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Longitudinal tracking of neuronal mitochondria delineates PINK1/Parkin-dependent mechanisms of mitochondrial recycling and degradation.

Science advances

Li H, Doric Z, Berthet A, Jorgens DM, Nguyen MK, Hsieh I, Margulis J, Fang R, Debnath J, Sesaki H, Finkbeiner S, Huang E, Nakamura K.
PMID: 34362731
Sci Adv. 2021 Aug 06;7(32). doi: 10.1126/sciadv.abf6580. Print 2021 Aug.

Altered mitochondrial quality control and dynamics may contribute to neurodegenerative diseases, including Parkinson's disease, but we understand little about these processes in neurons. We combined time-lapse microscopy and correlative light and electron microscopy to track individual mitochondria in neurons...

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Li H, Doric Z, Berthet A, et al. Longitudinal tracking of neuronal mitochondria delineates PINK1/Parkin-dependent mechanisms of mitochondrial recycling and degradation. Sci Adv. 2021;7(32)doi: 10.1126/sciadv.abf6580.
Li, H., Doric, Z., Berthet, A., Jorgens, D. M., Nguyen, M. K., Hsieh, I., Margulis, J., Fang, R., Debnath, J., Sesaki, H., Finkbeiner, S., Huang, E., & Nakamura, K. (2021). Longitudinal tracking of neuronal mitochondria delineates PINK1/Parkin-dependent mechanisms of mitochondrial recycling and degradation. Science advances, 7(32), . https://doi.org/10.1126/sciadv.abf6580
Li, Huihui, et al. "Longitudinal tracking of neuronal mitochondria delineates PINK1/Parkin-dependent mechanisms of mitochondrial recycling and degradation." Science advances vol. 7,32 (2021). doi: https://doi.org/10.1126/sciadv.abf6580
Li H, Doric Z, Berthet A, Jorgens DM, Nguyen MK, Hsieh I, Margulis J, Fang R, Debnath J, Sesaki H, Finkbeiner S, Huang E, Nakamura K. Longitudinal tracking of neuronal mitochondria delineates PINK1/Parkin-dependent mechanisms of mitochondrial recycling and degradation. Sci Adv. 2021 Aug 06;7(32). doi: 10.1126/sciadv.abf6580. Print 2021 Aug. PMID: 34362731; PMCID: PMC8346224.
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Spatial Attention and Saccade Preparation Both Independently Contribute to the Discrimination of Oblique Orientations.

Advances in cognitive psychology

Parker S, Heathcote A, Finkbeiner M.
PMID: 33532009
Adv Cogn Psychol. 2020 Dec 14;16(4):329-343. doi: 10.5709/acp-0307-8. eCollection 2020.

The extent to which the preparation of an eye movement and spatial attention both independently influence performance within the same task has long been debated. In a recent study that combined computational modelling with a dual-task, both saccade preparation...

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Parker S, Heathcote A, Finkbeiner M. Spatial Attention and Saccade Preparation Both Independently Contribute to the Discrimination of Oblique Orientations. Adv Cogn Psychol. 2020;16(4):329-343doi: 10.5709/acp-0307-8.
Parker, S., Heathcote, A., & Finkbeiner, M. (2020). Spatial Attention and Saccade Preparation Both Independently Contribute to the Discrimination of Oblique Orientations. Advances in cognitive psychology, 16(4), 329-343. https://doi.org/10.5709/acp-0307-8
Parker, Samantha, et al. "Spatial Attention and Saccade Preparation Both Independently Contribute to the Discrimination of Oblique Orientations." Advances in cognitive psychology vol. 16,4 (2020): 329-343. doi: https://doi.org/10.5709/acp-0307-8
Parker S, Heathcote A, Finkbeiner M. Spatial Attention and Saccade Preparation Both Independently Contribute to the Discrimination of Oblique Orientations. Adv Cogn Psychol. 2020 Dec 14;16(4):329-343. doi: 10.5709/acp-0307-8. eCollection 2020. PMID: 33532009; PMCID: PMC7839255.
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A modular microfluidic bioreactor to investigate plant cell-cell interactions.

Protoplasma

Finkbeiner T, Manz C, Raorane ML, Metzger C, Schmidt-Speicher L, Shen N, Ahrens R, Maisch J, Nick P, Guber AE.
PMID: 33934215
Protoplasma. 2022 Jan;259(1):173-186. doi: 10.1007/s00709-021-01650-0. Epub 2021 May 02.

Plants produce a wide variety of secondary metabolites, which often are of interest to pharmaceutical and nutraceutical industry. Plant-cell cultures allow producing these metabolites in a standardised manner, independently from various biotic and abiotic factors difficult to control during...

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Finkbeiner T, Manz C, Raorane ML, et al. A modular microfluidic bioreactor to investigate plant cell-cell interactions. Protoplasma. 2021;259(1):173-186doi: 10.1007/s00709-021-01650-0.
Finkbeiner, T., Manz, C., Raorane, M. L., Metzger, C., Schmidt-Speicher, L., Shen, N., Ahrens, R., Maisch, J., Nick, P., & Guber, A. E. (2022). A modular microfluidic bioreactor to investigate plant cell-cell interactions. Protoplasma, 259(1), 173-186. https://doi.org/10.1007/s00709-021-01650-0
Finkbeiner, T, et al. "A modular microfluidic bioreactor to investigate plant cell-cell interactions." Protoplasma vol. 259,1 (2022): 173-186. doi: https://doi.org/10.1007/s00709-021-01650-0
Finkbeiner T, Manz C, Raorane ML, Metzger C, Schmidt-Speicher L, Shen N, Ahrens R, Maisch J, Nick P, Guber AE. A modular microfluidic bioreactor to investigate plant cell-cell interactions. Protoplasma. 2022 Jan;259(1):173-186. doi: 10.1007/s00709-021-01650-0. Epub 2021 May 02. PMID: 33934215.
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Synthesis from hyperproperties.

Acta informatica

Finkbeiner B, Hahn C, Lukert P, Stenger M, Tentrup L.
PMID: 32189717
Acta Inform. 2020;57(1):137-163. doi: 10.1007/s00236-019-00358-2. Epub 2019 Dec 07.

We study the reactive synthesis problem for hyperproperties given as formulas of the temporal logic HyperLTL. Hyperproperties generalize trace properties, i.e., sets of traces, to

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Finkbeiner B, Hahn C, Lukert P, et al. Synthesis from hyperproperties. Acta Inform. 2019;57(1):137-163doi: 10.1007/s00236-019-00358-2.
Finkbeiner, B., Hahn, C., Lukert, P., Stenger, M., & Tentrup, L. (2020). Synthesis from hyperproperties. Acta informatica, 57(1), 137-163. https://doi.org/10.1007/s00236-019-00358-2
Finkbeiner, Bernd, et al. "Synthesis from hyperproperties." Acta informatica vol. 57,1 (2020): 137-163. doi: https://doi.org/10.1007/s00236-019-00358-2
Finkbeiner B, Hahn C, Lukert P, Stenger M, Tentrup L. Synthesis from hyperproperties. Acta Inform. 2020;57(1):137-163. doi: 10.1007/s00236-019-00358-2. Epub 2019 Dec 07. PMID: 32189717; PMCID: PMC7056710.
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A modular microfluidic bioreactor to investigate plant cell-cell interactions.

Protoplasma

Finkbeiner T, Manz C, Raorane ML, Metzger C, Schmidt-Speicher L, Shen N, Ahrens R, Maisch J, Nick P, Guber AE.
PMID: 33934215
Protoplasma. 2021 May 02; doi: 10.1007/s00709-021-01650-0. Epub 2021 May 02.

Plants produce a wide variety of secondary metabolites, which often are of interest to pharmaceutical and nutraceutical industry. Plant-cell cultures allow producing these metabolites in a standardised manner, independently from various biotic and abiotic factors difficult to control during...

Cite
Finkbeiner T, Manz C, Raorane ML, et al. A modular microfluidic bioreactor to investigate plant cell-cell interactions. Protoplasma. 2021;doi: 10.1007/s00709-021-01650-0.
Finkbeiner, T., Manz, C., Raorane, M. L., Metzger, C., Schmidt-Speicher, L., Shen, N., Ahrens, R., Maisch, J., Nick, P., & Guber, A. E. (2021). A modular microfluidic bioreactor to investigate plant cell-cell interactions. Protoplasma, . https://doi.org/10.1007/s00709-021-01650-0
Finkbeiner, T, et al. "A modular microfluidic bioreactor to investigate plant cell-cell interactions." Protoplasma vol. (2021). doi: https://doi.org/10.1007/s00709-021-01650-0
Finkbeiner T, Manz C, Raorane ML, Metzger C, Schmidt-Speicher L, Shen N, Ahrens R, Maisch J, Nick P, Guber AE. A modular microfluidic bioreactor to investigate plant cell-cell interactions. Protoplasma. 2021 May 02; doi: 10.1007/s00709-021-01650-0. Epub 2021 May 02. PMID: 33934215.
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Giant bubbles of the Milky Way.

Scientific American

Finkbeiner D, Su M, Malyshev D.
PMID: 24974709
Sci Am. 2014 Jul;311(1):42-7. doi: 10.1038/scientificamerican0714-42.

No abstract available.

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Finkbeiner D, Su M, Malyshev D. Giant bubbles of the Milky Way. Sci Am. 2014;311(1):42-7doi: 10.1038/scientificamerican0714-42.
Finkbeiner, D., Su, M., & Malyshev, D. (2014). Giant bubbles of the Milky Way. Scientific American, 311(1), 42-7. https://doi.org/10.1038/scientificamerican0714-42
Finkbeiner, Douglas, et al. "Giant bubbles of the Milky Way." Scientific American vol. 311,1 (2014): 42-7. doi: https://doi.org/10.1038/scientificamerican0714-42
Finkbeiner D, Su M, Malyshev D. Giant bubbles of the Milky Way. Sci Am. 2014 Jul;311(1):42-7. doi: 10.1038/scientificamerican0714-42. PMID: 24974709.
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The mystery of the dead galaxies.

Science (New York, N.Y.)

Finkbeiner A.
PMID: 25414284
Science. 2014 Nov 21;346(6212):905-7. doi: 10.1126/science.346.6212.905.

No abstract available.

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Finkbeiner A. The mystery of the dead galaxies. Science. 2014;346(6212):905-7doi: 10.1126/science.346.6212.905.
Finkbeiner, A. (2014). The mystery of the dead galaxies. Science (New York, N.Y.), 346(6212), 905-7. https://doi.org/10.1126/science.346.6212.905
Finkbeiner, Ann. "The mystery of the dead galaxies." Science (New York, N.Y.) vol. 346,6212 (2014): 905-7. doi: https://doi.org/10.1126/science.346.6212.905
Finkbeiner A. The mystery of the dead galaxies. Science. 2014 Nov 21;346(6212):905-7. doi: 10.1126/science.346.6212.905. PMID: 25414284.
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Unwelcome advice?.

Science (New York, N.Y.)

Finkbeiner A.
PMID: 31249041
Science. 2019 Jun 28;364(6447):1222-1225. doi: 10.1126/science.364.6447.1222.

No abstract available.

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Finkbeiner A. Unwelcome advice?. Science. 2019;364(6447):1222-1225doi: 10.1126/science.364.6447.1222.
Finkbeiner, A. (2019). Unwelcome advice?. Science (New York, N.Y.), 364(6447), 1222-1225. https://doi.org/10.1126/science.364.6447.1222
Finkbeiner, Ann. "Unwelcome advice?." Science (New York, N.Y.) vol. 364,6447 (2019): 1222-1225. doi: https://doi.org/10.1126/science.364.6447.1222
Finkbeiner A. Unwelcome advice?. Science. 2019 Jun 28;364(6447):1222-1225. doi: 10.1126/science.364.6447.1222. PMID: 31249041.
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Publisher Correction: Deubiquitinase Usp12 functions noncatalytically to induce autophagy and confer neuroprotection in models of Huntington's disease.

Nature communications

Aron R, Pellegrini P, Green EW, Maddison DC, Opoku-Nsiah K, Oliveira AO, Wong JS, Daub AC, Giorgini F, Muchowski P, Finkbeiner S.
PMID: 32382035
Nat Commun. 2020 May 07;11(1):2374. doi: 10.1038/s41467-020-16216-6.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Aron R, Pellegrini P, Green EW, et al. Publisher Correction: Deubiquitinase Usp12 functions noncatalytically to induce autophagy and confer neuroprotection in models of Huntington's disease. Nat Commun. 2020;11(1):2374doi: 10.1038/s41467-020-16216-6.
Aron, R., Pellegrini, P., Green, E. W., Maddison, D. C., Opoku-Nsiah, K., Oliveira, A. O., Wong, J. S., Daub, A. C., Giorgini, F., Muchowski, P., & Finkbeiner, S. (2020). Publisher Correction: Deubiquitinase Usp12 functions noncatalytically to induce autophagy and confer neuroprotection in models of Huntington's disease. Nature communications, 11(1), 2374. https://doi.org/10.1038/s41467-020-16216-6
Aron, Rebecca, et al. "Publisher Correction: Deubiquitinase Usp12 functions noncatalytically to induce autophagy and confer neuroprotection in models of Huntington's disease." Nature communications vol. 11,1 (2020): 2374. doi: https://doi.org/10.1038/s41467-020-16216-6
Aron R, Pellegrini P, Green EW, Maddison DC, Opoku-Nsiah K, Oliveira AO, Wong JS, Daub AC, Giorgini F, Muchowski P, Finkbeiner S. Publisher Correction: Deubiquitinase Usp12 functions noncatalytically to induce autophagy and confer neuroprotection in models of Huntington's disease. Nat Commun. 2020 May 07;11(1):2374. doi: 10.1038/s41467-020-16216-6. PMID: 32382035; PMCID: PMC7205951.
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Monitoring hyperproperties.

Formal methods in system design

Finkbeiner B, Hahn C, Stenger M, Tentrup L.
PMID: 31806925
Form Methods Syst Des. 2019;54(3):336-363. doi: 10.1007/s10703-019-00334-z. Epub 2019 Jun 25.

Hyperproperties, such as non-interference and observational determinism, relate multiple system executions to each other. They are not expressible in standard temporal logics, like LTL, CTL, and CTL*, and thus cannot be monitored with standard runtime verification techniques.

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Finkbeiner B, Hahn C, Stenger M, et al. Monitoring hyperproperties. Form Methods Syst Des. 2019;54(3):336-363doi: 10.1007/s10703-019-00334-z.
Finkbeiner, B., Hahn, C., Stenger, M., & Tentrup, L. (2019). Monitoring hyperproperties. Formal methods in system design, 54(3), 336-363. https://doi.org/10.1007/s10703-019-00334-z
Finkbeiner, Bernd, et al. "Monitoring hyperproperties." Formal methods in system design vol. 54,3 (2019): 336-363. doi: https://doi.org/10.1007/s10703-019-00334-z
Finkbeiner B, Hahn C, Stenger M, Tentrup L. Monitoring hyperproperties. Form Methods Syst Des. 2019;54(3):336-363. doi: 10.1007/s10703-019-00334-z. Epub 2019 Jun 25. PMID: 31806925; PMCID: PMC6853877.
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CGEF-1 regulates mTORC1 signaling during adult longevity and stress response in .

Oncotarget

Li Y, Finkbeiner S, Ganner A, Gerber J, Klein M, Grafe M, Kandzia J, Thien A, Thedieck K, Breves G, Jank T, Baumeister R, Walz G, Neumann-Haefelin E.
PMID: 29515755
Oncotarget. 2018 Jan 06;9(11):9581-9595. doi: 10.18632/oncotarget.24039. eCollection 2018 Feb 09.

The mechanistic target of rapamycin (mTOR) kinase is central to metabolism and growth, and has a conserved role in aging. mTOR functions in two complexes, mTORC1 and mTORC2. In diverse eukaryotes, inhibition of mTORC1 signaling increases lifespan. mTORC1 transduces...

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Li Y, Finkbeiner S, Ganner A, et al. CGEF-1 regulates mTORC1 signaling during adult longevity and stress response in . Oncotarget. 2018;9(11):9581-9595doi: 10.18632/oncotarget.24039.
Li, Y., Finkbeiner, S., Ganner, A., Gerber, J., Klein, M., Grafe, M., Kandzia, J., Thien, A., Thedieck, K., Breves, G., Jank, T., Baumeister, R., Walz, G., & Neumann-Haefelin, E. (2018). CGEF-1 regulates mTORC1 signaling during adult longevity and stress response in . Oncotarget, 9(11), 9581-9595. https://doi.org/10.18632/oncotarget.24039
Li, Yujie, et al. "CGEF-1 regulates mTORC1 signaling during adult longevity and stress response in ." Oncotarget vol. 9,11 (2018): 9581-9595. doi: https://doi.org/10.18632/oncotarget.24039
Li Y, Finkbeiner S, Ganner A, Gerber J, Klein M, Grafe M, Kandzia J, Thien A, Thedieck K, Breves G, Jank T, Baumeister R, Walz G, Neumann-Haefelin E. CGEF-1 regulates mTORC1 signaling during adult longevity and stress response in . Oncotarget. 2018 Jan 06;9(11):9581-9595. doi: 10.18632/oncotarget.24039. eCollection 2018 Feb 09. PMID: 29515755; PMCID: PMC5839386.
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Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids.

Biology open

Finkbeiner SR, Freeman JJ, Wieck MM, El-Nachef W, Altheim CH, Tsai YH, Huang S, Dyal R, White ES, Grikscheit TC, Teitelbaum DH, Spence JR.
PMID: 26459240
Biol Open. 2015 Oct 12;4(11):1462-72. doi: 10.1242/bio.013235.

Short bowel syndrome (SBS) is characterized by poor nutrient absorption due to a deficit of healthy intestine. Current treatment practices rely on providing supportive medical therapy with parenteral nutrition; while life saving, such interventions are not curative and are...

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Finkbeiner SR, Freeman JJ, Wieck MM, et al. Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids. Biol Open. 2015;4(11):1462-72doi: 10.1242/bio.013235.
Finkbeiner, S. R., Freeman, J. J., Wieck, M. M., El-Nachef, W., Altheim, C. H., Tsai, Y. H., Huang, S., Dyal, R., White, E. S., Grikscheit, T. C., Teitelbaum, D. H., & Spence, J. R. (2015). Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids. Biology open, 4(11), 1462-72. https://doi.org/10.1242/bio.013235
Finkbeiner, Stacy R, et al. "Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids." Biology open vol. 4,11 (2015): 1462-72. doi: https://doi.org/10.1242/bio.013235
Finkbeiner SR, Freeman JJ, Wieck MM, El-Nachef W, Altheim CH, Tsai YH, Huang S, Dyal R, White ES, Grikscheit TC, Teitelbaum DH, Spence JR. Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids. Biol Open. 2015 Oct 12;4(11):1462-72. doi: 10.1242/bio.013235. PMID: 26459240; PMCID: PMC4728347.
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Showing 13 to 24 of 115 entries