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High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.

Standards in genomic sciences

Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP.
PMID: 26925197
Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016.

Thermus amyloliquefaciens type strain YIM 77409(T) is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we describe the features of strain YIM 77409(T) together...

Permanent draft genome of .

Standards in genomic sciences

Boden R, Hutt LP, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Woyke T, Kyrpides N.
PMID: 27708749
Stand Genomic Sci. 2016 Sep 26;11:74. doi: 10.1186/s40793-016-0188-0. eCollection 2016.

No abstract available.

Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus".

Genome announcements

Lee LL, Izquierdo JA, Blumer-Schuette SE, Zurawski JV, Conway JM, Cottingham RW, Huntemann M, Copeland A, Chen IM, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Shapiro N, Nordberg HP, Cantor MN, Hua SX, Woyke T, Kelly RM.
PMID: 25977428
Genome Announc. 2015 May 14;3(3). doi: 10.1128/genomeA.00440-15.

The genus Caldicellulosiruptor contains extremely thermophilic, cellulolytic bacteria capable of lignocellulose deconstruction. Currently, complete genome sequences for eleven Caldicellulosiruptor species are available. Here, we report genome sequences for three additional Caldicellulosiruptor species: Rt8.B8 DSM 8990 (New Zealand), Wai35.B1 DSM...

Oxygen-driven competition between low-dimensional structures of Sr3CoMO6 and Sr3CoMO7-δ with M = Ru, Ir.

Dalton transactions (Cambridge, England : 2003)

Mikhailova D, Reichel P, Tsirlin AA, Abakumov AM, Senyshyn A, Mogare KM, Schmidt M, Kuo CY, Pao CW, Pi TW, Lee JF, Hu Z, Tjeng LH.
PMID: 25111502
Dalton Trans. 2014 Oct 07;43(37):13883-91. doi: 10.1039/c4dt01893a. Epub 2014 Aug 11.

We have realized a reversible structure transformation of one-dimensional 1D K4CdCl6-type Sr3CoMO6 with the Co(2+)/M(4+) cation ordering into the two-dimensional 2D double layered Ruddlesden-Popper structure Sr3CoMO7-δ with a random distribution of Co and M (with M = Ru, Ir)...

High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum.

Standards in genomic sciences

Sakamoto M, Lapidus AL, Han J, Trong S, Haynes M, Reddy TB, Mikhailova N, Huntemann M, Pati A, Ivanova NN, Pukall R, Markowitz VM, Woyke T, Klenk HP, Kyrpides NC, Ohkuma M.
PMID: 26380636
Stand Genomic Sci. 2015 Aug 02;10:48. doi: 10.1186/s40793-015-0045-6. eCollection 2015.

Bacteroides barnesiae Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. Strain BL2(T) is of interest because it was isolated from the gut of a chicken and the growing awareness that...

Layered-to-Tunnel Structure Transformation and Oxygen Redox Chemistry in LiRhO2 upon Li Extraction and Insertion.

Inorganic chemistry

Mikhailova D, Karakulina OM, Batuk D, Hadermann J, Abakumov AM, Herklotz M, Tsirlin AA, Oswald S, Giebeler L, Schmidt M, Eckert J, Knapp M, Ehrenberg H.
PMID: 27367435
Inorg Chem. 2016 Jul 18;55(14):7079-89. doi: 10.1021/acs.inorgchem.6b01008. Epub 2016 Jul 01.

Layered Li(M,Li)O2 (where M is a transition metal) ordered rock-salt-type structures are used in advanced metal-ion batteries as one of the best hosts for the reversible intercalation of Li ions. Besides the conventional redox reaction involving oxidation/reduction of the...

Periodic forcing of scroll rings and control of Winfree turbulence in excitable media.

Chaos (Woodbury, N.Y.)

Alonso S, Sagués F, Mikhailov AS.
PMID: 16822027
Chaos. 2006 Jun;16(2):023124. doi: 10.1063/1.2203589.

By simulations of the Barkley model, action of uniform periodic nonresonant forcing on scroll rings and wave turbulence in three-dimensional excitable media is investigated. Sufficiently strong rapid forcing converts expanding scroll rings into the collapsing ones and suppresses the...

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

Standards in genomic sciences

Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Ngatchou-Djao OD, Land M, Hauser L, Jeffries CD, Han C, Detter JC, Ubler S, Rohde M, Tindall BJ, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.
PMID: 21677850
Stand Genomic Sci. 2011 Apr 29;4(2):131-43. doi: 10.4056/sigs.1463589.

Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability...

Phase transition in a strongly nonideal deuterium plasma generated by quasi-isentropical compression at megabar pressures.

Physical review letters

Fortov VE, Ilkaev RI, Arinin VA, Burtzev VV, Golubev VA, Iosilevskiy IL, Khrustalev VV, Mikhailov AL, Mochalov MA, Ternovoi VY, Zhernokletov MV.
PMID: 17995414
Phys Rev Lett. 2007 Nov 02;99(18):185001. doi: 10.1103/PhysRevLett.99.185001. Epub 2007 Oct 29.

High-explosive driven generators of cylindrical and plane shock waves in D2 and H2 were used for the generation of warm and dense strongly nonideal matter with an intense interparticle interaction and Fermi statistics. Highly resolved flash x-ray diagnostics were...

Complexes of zinc with picolinic and aspartic acids inactivate free varicella-zoster virions.

Metal-based drugs

Shishkov S, Varadinova T, Bontchev P, Nachev C, Michailova E.
PMID: 18472788
Met Based Drugs. 1996;3(1):11-4. doi: 10.1155/MBD.1996.11.

Zn(II) picolinate and aspartate, Zn(pic)(2) and Zn(asp)(2), have been shown to inhibit key steps of the replication of HSV-1. In the present study we describe the effect of Zn(pic)(2) and Zn(asp)(2) on the replication of VZV and on the...

Complete genome sequence of Saccharomonospora viridis type strain (P101).

Standards in genomic sciences

Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Chain P, D'haeseleer P, Chen A, Palaniappan K, Ivanova N, Mavromatis K, Mikhailova N, Rohde M, Tindall BJ, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.
PMID: 21304650
Stand Genomic Sci. 2009 Sep 24;1(2):141-9. doi: 10.4056/sigs.20263.

Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually...

Complete genome sequence of Veillonella parvula type strain (Te3).

Standards in genomic sciences

Gronow S, Welnitz S, Lapidus A, Nolan M, Ivanova N, Glavina Del Rio T, Copeland A, Chen F, Tice H, Pitluck S, Cheng JF, Saunders E, Brettin T, Han C, Detter JC, Bruce D, Goodwin L, Land M, Hauser L, Chang YJ, Jeffries CD, Pati A, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Chain P, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lucas S.
PMID: 21304678
Stand Genomic Sci. 2010 Jan 28;2(1):57-65. doi: 10.4056/sigs.521107.

Veillonella parvula (Veillon and Zuber 1898) Prévot 1933 is the type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated from dental plaque...

Showing 1 to 12 of 290 entries