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Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis.

Chemical science

Harada H, Onoda A, Uchihashi T, Watanabe H, Sunagawa N, Samejima M, Igarashi K, Hayashi T.
PMID: 28989682
Chem Sci. 2017 Sep 01;8(9):6561-6565. doi: 10.1039/c7sc01672g. Epub 2017 Aug 03.

Cellobiose dehydrogenase (CDH) is a dual domain flavocytochrome, which consists of a dehydrogenase (DH) domain containing a flavin adenine dinucleotide and a cytochrome (CYT) domain containing

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Harada H, Onoda A, Uchihashi T, et al. Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis. Chem Sci. 2017;8(9):6561-6565doi: 10.1039/c7sc01672g.
Harada, H., Onoda, A., Uchihashi, T., Watanabe, H., Sunagawa, N., Samejima, M., Igarashi, K., & Hayashi, T. (2017). Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis. Chemical science, 8(9), 6561-6565. https://doi.org/10.1039/c7sc01672g
Harada, Hirofumi, et al. "Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis." Chemical science vol. 8,9 (2017): 6561-6565. doi: https://doi.org/10.1039/c7sc01672g
Harada H, Onoda A, Uchihashi T, Watanabe H, Sunagawa N, Samejima M, Igarashi K, Hayashi T. Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis. Chem Sci. 2017 Sep 01;8(9):6561-6565. doi: 10.1039/c7sc01672g. Epub 2017 Aug 03. PMID: 28989682; PMCID: PMC5627353.
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Rho GTPases in ameloblast differentiation.

The Japanese dental science review

Otsu K, Harada H.
PMID: 28408954
Jpn Dent Sci Rev. 2016 May;52(2):32-40. doi: 10.1016/j.jdsr.2015.09.001. Epub 2015 Dec 11.

During tooth development, ameloblasts differentiate from inner enamel epithelial cells to enamel-forming cells by modulating the signal pathways mediating epithelial-mesenchymal interaction and a cell-autonomous gene network. The differentiation process of epithelial cells is characterized by marked changes in their...

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Otsu K, Harada H. Rho GTPases in ameloblast differentiation. Jpn Dent Sci Rev. 2015;52(2):32-40doi: 10.1016/j.jdsr.2015.09.001.
Otsu, K., & Harada, H. (2016). Rho GTPases in ameloblast differentiation. The Japanese dental science review, 52(2), 32-40. https://doi.org/10.1016/j.jdsr.2015.09.001
Otsu, Keishi, and Harada, Hidemitsu. "Rho GTPases in ameloblast differentiation." The Japanese dental science review vol. 52,2 (2016): 32-40. doi: https://doi.org/10.1016/j.jdsr.2015.09.001
Otsu K, Harada H. Rho GTPases in ameloblast differentiation. Jpn Dent Sci Rev. 2016 May;52(2):32-40. doi: 10.1016/j.jdsr.2015.09.001. Epub 2015 Dec 11. PMID: 28408954; PMCID: PMC5382790.
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Note: Sample holder with open area for increased deposition rate in plasma immersion ion implantation and deposition.

The Review of scientific instruments

Flege S, Hatada R, Derepa A, Dietz C, Ensinger W, Baba K.
PMID: 28964196
Rev Sci Instrum. 2017 Sep;88(9):096106. doi: 10.1063/1.4995080.

A sample holder with a large open area offers several benefits when used in the process of plasma immersion ion implantation and deposition in which the plasma is generated by a high voltage applied to the sample holder: The...

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Flege S, Hatada R, Derepa A, et al. Note: Sample holder with open area for increased deposition rate in plasma immersion ion implantation and deposition. Rev Sci Instrum. 2017;88(9):096106doi: 10.1063/1.4995080.
Flege, S., Hatada, R., Derepa, A., Dietz, C., Ensinger, W., & Baba, K. (2017). Note: Sample holder with open area for increased deposition rate in plasma immersion ion implantation and deposition. The Review of scientific instruments, 88(9), 096106. https://doi.org/10.1063/1.4995080
Flege, S, et al. "Note: Sample holder with open area for increased deposition rate in plasma immersion ion implantation and deposition." The Review of scientific instruments vol. 88,9 (2017): 096106. doi: https://doi.org/10.1063/1.4995080
Flege S, Hatada R, Derepa A, Dietz C, Ensinger W, Baba K. Note: Sample holder with open area for increased deposition rate in plasma immersion ion implantation and deposition. Rev Sci Instrum. 2017 Sep;88(9):096106. doi: 10.1063/1.4995080. PMID: 28964196.
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Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment.

Genome announcements

Nishi S, Tsubouchi T, Takaki Y, Koyanagi R, Satoh N, Maruyama T, Hatada Y.
PMID: 24233588
Genome Announc. 2013 Nov 14;1(6). doi: 10.1128/genomeA.00927-13.

This report describes the draft genome sequence of Loktanella cinnabarina LL-001(T), which was the first isolated strain from deep-sea floor sediment of the genus Loktanella. The draft genome sequence contains 3,896,245 bp, with a G+C content of 66.7%.

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Nishi S, Tsubouchi T, Takaki Y, et al. Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment. Genome Announc. 2013;1(6)doi: 10.1128/genomeA.00927-13.
Nishi, S., Tsubouchi, T., Takaki, Y., Koyanagi, R., Satoh, N., Maruyama, T., & Hatada, Y. (2013). Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment. Genome announcements, 1(6), . https://doi.org/10.1128/genomeA.00927-13
Nishi, Shinro, et al. "Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment." Genome announcements vol. 1,6 (2013). doi: https://doi.org/10.1128/genomeA.00927-13
Nishi S, Tsubouchi T, Takaki Y, Koyanagi R, Satoh N, Maruyama T, Hatada Y. Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment. Genome Announc. 2013 Nov 14;1(6). doi: 10.1128/genomeA.00927-13. PMID: 24233588; PMCID: PMC3828312.
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Evaluation of gastric submucosal tumors using endoscopically visualized features with submucosal endoscopy.

Oncology letters

Kobara H, Mori H, Rafiq K, Matsunaga T, Fujihara S, Nishiyama N, Ayaki M, Yachida T, Tani J, Miyoshi H, Kato K, Kamada H, Yoneyama H, Morishita A, Tsutsui K, Iwama H, Haba R, Masaki T.
PMID: 24959238
Oncol Lett. 2014 Jul;8(1):161-168. doi: 10.3892/ol.2014.2126. Epub 2014 May 08.

Although the macroscopic characteristics of submucosal tumors (SMTs), such as gastrointestinal stromal tumors (GISTs), have been characterized, the assessment of SMTs by their endoscopically visualized features (EVF; which are observed by endoscopic imaging under direct view) remains unevaluated. The...

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Kobara H, Mori H, Rafiq K, et al. Evaluation of gastric submucosal tumors using endoscopically visualized features with submucosal endoscopy. Oncol Lett. 2014;8(1):161-168doi: 10.3892/ol.2014.2126.
Kobara, H., Mori, H., Rafiq, K., Matsunaga, T., Fujihara, S., Nishiyama, N., Ayaki, M., Yachida, T., Tani, J., Miyoshi, H., Kato, K., Kamada, H., Yoneyama, H., Morishita, A., Tsutsui, K., Iwama, H., Haba, R., & Masaki, T. (2014). Evaluation of gastric submucosal tumors using endoscopically visualized features with submucosal endoscopy. Oncology letters, 8(1), 161-168. https://doi.org/10.3892/ol.2014.2126
Kobara, Hideki, et al. "Evaluation of gastric submucosal tumors using endoscopically visualized features with submucosal endoscopy." Oncology letters vol. 8,1 (2014): 161-168. doi: https://doi.org/10.3892/ol.2014.2126
Kobara H, Mori H, Rafiq K, Matsunaga T, Fujihara S, Nishiyama N, Ayaki M, Yachida T, Tani J, Miyoshi H, Kato K, Kamada H, Yoneyama H, Morishita A, Tsutsui K, Iwama H, Haba R, Masaki T. Evaluation of gastric submucosal tumors using endoscopically visualized features with submucosal endoscopy. Oncol Lett. 2014 Jul;8(1):161-168. doi: 10.3892/ol.2014.2126. Epub 2014 May 08. PMID: 24959238; PMCID: PMC4063622.
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The reductive transformation of decanones with immobilized cells of Nicotiana tabacum.

Plant cell reports

Hamada H, Umeda N, Otsuka N, Kawabe S.
PMID: 24240399
Plant Cell Rep. 1988 Dec;7(7):493-4. doi: 10.1007/BF00272739.

The biotransformation of decanones with immobilized cells of Nicotiana tabacum led to the formation of their corresponding alcohols of high optical purity.

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Hamada H, Umeda N, Otsuka N, et al. The reductive transformation of decanones with immobilized cells of Nicotiana tabacum. Plant Cell Rep. 1988;7(7):493-4doi: 10.1007/BF00272739.
Hamada, H., Umeda, N., Otsuka, N., & Kawabe, S. (1988). The reductive transformation of decanones with immobilized cells of Nicotiana tabacum. Plant cell reports, 7(7), 493-4. https://doi.org/10.1007/BF00272739
Hamada, H, et al. "The reductive transformation of decanones with immobilized cells of Nicotiana tabacum." Plant cell reports vol. 7,7 (1988): 493-4. doi: https://doi.org/10.1007/BF00272739
Hamada H, Umeda N, Otsuka N, Kawabe S. The reductive transformation of decanones with immobilized cells of Nicotiana tabacum. Plant Cell Rep. 1988 Dec;7(7):493-4. doi: 10.1007/BF00272739. PMID: 24240399.
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Disruption of pknG enhances production of gamma-aminobutyric acid by Corynebacterium glutamicum expressing glutamate decarboxylase.

AMB Express

Okai N, Takahashi C, Hatada K, Ogino C, Kondo A.
PMID: 24949255
AMB Express. 2014 Apr 01;4:20. doi: 10.1186/s13568-014-0020-4. eCollection 2014.

Gamma-aminobutyric acid (GABA), a building block of the biodegradable plastic polyamide 4, is synthesized from glucose by Corynebacterium glutamicum that expresses Escherichia coli glutamate decarboxylase (GAD) B encoded by gadB. This strain was engineered to produce GABA more efficiently...

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Okai N, Takahashi C, Hatada K, et al. Disruption of pknG enhances production of gamma-aminobutyric acid by Corynebacterium glutamicum expressing glutamate decarboxylase. AMB Express. 2014;4:20doi: 10.1186/s13568-014-0020-4.
Okai, N., Takahashi, C., Hatada, K., Ogino, C., & Kondo, A. (2014). Disruption of pknG enhances production of gamma-aminobutyric acid by Corynebacterium glutamicum expressing glutamate decarboxylase. AMB Express, 420. https://doi.org/10.1186/s13568-014-0020-4
Okai, Naoko, et al. "Disruption of pknG enhances production of gamma-aminobutyric acid by Corynebacterium glutamicum expressing glutamate decarboxylase." AMB Express vol. 4 (2014): 20. doi: https://doi.org/10.1186/s13568-014-0020-4
Okai N, Takahashi C, Hatada K, Ogino C, Kondo A. Disruption of pknG enhances production of gamma-aminobutyric acid by Corynebacterium glutamicum expressing glutamate decarboxylase. AMB Express. 2014 Apr 01;4:20. doi: 10.1186/s13568-014-0020-4. eCollection 2014. PMID: 24949255; PMCID: PMC4052669.
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Nucleotide sequences and stability of a Nicotiana nuclear DNA segment possessing autonomously replicating ability in yeast.

Plant molecular biology

Ohtani T, Kiyokawa S, Ohgawara T, Harada H, Uchimiya H.
PMID: 24306538
Plant Mol Biol. 1985 Jan;5(1):35-9. doi: 10.1007/BF00017871.

The nucleotide sequence of a tobacco (Nicotiana tabacum) chromosomal DNA segment(t3-ars) capable of replication in yeast (ars: autonomously replicating sequences) is presented. The subcloned region (618 bp) contained 11 bp consensus (5' A/TTTTATPuTTTA/T 3') essential for several yeast ars,...

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Ohtani T, Kiyokawa S, Ohgawara T, et al. Nucleotide sequences and stability of a Nicotiana nuclear DNA segment possessing autonomously replicating ability in yeast. Plant Mol Biol. 1985;5(1):35-9doi: 10.1007/BF00017871.
Ohtani, T., Kiyokawa, S., Ohgawara, T., Harada, H., & Uchimiya, H. (1985). Nucleotide sequences and stability of a Nicotiana nuclear DNA segment possessing autonomously replicating ability in yeast. Plant molecular biology, 5(1), 35-9. https://doi.org/10.1007/BF00017871
Ohtani, T, et al. "Nucleotide sequences and stability of a Nicotiana nuclear DNA segment possessing autonomously replicating ability in yeast." Plant molecular biology vol. 5,1 (1985): 35-9. doi: https://doi.org/10.1007/BF00017871
Ohtani T, Kiyokawa S, Ohgawara T, Harada H, Uchimiya H. Nucleotide sequences and stability of a Nicotiana nuclear DNA segment possessing autonomously replicating ability in yeast. Plant Mol Biol. 1985 Jan;5(1):35-9. doi: 10.1007/BF00017871. PMID: 24306538.
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Evidence for a three-nucleon-force effect in proton-deuteron elastic scattering.

Physical review letters

Cadman RV, Brack J, Cummings WJ, Fedchak JA, Fox BD, Gao H, Glöckle W, Golak J, Grosshauser C, Holt RJ, Jones CE, Kamada H, Kinney ER, Miller MA, Nagengast W, Nogga A, Owen BR, Rith K, Schmidt F, Schulte EC, Sowinski J, Sperisen F, Thorsland EL, Tobey R, Wilbert J, Witała H.
PMID: 11177986
Phys Rev Lett. 2001 Feb 05;86(6):967-70. doi: 10.1103/PhysRevLett.86.967.

Developments in spin-polarized internal targets for storage rings have permitted measurements of 197 MeV polarized protons scattering from vector polarized deuterons. This work presents measurements of the polarization observables A(y), iT11, and C(y,y) in proton-deuteron elastic scattering. When compared...

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Cadman RV, Brack J, Cummings WJ, et al. Evidence for a three-nucleon-force effect in proton-deuteron elastic scattering. Phys Rev Lett. 2001;86(6):967-70doi: 10.1103/PhysRevLett.86.967.
Cadman, R. V., Brack, J., Cummings, W. J., Fedchak, J. A., Fox, B. D., Gao, H., Glöckle, W., Golak, J., Grosshauser, C., Holt, R. J., Jones, C. E., Kamada, H., Kinney, E. R., Miller, M. A., Nagengast, W., Nogga, A., Owen, B. R., Rith, K., Schmidt, F., Schulte, E. C., Sowinski, J., Sperisen, F., Thorsland, E. L., Tobey, R., Wilbert, J., & Witała, H. (2001). Evidence for a three-nucleon-force effect in proton-deuteron elastic scattering. Physical review letters, 86(6), 967-70. https://doi.org/10.1103/PhysRevLett.86.967
Cadman, R V, et al. "Evidence for a three-nucleon-force effect in proton-deuteron elastic scattering." Physical review letters vol. 86,6 (2001): 967-70. doi: https://doi.org/10.1103/PhysRevLett.86.967
Cadman RV, Brack J, Cummings WJ, Fedchak JA, Fox BD, Gao H, Glöckle W, Golak J, Grosshauser C, Holt RJ, Jones CE, Kamada H, Kinney ER, Miller MA, Nagengast W, Nogga A, Owen BR, Rith K, Schmidt F, Schulte EC, Sowinski J, Sperisen F, Thorsland EL, Tobey R, Wilbert J, Witała H. Evidence for a three-nucleon-force effect in proton-deuteron elastic scattering. Phys Rev Lett. 2001 Feb 05;86(6):967-70. doi: 10.1103/PhysRevLett.86.967. PMID: 11177986.
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A Convenient Method for the Preparation of N(2)-Ethylguanine Nucleosides and Nucleotides.

The Journal of organic chemistry

Sako M, Kawada H, Hirota K.
PMID: 11674649
J Org Chem. 1999 Jul 23;64(15):5719-5721. doi: 10.1021/jo990500e.

No abstract available.

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Sako M, Kawada H, Hirota K. A Convenient Method for the Preparation of N(2)-Ethylguanine Nucleosides and Nucleotides. J Org Chem. 1999;64(15):5719-5721doi: 10.1021/jo990500e.
Sako, M., Kawada, H., & Hirota, K. (1999). A Convenient Method for the Preparation of N(2)-Ethylguanine Nucleosides and Nucleotides. The Journal of organic chemistry, 64(15), 5719-5721. https://doi.org/10.1021/jo990500e
Sako, Magoichi, et al. "A Convenient Method for the Preparation of N(2)-Ethylguanine Nucleosides and Nucleotides." The Journal of organic chemistry vol. 64,15 (1999): 5719-5721. doi: https://doi.org/10.1021/jo990500e
Sako M, Kawada H, Hirota K. A Convenient Method for the Preparation of N(2)-Ethylguanine Nucleosides and Nucleotides. J Org Chem. 1999 Jul 23;64(15):5719-5721. doi: 10.1021/jo990500e. PMID: 11674649.
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The Valence-Detrapping Phase Transition in a Crystal of the Mixed-Valence Trinuclear Iron Cyanoacetate Complex [Fe(3)O(O(2)CCH(2)CN)(6)(H(2)O)(3)].

Inorganic chemistry

Nakamoto T, Hanaya M, Katada M, Endo K, Kitagawa S, Sano H.
PMID: 11670092
Inorg Chem. 1997 Sep 24;36(20):4347-4359. doi: 10.1021/ic961438w.

A mixed-valence trinuclear iron cyanoacetate complex, [Fe(3)O(O(2)CCH(2)CN)(6)(H(2)O)(3)] (1), was prepared, and the nature of the electron-detrapping phase transition was studied by a multitemperature single-crystal X-ray structure determination (296, 135, and 100 K) and calorimetry by comparison with an isostructural...

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Nakamoto T, Hanaya M, Katada M, et al. The Valence-Detrapping Phase Transition in a Crystal of the Mixed-Valence Trinuclear Iron Cyanoacetate Complex [Fe(3)O(O(2)CCH(2)CN)(6)(H(2)O)(3)]. Inorg Chem. 1997;36(20):4347-4359doi: 10.1021/ic961438w.
Nakamoto, T., Hanaya, M., Katada, M., Endo, K., Kitagawa, S., & Sano, H. (1997). The Valence-Detrapping Phase Transition in a Crystal of the Mixed-Valence Trinuclear Iron Cyanoacetate Complex [Fe(3)O(O(2)CCH(2)CN)(6)(H(2)O)(3)]. Inorganic chemistry, 36(20), 4347-4359. https://doi.org/10.1021/ic961438w
Nakamoto, Tadahiro, et al. "The Valence-Detrapping Phase Transition in a Crystal of the Mixed-Valence Trinuclear Iron Cyanoacetate Complex [Fe(3)O(O(2)CCH(2)CN)(6)(H(2)O)(3)]." Inorganic chemistry vol. 36,20 (1997): 4347-4359. doi: https://doi.org/10.1021/ic961438w
Nakamoto T, Hanaya M, Katada M, Endo K, Kitagawa S, Sano H. The Valence-Detrapping Phase Transition in a Crystal of the Mixed-Valence Trinuclear Iron Cyanoacetate Complex [Fe(3)O(O(2)CCH(2)CN)(6)(H(2)O)(3)]. Inorg Chem. 1997 Sep 24;36(20):4347-4359. doi: 10.1021/ic961438w. PMID: 11670092.
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Theory of spin-polarized optical potential.

Journal of synchrotron radiation

Hatada K, Tanaka H, Fujikawa T, Hedin L.
PMID: 11512728
J Synchrotron Radiat. 2001 Mar 01;8:210-2. doi: 10.1107/s0909049500019233.

We develop an approximation for the non-local spin-polarized optical potential theory for atoms in solids at intermediate and high energy. The present approximation for the optical potential builds on the GW-expression. We separate the RPA polarization propagator into a...

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Hatada K, Tanaka H, Fujikawa T, et al. Theory of spin-polarized optical potential. J Synchrotron Radiat. 2001;8:210-2doi: 10.1107/s0909049500019233.
Hatada, K., Tanaka, H., Fujikawa, T., & Hedin, L. (2001). Theory of spin-polarized optical potential. Journal of synchrotron radiation, 8210-2. https://doi.org/10.1107/s0909049500019233
Hatada, K, et al. "Theory of spin-polarized optical potential." Journal of synchrotron radiation vol. 8 (2001): 210-2. doi: https://doi.org/10.1107/s0909049500019233
Hatada K, Tanaka H, Fujikawa T, Hedin L. Theory of spin-polarized optical potential. J Synchrotron Radiat. 2001 Mar 01;8:210-2. doi: 10.1107/s0909049500019233. PMID: 11512728.
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Showing 25 to 36 of 1061 entries