30. PMID: 27365326; PMCID: PMC7960471.
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Effect on β-galactosidase synthesis and burden on growth of osmotic stress in Escherichia coli.

SpringerPlus

Malakar P, Singh VK, Karmakar R, Venkatesh KV.
PMID: 25674477
Springerplus. 2014 Dec 17;3:748. doi: 10.1186/2193-1801-3-748. eCollection 2014.

Osmotic Shock is known to negatively affect growth rate along with an extended lag phase. The reduction in growth rate can be characterized as burden due to the osmotic stress. Studies have shown that production of unnecessary protein also...

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Malakar P, Singh VK, Karmakar R, et al. Effect on β-galactosidase synthesis and burden on growth of osmotic stress in Escherichia coli. Springerplus. 2014;3:748doi: 10.1186/2193-1801-3-748.
Malakar, P., Singh, V. K., Karmakar, R., & Venkatesh, K. V. (2014). Effect on β-galactosidase synthesis and burden on growth of osmotic stress in Escherichia coli. SpringerPlus, 3748. https://doi.org/10.1186/2193-1801-3-748
Malakar, Pushkar, et al. "Effect on β-galactosidase synthesis and burden on growth of osmotic stress in Escherichia coli." SpringerPlus vol. 3 (2014): 748. doi: https://doi.org/10.1186/2193-1801-3-748
Malakar P, Singh VK, Karmakar R, Venkatesh KV. Effect on β-galactosidase synthesis and burden on growth of osmotic stress in Escherichia coli. Springerplus. 2014 Dec 17;3:748. doi: 10.1186/2193-1801-3-748. eCollection 2014. PMID: 25674477; PMCID: PMC4320194.
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Biosynthesis of catechol melanin from glycerol employing metabolically engineered Escherichia coli.

Microbial cell factories

Mejía-Caballero A, de Anda R, Hernández-Chávez G, Rogg S, Martinez A, Bolívar F, Castaño VM, Gosset G.
PMID: 27659593
Microb Cell Fact. 2016 Sep 22;15(1):161. doi: 10.1186/s12934-016-0561-0.

BACKGROUND: Melanins comprise a chemically-diverse group of polymeric pigments whose function is related to protection against physical and chemical stress factors. These polymers have current and potential applications in the chemical, medical, electronics and materials industries. The biotechnological production...

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Mejía-Caballero A, de Anda R, Hernández-Chávez G, et al. Biosynthesis of catechol melanin from glycerol employing metabolically engineered Escherichia coli. Microb Cell Fact. 2016;15(1):161doi: 10.1186/s12934-016-0561-0.
Mejía-Caballero, A., de Anda, R., Hernández-Chávez, G., Rogg, S., Martinez, A., Bolívar, F., Castaño, V. M., & Gosset, G. (2016). Biosynthesis of catechol melanin from glycerol employing metabolically engineered Escherichia coli. Microbial cell factories, 15(1), 161. https://doi.org/10.1186/s12934-016-0561-0
Mejía-Caballero, Alejandra, et al. "Biosynthesis of catechol melanin from glycerol employing metabolically engineered Escherichia coli." Microbial cell factories vol. 15,1 (2016): 161. doi: https://doi.org/10.1186/s12934-016-0561-0
Mejía-Caballero A, de Anda R, Hernández-Chávez G, Rogg S, Martinez A, Bolívar F, Castaño VM, Gosset G. Biosynthesis of catechol melanin from glycerol employing metabolically engineered Escherichia coli. Microb Cell Fact. 2016 Sep 22;15(1):161. doi: 10.1186/s12934-016-0561-0. PMID: 27659593; PMCID: PMC5034560.
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Showing 1 to 12 of 6000 entries