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Draft genome sequences of 24 microbial strains assembled from direct sequencing from 4 stool samples.

Genome announcements

Jeraldo P, Hernández Á, White BA, O'Brien D, Ahlquist D, Boardman L, Chia N.
PMID: 26021920
Genome Announc. 2015 May 28;3(3). doi: 10.1128/genomeA.00526-15.

The ability to assemble genomes from metagenomic sequencing avoids the need for culture and any associated culture biases. We assembled 24 essentially complete draft genomes from metagenomic pair-end and size-selected mate pair sequencing from 4 stool samples, 2 from...

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Jeraldo P, Hernández Á, White BA, et al. Draft genome sequences of 24 microbial strains assembled from direct sequencing from 4 stool samples. Genome Announc. 2015;3(3)doi: 10.1128/genomeA.00526-15.
Jeraldo, P., Hernández, �. �., White, B. A., O'Brien, D., Ahlquist, D., Boardman, L., & Chia, N. (2015). Draft genome sequences of 24 microbial strains assembled from direct sequencing from 4 stool samples. Genome announcements, 3(3), . https://doi.org/10.1128/genomeA.00526-15
Jeraldo, Patricio, et al. "Draft genome sequences of 24 microbial strains assembled from direct sequencing from 4 stool samples." Genome announcements vol. 3,3 (2015). doi: https://doi.org/10.1128/genomeA.00526-15
Jeraldo P, Hernández Á, White BA, O'Brien D, Ahlquist D, Boardman L, Chia N. Draft genome sequences of 24 microbial strains assembled from direct sequencing from 4 stool samples. Genome Announc. 2015 May 28;3(3). doi: 10.1128/genomeA.00526-15. PMID: 26021920; PMCID: PMC4447905.
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Solvent-Dependent Structure of Iridium Dihydride Complexes: Different Geometries at Low and High Dielectricity of the Medium.

Chemistry (Weinheim an der Bergstrasse, Germany)

Polukeev AV, Marcos R, Ahlquist MS, Wendt OF.
PMID: 26880293
Chemistry. 2016 Mar 14;22(12):4078-86. doi: 10.1002/chem.201505133. Epub 2016 Feb 16.

The hydride iridium pincer complex [(PCyP)IrH2] (PCyP=cis-1,3-bis[(di-tert-butylphosphino)methyl]cyclohexane, 1) reveals remarkably solvent-dependent hydride chemical shifts, isotope chemical shifts, JHD and T1(min), with rHH increasing upon moving to more polar medium. The only known example of such behaviour (complex [(POCOP)IrH2], POCOP=2,6-(tBu2PO)2C6H3)...

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Polukeev AV, Marcos R, Ahlquist MS, et al. Solvent-Dependent Structure of Iridium Dihydride Complexes: Different Geometries at Low and High Dielectricity of the Medium. Chemistry. 2016;22(12):4078-86doi: 10.1002/chem.201505133.
Polukeev, A. V., Marcos, R., Ahlquist, M. S., & Wendt, O. F. (2016). Solvent-Dependent Structure of Iridium Dihydride Complexes: Different Geometries at Low and High Dielectricity of the Medium. Chemistry (Weinheim an der Bergstrasse, Germany), 22(12), 4078-86. https://doi.org/10.1002/chem.201505133
Polukeev, Alexey V, et al. "Solvent-Dependent Structure of Iridium Dihydride Complexes: Different Geometries at Low and High Dielectricity of the Medium." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 22,12 (2016): 4078-86. doi: https://doi.org/10.1002/chem.201505133
Polukeev AV, Marcos R, Ahlquist MS, Wendt OF. Solvent-Dependent Structure of Iridium Dihydride Complexes: Different Geometries at Low and High Dielectricity of the Medium. Chemistry. 2016 Mar 14;22(12):4078-86. doi: 10.1002/chem.201505133. Epub 2016 Feb 16. PMID: 26880293.
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An automatically controlled injector system.

Journal of applied physiology

AHLQUIST RP.
PMID: 12990543
J Appl Physiol. 1952 Jul;5(1):48-50. doi: 10.1152/jappl.1952.5.1.48.

No abstract available.

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AHLQUIST RP. An automatically controlled injector system. J Appl Physiol. 1952;5(1):48-50doi: 10.1152/jappl.1952.5.1.48.
AHLQUIST, R. P. (1952). An automatically controlled injector system. Journal of applied physiology, 5(1), 48-50. https://doi.org/10.1152/jappl.1952.5.1.48
AHLQUIST, R P. "An automatically controlled injector system." Journal of applied physiology vol. 5,1 (1952): 48-50. doi: https://doi.org/10.1152/jappl.1952.5.1.48
AHLQUIST RP. An automatically controlled injector system. J Appl Physiol. 1952 Jul;5(1):48-50. doi: 10.1152/jappl.1952.5.1.48. PMID: 12990543.
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Phycomyces: Mechanical Behavior of Stage II and Stage IV.

Plant physiology

Ahlquist CN.
PMID: 16658373
Plant Physiol. 1973 Mar;51(3):586-7. doi: 10.1104/pp.51.3.586.

No abstract available.

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Ahlquist CN. Phycomyces: Mechanical Behavior of Stage II and Stage IV. Plant Physiol. 1973;51(3):586-7doi: 10.1104/pp.51.3.586.
Ahlquist, C. N. (1973). Phycomyces: Mechanical Behavior of Stage II and Stage IV. Plant physiology, 51(3), 586-7. https://doi.org/10.1104/pp.51.3.586
Ahlquist, C N. "Phycomyces: Mechanical Behavior of Stage II and Stage IV." Plant physiology vol. 51,3 (1973): 586-7. doi: https://doi.org/10.1104/pp.51.3.586
Ahlquist CN. Phycomyces: Mechanical Behavior of Stage II and Stage IV. Plant Physiol. 1973 Mar;51(3):586-7. doi: 10.1104/pp.51.3.586. PMID: 16658373; PMCID: PMC366309.
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Product protection, the key to developing high performance methane selective oxidation catalysts.

Journal of the American Chemical Society

Ahlquist M, Nielsen RJ, Periana RA, Goddard WA.
PMID: 19891471
J Am Chem Soc. 2009 Dec 02;131(47):17110-5. doi: 10.1021/ja903930e.

Selective, direct conversion of methane to methanol might seem an impossible task since the C-H bond energy of methane is 105 kcal mol(-1) compared to the C-H bond energy for methanol of 94. We show here that the Catalytica...

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Ahlquist M, Nielsen RJ, Periana RA, et al. Product protection, the key to developing high performance methane selective oxidation catalysts. J Am Chem Soc. 2009;131(47):17110-5doi: 10.1021/ja903930e.
Ahlquist, M., Nielsen, R. J., Periana, R. A., & Goddard, W. A. (2009). Product protection, the key to developing high performance methane selective oxidation catalysts. Journal of the American Chemical Society, 131(47), 17110-5. https://doi.org/10.1021/ja903930e
Ahlquist, Mårten, et al. "Product protection, the key to developing high performance methane selective oxidation catalysts." Journal of the American Chemical Society vol. 131,47 (2009): 17110-5. doi: https://doi.org/10.1021/ja903930e
Ahlquist M, Nielsen RJ, Periana RA, Goddard WA. Product protection, the key to developing high performance methane selective oxidation catalysts. J Am Chem Soc. 2009 Dec 02;131(47):17110-5. doi: 10.1021/ja903930e. PMID: 19891471.
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Stool DNA testing for cancer surveillance in inflammatory bowel disease: an early view.

Therapeutic advances in gastroenterology

Kisiel JB, Ahlquist DA.
PMID: 24003338
Therap Adv Gastroenterol. 2013 Sep;6(5):371-80. doi: 10.1177/1756283X13487941.

Patients with inflammatory bowel disease (IBD) are at increased risk for colorectal cancer (CRC). Despite weak supporting evidence, important logistic barriers and high cost, colonoscopy is currently the only recommended approach to CRC surveillance in patients with IBD. As...

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Kisiel JB, Ahlquist DA. Stool DNA testing for cancer surveillance in inflammatory bowel disease: an early view. Therap Adv Gastroenterol. 2013;6(5):371-80doi: 10.1177/1756283X13487941.
Kisiel, J. B., & Ahlquist, D. A. (2013). Stool DNA testing for cancer surveillance in inflammatory bowel disease: an early view. Therapeutic advances in gastroenterology, 6(5), 371-80. https://doi.org/10.1177/1756283X13487941
Kisiel, John B, and Ahlquist, David A. "Stool DNA testing for cancer surveillance in inflammatory bowel disease: an early view." Therapeutic advances in gastroenterology vol. 6,5 (2013): 371-80. doi: https://doi.org/10.1177/1756283X13487941
Kisiel JB, Ahlquist DA. Stool DNA testing for cancer surveillance in inflammatory bowel disease: an early view. Therap Adv Gastroenterol. 2013 Sep;6(5):371-80. doi: 10.1177/1756283X13487941. PMID: 24003338; PMCID: PMC3756632.
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A DFT study: why do [Ni(P(R)(2)N(R')2)2]2+ complexes facilitate the electrocatalytic oxidation of formate?.

Inorganic chemistry

Xue L, Ahlquist MS.
PMID: 24635499
Inorg Chem. 2014 Apr 07;53(7):3281-9. doi: 10.1021/ic4027317. Epub 2014 Mar 18.

We present a DFT study of the reaction mechanism on electrocatalytic oxidation of formate by a family of [Ni(P(R)2N(R('))2)2](2+) complexes (P(R)2N(R('))2 = 1,5-diR'-3,7-diR derivative of 1,5-diaza-3,7-diphosphacyclooctane, where R and R' are aryl or alkyl groups). [Ni(P(Ph)2N(Me)2)2](2+) complex 1 was...

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Xue L, Ahlquist MS. A DFT study: why do [Ni(P(R)(2)N(R')2)2]2+ complexes facilitate the electrocatalytic oxidation of formate?. Inorg Chem. 2014;53(7):3281-9doi: 10.1021/ic4027317.
Xue, L., & Ahlquist, M. S. (2014). A DFT study: why do [Ni(P(R)(2)N(R')2)2]2+ complexes facilitate the electrocatalytic oxidation of formate?. Inorganic chemistry, 53(7), 3281-9. https://doi.org/10.1021/ic4027317
Xue, Liqin, and Ahlquist, Mårten S G. "A DFT study: why do [Ni(P(R)(2)N(R')2)2]2+ complexes facilitate the electrocatalytic oxidation of formate?." Inorganic chemistry vol. 53,7 (2014): 3281-9. doi: https://doi.org/10.1021/ic4027317
Xue L, Ahlquist MS. A DFT study: why do [Ni(P(R)(2)N(R')2)2]2+ complexes facilitate the electrocatalytic oxidation of formate?. Inorg Chem. 2014 Apr 07;53(7):3281-9. doi: 10.1021/ic4027317. Epub 2014 Mar 18. PMID: 24635499.
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Non-Human Leukocyte Antigen Antibody-Mediated Lung Transplant Rejection: The Other Anti-A.

The Ochsner journal

Vinson AD, Rampolla-Selles R, Cooper ES, Alquist CR.
PMID: 30275791
Ochsner J. 2018;18(3):260-263. doi: 10.31486/toj.17.0068.

BACKGROUND: Acute rejection of lung allografts is an important contributor to morbidity and mortality in the transplant patient population, resulting in the dysfunction and destruction of the graft by the host's immune system via cellular or antibody-mediated mechanisms. Acute...

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Vinson AD, Rampolla-Selles R, Cooper ES, et al. Non-Human Leukocyte Antigen Antibody-Mediated Lung Transplant Rejection: The Other Anti-A. Ochsner J. 2018;18(3):260-263doi: 10.31486/toj.17.0068.
Vinson, A. D., Rampolla-Selles, R., Cooper, E. S., & Alquist, C. R. (2018). Non-Human Leukocyte Antigen Antibody-Mediated Lung Transplant Rejection: The Other Anti-A. The Ochsner journal, 18(3), 260-263. https://doi.org/10.31486/toj.17.0068
Vinson, Anthony D, et al. "Non-Human Leukocyte Antigen Antibody-Mediated Lung Transplant Rejection: The Other Anti-A." The Ochsner journal vol. 18,3 (2018): 260-263. doi: https://doi.org/10.31486/toj.17.0068
Vinson AD, Rampolla-Selles R, Cooper ES, Alquist CR. Non-Human Leukocyte Antigen Antibody-Mediated Lung Transplant Rejection: The Other Anti-A. Ochsner J. 2018;18(3):260-263. doi: 10.31486/toj.17.0068. PMID: 30275791; PMCID: PMC6162120.
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Identification of Enterobacteriaceae Isolated from Seafoods .

Journal of food protection

Koburger JA, Wahlquist CL.
PMID: 30812171
J Food Prot. 1979 Dec;42(12):956-957. doi: 10.4315/0362-028X-42.12.956.

Fifty-three retail samples of seafood were examined for members of the family Enterobacteriaceae , using violet red bile agar with 1% glucose. Isolation and identification of 99 typical colonies showed them all to be members of the family Enterobacteriaceae...

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Koburger JA, Wahlquist CL. Identification of Enterobacteriaceae Isolated from Seafoods . J Food Prot. 1979;42(12):956-957doi: 10.4315/0362-028X-42.12.956.
Koburger, J. A., & Wahlquist, C. L. (1979). Identification of Enterobacteriaceae Isolated from Seafoods . Journal of food protection, 42(12), 956-957. https://doi.org/10.4315/0362-028X-42.12.956
Koburger, J A, and Wahlquist, C L. "Identification of Enterobacteriaceae Isolated from Seafoods ." Journal of food protection vol. 42,12 (1979): 956-957. doi: https://doi.org/10.4315/0362-028X-42.12.956
Koburger JA, Wahlquist CL. Identification of Enterobacteriaceae Isolated from Seafoods . J Food Prot. 1979 Dec;42(12):956-957. doi: 10.4315/0362-028X-42.12.956. PMID: 30812171.
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Response to: 'Correspondence on 'Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: an exploratory randomised placebo-controlled trial'' by McGonagle .

Annals of the rheumatic diseases

Kragsnaes MS, Kjeldsen J, Horn HC, Munk HL, Pedersen JK, Just SA, Ahlquist P, Davidsen JR, Nilsson AC, Röttger R, Kruhøffer M, Marchesi JR, Kristiansen K, Christensen R, Ellingsen T.
PMID: 34158373
Ann Rheum Dis. 2021 Jun 22; doi: 10.1136/annrheumdis-2021-220910. Epub 2021 Jun 22.

No abstract available.

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Kragsnaes MS, Kjeldsen J, Horn HC, et al. Response to: 'Correspondence on 'Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: an exploratory randomised placebo-controlled trial'' by McGonagle . Ann Rheum Dis. 2021;doi: 10.1136/annrheumdis-2021-220910.
Kragsnaes, M. S., Kjeldsen, J., Horn, H. C., Munk, H. L., Pedersen, J. K., Just, S. A., Ahlquist, P., Davidsen, J. R., Nilsson, A. C., Röttger, R., Kruhøffer, M., Marchesi, J. R., Kristiansen, K., Christensen, R., & Ellingsen, T. (2021). Response to: 'Correspondence on 'Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: an exploratory randomised placebo-controlled trial'' by McGonagle . Annals of the rheumatic diseases, . https://doi.org/10.1136/annrheumdis-2021-220910
Kragsnaes, Maja Skov, et al. "Response to: 'Correspondence on 'Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: an exploratory randomised placebo-controlled trial'' by McGonagle ." Annals of the rheumatic diseases vol. (2021). doi: https://doi.org/10.1136/annrheumdis-2021-220910
Kragsnaes MS, Kjeldsen J, Horn HC, Munk HL, Pedersen JK, Just SA, Ahlquist P, Davidsen JR, Nilsson AC, Röttger R, Kruhøffer M, Marchesi JR, Kristiansen K, Christensen R, Ellingsen T. Response to: 'Correspondence on 'Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: an exploratory randomised placebo-controlled trial'' by McGonagle . Ann Rheum Dis. 2021 Jun 22; doi: 10.1136/annrheumdis-2021-220910. Epub 2021 Jun 22. PMID: 34158373.
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Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture.

Genome biology and evolution

Ahlquist KD, Bañuelos MM, Funk A, Lai J, Rong S, Villanea FA, Witt KE.
PMID: 34028527
Genome Biol Evol. 2021 Jul 06;13(7). doi: 10.1093/gbe/evab115.

The archaic ancestry present in the human genome has captured the imagination of both scientists and the wider public in recent years. This excitement is the result of new studies pushing the envelope of what we can learn from...

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Ahlquist KD, Bañuelos MM, Funk A, et al. Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture. Genome Biol Evol. 2021;13(7)doi: 10.1093/gbe/evab115.
Ahlquist, K. D., Bañuelos, M. M., Funk, A., Lai, J., Rong, S., Villanea, F. A., & Witt, K. E. (2021). Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture. Genome biology and evolution, 13(7), . https://doi.org/10.1093/gbe/evab115
Ahlquist, K D, et al. "Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture." Genome biology and evolution vol. 13,7 (2021). doi: https://doi.org/10.1093/gbe/evab115
Ahlquist KD, Bañuelos MM, Funk A, Lai J, Rong S, Villanea FA, Witt KE. Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture. Genome Biol Evol. 2021 Jul 06;13(7). doi: 10.1093/gbe/evab115. PMID: 34028527; PMCID: PMC8480178.
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Mitochondria-Rich Extracellular Vesicles Rescue Patient-Specific Cardiomyocytes From Doxorubicin Injury: Insights Into the SENECA Trial.

JACC. CardioOncology

O'Brien CG, Ozen MO, Ikeda G, Vaskova E, Jung JH, Bayardo N, Santoso MR, Shi L, Wahlquist C, Jiang Z, Jung Y, Zeng Y, Egan E, Sinclair R, Gee A, Witteles R, Mercola M, Svensson KJ, Demirci U, Yang PC.
PMID: 34604804
JACC CardioOncol. 2021 Jul 27;3(3):428-440. doi: 10.1016/j.jaccao.2021.05.006. eCollection 2021 Sep.

BACKGROUND: Anthracycline-induced cardiomyopathy (AIC) is a significant source of morbidity and mortality in cancer survivors. The role of mesenchymal stem cells (MSCs) in treating AIC was evaluated in the SENECA trial, a Phase 1 National Heart, Lung, and Blood...

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O'Brien CG, Ozen MO, Ikeda G, et al. Mitochondria-Rich Extracellular Vesicles Rescue Patient-Specific Cardiomyocytes From Doxorubicin Injury: Insights Into the SENECA Trial. JACC CardioOncol. 2021;3(3):428-440doi: 10.1016/j.jaccao.2021.05.006.
O'Brien, C. G., Ozen, M. O., Ikeda, G., Vaskova, E., Jung, J. H., Bayardo, N., Santoso, M. R., Shi, L., Wahlquist, C., Jiang, Z., Jung, Y., Zeng, Y., Egan, E., Sinclair, R., Gee, A., Witteles, R., Mercola, M., Svensson, K. J., Demirci, U., & Yang, P. C. (2021). Mitochondria-Rich Extracellular Vesicles Rescue Patient-Specific Cardiomyocytes From Doxorubicin Injury: Insights Into the SENECA Trial. JACC. CardioOncology, 3(3), 428-440. https://doi.org/10.1016/j.jaccao.2021.05.006
O'Brien, Connor G, et al. "Mitochondria-Rich Extracellular Vesicles Rescue Patient-Specific Cardiomyocytes From Doxorubicin Injury: Insights Into the SENECA Trial." JACC. CardioOncology vol. 3,3 (2021): 428-440. doi: https://doi.org/10.1016/j.jaccao.2021.05.006
O'Brien CG, Ozen MO, Ikeda G, Vaskova E, Jung JH, Bayardo N, Santoso MR, Shi L, Wahlquist C, Jiang Z, Jung Y, Zeng Y, Egan E, Sinclair R, Gee A, Witteles R, Mercola M, Svensson KJ, Demirci U, Yang PC. Mitochondria-Rich Extracellular Vesicles Rescue Patient-Specific Cardiomyocytes From Doxorubicin Injury: Insights Into the SENECA Trial. JACC CardioOncol. 2021 Jul 27;3(3):428-440. doi: 10.1016/j.jaccao.2021.05.006. eCollection 2021 Sep. PMID: 34604804; PMCID: PMC8463733.
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