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Zeytun A, Sikorski J, Nolan M, et al. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Stand Genomic Sci. 2011;4(2):131-43doi: 10.4056/sigs.1463589.
Zeytun, A., Sikorski, J., Nolan, M., Lapidus, A., Lucas, S., Han, J., Tice, H., Cheng, J. F., Tapia, R., Goodwin, L., Pitluck, S., Liolios, K., Ivanova, N., Mavromatis, K., Mikhailova, N., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., Ngatchou-Djao, O. D., Land, M., Hauser, L., Jeffries, C. D., Han, C., Detter, J. C., Ubler, S., Rohde, M., Tindall, B. J., Göker, M., Wirth, R., Woyke, T., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Klenk, H. P., & Kyrpides, N. C. (2011). Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Standards in genomic sciences, 4(2), 131-43. https://doi.org/10.4056/sigs.1463589
Zeytun, Ahmet, et al. "Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)." Standards in genomic sciences vol. 4,2 (2011): 131-43. doi: https://doi.org/10.4056/sigs.1463589
Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Ngatchou-Djao OD, Land M, Hauser L, Jeffries CD, Han C, Detter JC, Ubler S, Rohde M, Tindall BJ, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Stand Genomic Sci. 2011 Apr 29;4(2):131-43. doi: 10.4056/sigs.1463589. PMID: 21677850; PMCID: PMC3111988.
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Stand Genomic Sci. 2011 Apr 29;4(2):131-43. doi: 10.4056/sigs.1463589.

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

Standards in genomic sciences

Ahmet Zeytun, Johannes Sikorski, Matt Nolan, Alla Lapidus, Susan Lucas, James Han, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Olivier D Ngatchou-Djao, Miriam Land, Loren Hauser, Cynthia D Jeffries, Cliff Han, John C Detter, Susanne Ubler, Manfred Rohde, Brian J Tindall, Markus Göker, Reinhard Wirth, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk, Nikos C Kyrpides

PMID: 21677850 PMCID: PMC3111988 DOI: 10.4056/sigs.1463589

Abstract

Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2)via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Keywords: Aquificaceae; Aquificae; GEBA; Gram-negative; aerobic; hydrogen-oxidizing; non sporeforming; nonmotile; obligately chemolithoautotrophic; rod shaped; strictly thermophilic

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