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Applying translational principles to data science curriculum development

science curriculum

Acker A.
GSID: nw1Mw1aYFW4J
L Lyon, E Mattern, A Acker… - iPres 2015 …, 2015 - d-scholarship.pitt.edu

… In this complex landscape, Information Schools (iSchools) are reviewing curriculum requirements … a curriculum mapping exercise, which has built on translational principles (ie “translating research into practice”) [1] and has recognized the distinctiveness of different data science …

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Lyon, L., Mattern, E., Acker, A., & Langmead, A. (2015). Applying translational principles to data science curriculum development. iPres 2015 Proceedings.
Lyon, Liz, et al. "Applying translational principles to data science curriculum development." iPres 2015 Proceedings (2015).
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Assessment in higher STEM education: the now and the future from the students' perspective

STEM education program evaluation

Antera S.
GSID: rM9ma1dI-ggJ
S Antera, R Costa, V Kalfa, P Mendes - International Conference on …, 2018 - Springer

The purpose of this paper is to provide input regarding the students' perspectives on the assessment methods used in Higher Science, Technology, Engineering, and Mathematics (STEM) Education. Are traditional methods still effective? What are the students' perspectives on the...

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Antera, S., Costa, R., Kalfa, V., & Mendes, P. (2018, September). Assessment in higher STEM education: the now and the future from the students’ perspective. In International Conference on Interactive Collaborative Learning (pp. 772-781). Springer, Cham.
Antera, Sofia, et al. "Assessment in higher STEM education: the now and the future from the students’ perspective." International Conference on Interactive Collaborative Learning. Springer, Cham, 2018.
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Crystal structure of ethyl 2-[9-(5-bromo-2-hy-droxy-phen-yl)-1,8-dioxo-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridin-10-yl]acetate.

Acta crystallographica. Section E, Crystallographic communications

Mohamed SK, Akkurt M, Jasinski JP, Abdelhamid AA, Tamam AH, Albayati MR.
PMID: 26870566
Acta Crystallogr E Crystallogr Commun. 2015 Nov 25;71:o989-90. doi: 10.1107/S2056989015022240. eCollection 2015 Dec 01.

In the title compound, C23H24BrNO5, the central 1,4-di-hydro-pyridine ring of the 1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine ring system adopts a half-chair conformation. The two cyclo-hexene rings fused to the central ring both have a twisted-boat conformation. The mean planes of the bromo-hydroxy-phenyl ring...

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Mohamed SK, Akkurt M, Jasinski JP, et al. Crystal structure of ethyl 2-[9-(5-bromo-2-hy-droxy-phen-yl)-1,8-dioxo-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridin-10-yl]acetate. Acta Crystallogr E Crystallogr Commun. 2015;71:o989-90doi: 10.1107/S2056989015022240.
Mohamed, S. K., Akkurt, M., Jasinski, J. P., Abdelhamid, A. A., Tamam, A. H., & Albayati, M. R. (2015). Crystal structure of ethyl 2-[9-(5-bromo-2-hy-droxy-phen-yl)-1,8-dioxo-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridin-10-yl]acetate. Acta crystallographica. Section E, Crystallographic communications, 71o989-90. https://doi.org/10.1107/S2056989015022240
Mohamed, Shaaban K, et al. "Crystal structure of ethyl 2-[9-(5-bromo-2-hy-droxy-phen-yl)-1,8-dioxo-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridin-10-yl]acetate." Acta crystallographica. Section E, Crystallographic communications vol. 71 (2015): o989-90. doi: https://doi.org/10.1107/S2056989015022240
Mohamed SK, Akkurt M, Jasinski JP, Abdelhamid AA, Tamam AH, Albayati MR. Crystal structure of ethyl 2-[9-(5-bromo-2-hy-droxy-phen-yl)-1,8-dioxo-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridin-10-yl]acetate. Acta Crystallogr E Crystallogr Commun. 2015 Nov 25;71:o989-90. doi: 10.1107/S2056989015022240. eCollection 2015 Dec 01. PMID: 26870566; PMCID: PMC4719938.
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A Four Degree of Freedom Robot for Positioning Ultrasound Imaging Catheters.

Journal of mechanisms and robotics

Loschak PM, Degirmenci A, Tenzer Y, Tschabrunn CM, Anter E, Howe RD.
PMID: 27303592
J Mech Robot. 2016 Oct;8(5):0510161-510169. doi: 10.1115/1.4032249. Epub 2016 May 04.

In this paper, we present the design, fabrication, and testing of a robot for automatically positioning ultrasound (US) imaging catheters. Our system will point US catheters to provide real-time imaging of anatomical structures and working instruments during minimally invasive...

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Loschak PM, Degirmenci A, Tenzer Y, et al. A Four Degree of Freedom Robot for Positioning Ultrasound Imaging Catheters. J Mech Robot. 2016;8(5):0510161-510169doi: 10.1115/1.4032249.
Loschak, P. M., Degirmenci, A., Tenzer, Y., Tschabrunn, C. M., Anter, E., & Howe, R. D. (2016). A Four Degree of Freedom Robot for Positioning Ultrasound Imaging Catheters. Journal of mechanisms and robotics, 8(5), 0510161-510169. https://doi.org/10.1115/1.4032249
Loschak, Paul M, et al. "A Four Degree of Freedom Robot for Positioning Ultrasound Imaging Catheters." Journal of mechanisms and robotics vol. 8,5 (2016): 0510161-510169. doi: https://doi.org/10.1115/1.4032249
Loschak PM, Degirmenci A, Tenzer Y, Tschabrunn CM, Anter E, Howe RD. A Four Degree of Freedom Robot for Positioning Ultrasound Imaging Catheters. J Mech Robot. 2016 Oct;8(5):0510161-510169. doi: 10.1115/1.4032249. Epub 2016 May 04. PMID: 27303592; PMCID: PMC4861857.
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Publisher Correction: Affinity purification of cell-specific mitochondria from whole animals resolves patterns of genetic mosaicism.

Nature cell biology

Ahier A, Dai CY, Tweedie A, Bezawork-Geleta A, Kirmes I, Zuryn S.
PMID: 29449617
Nat Cell Biol. 2018 Mar;20(3):361. doi: 10.1038/s41556-018-0055-x.

In the version of this Technical Report originally published, chromosome representations (indicated by black lines) were missing from Fig. 2a due to a technical error. The corrected version of Fig. 2a is shown below. This has now been amended...

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Ahier A, Dai CY, Tweedie A, et al. Publisher Correction: Affinity purification of cell-specific mitochondria from whole animals resolves patterns of genetic mosaicism. Nat Cell Biol. 2018;20(3):361doi: 10.1038/s41556-018-0055-x.
Ahier, A., Dai, C. Y., Tweedie, A., Bezawork-Geleta, A., Kirmes, I., & Zuryn, S. (2018). Publisher Correction: Affinity purification of cell-specific mitochondria from whole animals resolves patterns of genetic mosaicism. Nature cell biology, 20(3), 361. https://doi.org/10.1038/s41556-018-0055-x
Ahier, Arnaud, et al. "Publisher Correction: Affinity purification of cell-specific mitochondria from whole animals resolves patterns of genetic mosaicism." Nature cell biology vol. 20,3 (2018): 361. doi: https://doi.org/10.1038/s41556-018-0055-x
Ahier A, Dai CY, Tweedie A, Bezawork-Geleta A, Kirmes I, Zuryn S. Publisher Correction: Affinity purification of cell-specific mitochondria from whole animals resolves patterns of genetic mosaicism. Nat Cell Biol. 2018 Mar;20(3):361. doi: 10.1038/s41556-018-0055-x. PMID: 29449617.
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Multi-functionality of computer-aided quantitative vertebral fracture morphometry analyses.

Quantitative imaging in medicine and surgery

Oei L, Ly F, El Saddy S, Makurthou AA, Hofman A, van Rooij FJ, Uitterlinden AG, Zillikens MC, Rivadeneira F, Oei EH.
PMID: 24273742
Quant Imaging Med Surg. 2013 Oct;3(5):249-55. doi: 10.3978/j.issn.2223-4292.2013.09.03.

Osteoporotic vertebral fractures are an increasingly active area of research. Oftentimes assessments are performed by software-assisted quantitative morphometry. Here, we will discuss multi-functionality of these data for research purposes. A team of trained research assistants processed lateral spine radiographs...

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Oei L, Ly F, El Saddy S, et al. Multi-functionality of computer-aided quantitative vertebral fracture morphometry analyses. Quant Imaging Med Surg. 2013;3(5):249-55doi: 10.3978/j.issn.2223-4292.2013.09.03.
Oei, L., Ly, F., El Saddy, S., Makurthou, A. A., Hofman, A., van Rooij, F. J., Uitterlinden, A. G., Zillikens, M. C., Rivadeneira, F., & Oei, E. H. (2013). Multi-functionality of computer-aided quantitative vertebral fracture morphometry analyses. Quantitative imaging in medicine and surgery, 3(5), 249-55. https://doi.org/10.3978/j.issn.2223-4292.2013.09.03
Oei, Ling, et al. "Multi-functionality of computer-aided quantitative vertebral fracture morphometry analyses." Quantitative imaging in medicine and surgery vol. 3,5 (2013): 249-55. doi: https://doi.org/10.3978/j.issn.2223-4292.2013.09.03
Oei L, Ly F, El Saddy S, Makurthou AA, Hofman A, van Rooij FJ, Uitterlinden AG, Zillikens MC, Rivadeneira F, Oei EH. Multi-functionality of computer-aided quantitative vertebral fracture morphometry analyses. Quant Imaging Med Surg. 2013 Oct;3(5):249-55. doi: 10.3978/j.issn.2223-4292.2013.09.03. PMID: 24273742; PMCID: PMC3834208.
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Novel regulatory roles of omega-3 fatty acids in metabolic pathways: a proteomics approach.

Nutrition & metabolism

Ahmed AA, Balogun KA, Bykova NV, Cheema SK.
PMID: 24438320
Nutr Metab (Lond). 2014 Jan 17;11(1):6. doi: 10.1186/1743-7075-11-6.

BACKGROUND: Omega-3 polyunsaturated fatty acids (n-3 PUFA) have been shown to alleviate the symptoms of metabolic disorders, such as heart disease, diabetes, obesity and insulin resistance. Several putative mechanisms by which n-3 PUFA elicit beneficial health effects have been...

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Ahmed AA, Balogun KA, Bykova NV, et al. Novel regulatory roles of omega-3 fatty acids in metabolic pathways: a proteomics approach. Nutr Metab (Lond). 2014;11(1):6doi: 10.1186/1743-7075-11-6.
Ahmed, A. A., Balogun, K. A., Bykova, N. V., & Cheema, S. K. (2014). Novel regulatory roles of omega-3 fatty acids in metabolic pathways: a proteomics approach. Nutrition & metabolism, 11(1), 6. https://doi.org/10.1186/1743-7075-11-6
Ahmed, Abeer A, et al. "Novel regulatory roles of omega-3 fatty acids in metabolic pathways: a proteomics approach." Nutrition & metabolism vol. 11,1 (2014): 6. doi: https://doi.org/10.1186/1743-7075-11-6
Ahmed AA, Balogun KA, Bykova NV, Cheema SK. Novel regulatory roles of omega-3 fatty acids in metabolic pathways: a proteomics approach. Nutr Metab (Lond). 2014 Jan 17;11(1):6. doi: 10.1186/1743-7075-11-6. PMID: 24438320; PMCID: PMC3898484.
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American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report.

Annals of the American Thoracic Society

Bender BG, Krishnan JA, Chambers DA, Cloutier MM, Riekert KA, Rand CS, Schatz M, Thomson CC, Wilson SR, Apter A, Carson SS, George M, Gerald JK, Gerald L, Goss CH, Okelo SO, Mularski RA, Nguyen HQ, Patel MR, Szefler SJ, Weiss CH, Wilson KC, Freemer M.
PMID: 26653201
Ann Am Thorac Soc. 2015 Dec;12(12):S213-21. doi: 10.1513/AnnalsATS.201506-367OT.

To advance implementation research (IR) in respiratory, sleep, and critical care medicine, the American Thoracic Society and the Division of Lung Diseases from the NHLBI cosponsored an Implementation Research Workshop on May 17, 2014. The goals of IR are...

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Bender BG, Krishnan JA, Chambers DA, et al. American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report. Ann Am Thorac Soc. 2015;12(12):S213-21doi: 10.1513/AnnalsATS.201506-367OT.
Bender, B. G., Krishnan, J. A., Chambers, D. A., Cloutier, M. M., Riekert, K. A., Rand, C. S., Schatz, M., Thomson, C. C., Wilson, S. R., Apter, A., Carson, S. S., George, M., Gerald, J. K., Gerald, L., Goss, C. H., Okelo, S. O., Mularski, R. A., Nguyen, H. Q., Patel, M. R., Szefler, S. J., Weiss, C. H., Wilson, K. C., & Freemer, M. (2015). American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report. Annals of the American Thoracic Society, 12(12), S213-21. https://doi.org/10.1513/AnnalsATS.201506-367OT
Bender, Bruce G, et al. "American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report." Annals of the American Thoracic Society vol. 12,12 (2015): S213-21. doi: https://doi.org/10.1513/AnnalsATS.201506-367OT
Bender BG, Krishnan JA, Chambers DA, Cloutier MM, Riekert KA, Rand CS, Schatz M, Thomson CC, Wilson SR, Apter A, Carson SS, George M, Gerald JK, Gerald L, Goss CH, Okelo SO, Mularski RA, Nguyen HQ, Patel MR, Szefler SJ, Weiss CH, Wilson KC, Freemer M. American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report. Ann Am Thorac Soc. 2015 Dec;12(12):S213-21. doi: 10.1513/AnnalsATS.201506-367OT. PMID: 26653201; PMCID: PMC5467083.
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The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings.

Stroke research and treatment

Segal Y, Segal L, Blumenfeld-Katzir T, Sasson E, Poliansky V, Loeb E, Levy A, Alter A, Bregman N.
PMID: 26949561
Stroke Res Treat. 2016;2016:6941946. doi: 10.1155/2016/6941946. Epub 2016 Feb 01.

Stroke is a leading cause of death and disability. Effects of stroke include significant deficits in sensory-motor skills and cognitive abilities. At present, there are limited effective interventions for postacute stroke patients. In this preliminary research we studied a...

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Segal Y, Segal L, Blumenfeld-Katzir T, et al. The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings. Stroke Res Treat. 2016;2016:6941946doi: 10.1155/2016/6941946.
Segal, Y., Segal, L., Blumenfeld-Katzir, T., Sasson, E., Poliansky, V., Loeb, E., Levy, A., Alter, A., & Bregman, N. (2016). The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings. Stroke research and treatment, 20166941946. https://doi.org/10.1155/2016/6941946
Segal, Y, et al. "The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings." Stroke research and treatment vol. 2016 (2016): 6941946. doi: https://doi.org/10.1155/2016/6941946
Segal Y, Segal L, Blumenfeld-Katzir T, Sasson E, Poliansky V, Loeb E, Levy A, Alter A, Bregman N. The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings. Stroke Res Treat. 2016;2016:6941946. doi: 10.1155/2016/6941946. Epub 2016 Feb 01. PMID: 26949561; PMCID: PMC4753339.
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Multifunctional Textured Surfaces with Enhanced Friction and Hydrophobic Behaviors Produced by Fiber Debonding and Pullout.

ACS applied materials & interfaces

Rizvi R, Anwer A, Fernie G, Dutta T, Naguib H.
PMID: 27714990
ACS Appl Mater Interfaces. 2016 Nov 02;8(43):29818-29826. doi: 10.1021/acsami.6b11497. Epub 2016 Oct 19.

Fiber debonding and pullout are well-understood processes that occur during damage and failure events in composite materials. In this study, we show how these mechanisms, under controlled conditions, can be used to produce multifunctional textured surfaces. A two-step process...

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Rizvi R, Anwer A, Fernie G, et al. Multifunctional Textured Surfaces with Enhanced Friction and Hydrophobic Behaviors Produced by Fiber Debonding and Pullout. ACS Appl Mater Interfaces. 2016;8(43):29818-29826doi: 10.1021/acsami.6b11497.
Rizvi, R., Anwer, A., Fernie, G., Dutta, T., & Naguib, H. (2016). Multifunctional Textured Surfaces with Enhanced Friction and Hydrophobic Behaviors Produced by Fiber Debonding and Pullout. ACS applied materials & interfaces, 8(43), 29818-29826. https://doi.org/10.1021/acsami.6b11497
Rizvi, Reza, et al. "Multifunctional Textured Surfaces with Enhanced Friction and Hydrophobic Behaviors Produced by Fiber Debonding and Pullout." ACS applied materials & interfaces vol. 8,43 (2016): 29818-29826. doi: https://doi.org/10.1021/acsami.6b11497
Rizvi R, Anwer A, Fernie G, Dutta T, Naguib H. Multifunctional Textured Surfaces with Enhanced Friction and Hydrophobic Behaviors Produced by Fiber Debonding and Pullout. ACS Appl Mater Interfaces. 2016 Nov 02;8(43):29818-29826. doi: 10.1021/acsami.6b11497. Epub 2016 Oct 19. PMID: 27714990.
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Fast piezoelectric valve offering controlled gas injection in magnetically confined fusion plasmas for diagnostic and fuelling purposes.

The Review of scientific instruments

Griener M, Schmitz O, Bald K, Bösser D, Cavedon M, De Marné P, Eich T, Fuchert G, Herrmann A, Kappatou A, Lunt T, Rohde V, Schweer B, Sochor M, Stroth U, Terra A, Wolfrum E.
PMID: 28372367
Rev Sci Instrum. 2017 Mar;88(3):033509. doi: 10.1063/1.4978629.

In magnetically confined fusion plasmas controlled gas injection is crucial for plasma fuelling as well as for various diagnostic applications such as active spectroscopy. We present a new, versatile system for the injection of collimated thermal gas beams into...

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Griener M, Schmitz O, Bald K, et al. Fast piezoelectric valve offering controlled gas injection in magnetically confined fusion plasmas for diagnostic and fuelling purposes. Rev Sci Instrum. 2017;88(3):033509doi: 10.1063/1.4978629.
Griener, M., Schmitz, O., Bald, K., Bösser, D., Cavedon, M., De Marné, P., Eich, T., Fuchert, G., Herrmann, A., Kappatou, A., Lunt, T., Rohde, V., Schweer, B., Sochor, M., Stroth, U., Terra, A., Wolfrum, E. (2017). Fast piezoelectric valve offering controlled gas injection in magnetically confined fusion plasmas for diagnostic and fuelling purposes. The Review of scientific instruments, 88(3), 033509. https://doi.org/10.1063/1.4978629
Griener, M, et al. "Fast piezoelectric valve offering controlled gas injection in magnetically confined fusion plasmas for diagnostic and fuelling purposes." The Review of scientific instruments vol. 88,3 (2017): 033509. doi: https://doi.org/10.1063/1.4978629
Griener M, Schmitz O, Bald K, Bösser D, Cavedon M, De Marné P, Eich T, Fuchert G, Herrmann A, Kappatou A, Lunt T, Rohde V, Schweer B, Sochor M, Stroth U, Terra A, Wolfrum E. Fast piezoelectric valve offering controlled gas injection in magnetically confined fusion plasmas for diagnostic and fuelling purposes. Rev Sci Instrum. 2017 Mar;88(3):033509. doi: 10.1063/1.4978629. PMID: 28372367.
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IWBDA 2014.

ACS synthetic biology

Adler A.
PMID: 26292728
ACS Synth Biol. 2015 Aug 21;4(8):867. doi: 10.1021/acssynbio.5b00150.

No abstract available.

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Adler A. IWBDA 2014. ACS Synth Biol. 2015;4(8):867doi: 10.1021/acssynbio.5b00150.
Adler, A. (2015). IWBDA 2014. ACS synthetic biology, 4(8), 867. https://doi.org/10.1021/acssynbio.5b00150
Adler, Aaron. "IWBDA 2014." ACS synthetic biology vol. 4,8 (2015): 867. doi: https://doi.org/10.1021/acssynbio.5b00150
Adler A. IWBDA 2014. ACS Synth Biol. 2015 Aug 21;4(8):867. doi: 10.1021/acssynbio.5b00150. PMID: 26292728.
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