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Dating the diversification of the major lineages of Ascomycota (Fungi)

STEM and diversification

Prieto M, Wedin M.
GSID: q8n8raoXJ8UJ
M Prieto, M Wedin - PloS one, 2013 - journals.plos.org

… placed at the base of the stem group, corresponding to the … decided to use it to calibrate the stem group (ie the Parmelia–… and used this fossil to calibrate the stem of this group (ie the …

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Prieto, M., & Wedin, M. (2013). Dating the diversification of the major lineages of Ascomycota (Fungi). PloS one, 8(6), e65576.
Prieto, María, and Mats Wedin. "Dating the diversification of the major lineages of Ascomycota (Fungi)." PloS one 8.6 (2013): e65576.
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Improved appreciation of the functioning and importance of biological soil crusts in Europe: the Soil Crust International Project (SCIN).

Biodiversity and conservation

Büdel B, Colesie C, Green TG, Grube M, Lázaro Suau R, Loewen-Schneider K, Maier S, Peer T, Pintado A, Raggio J, Ruprecht U, Sancho LG, Schroeter B, Türk R, Weber B, Wedin M, Westberg M, Williams L, Zheng L.
PMID: 24954978
Biodivers Conserv. 2014;23:1639-1658. doi: 10.1007/s10531-014-0645-2. Epub 2014 Mar 02.

Here we report details of the European research initiative "Soil Crust International" (SCIN) focusing on the biodiversity of biological soil crusts (BSC, composed of bacteria, algae, lichens, and bryophytes) and on functional aspects in their specific environment. Known as...

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Büdel B, Colesie C, Green TG, et al. Improved appreciation of the functioning and importance of biological soil crusts in Europe: the Soil Crust International Project (SCIN). Biodivers Conserv. 2014;23:1639-1658doi: 10.1007/s10531-014-0645-2.
Büdel, B., Colesie, C., Green, T. G., Grube, M., Lázaro Suau, R., Loewen-Schneider, K., Maier, S., Peer, T., Pintado, A., Raggio, J., Ruprecht, U., Sancho, L. G., Schroeter, B., Türk, R., Weber, B., Wedin, M., Westberg, M., Williams, L., & Zheng, L. (2014). Improved appreciation of the functioning and importance of biological soil crusts in Europe: the Soil Crust International Project (SCIN). Biodiversity and conservation, 231639-1658. https://doi.org/10.1007/s10531-014-0645-2
Büdel, Burkhard, et al. "Improved appreciation of the functioning and importance of biological soil crusts in Europe: the Soil Crust International Project (SCIN)." Biodiversity and conservation vol. 23 (2014): 1639-1658. doi: https://doi.org/10.1007/s10531-014-0645-2
Büdel B, Colesie C, Green TG, Grube M, Lázaro Suau R, Loewen-Schneider K, Maier S, Peer T, Pintado A, Raggio J, Ruprecht U, Sancho LG, Schroeter B, Türk R, Weber B, Wedin M, Westberg M, Williams L, Zheng L. Improved appreciation of the functioning and importance of biological soil crusts in Europe: the Soil Crust International Project (SCIN). Biodivers Conserv. 2014;23:1639-1658. doi: 10.1007/s10531-014-0645-2. Epub 2014 Mar 02. PMID: 24954978; PMCID: PMC4058319.
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The effects of repetitive transcranial magnetic stimulation on proliferation and differentiation of neural stem cells.

Anatomy & cell biology

Abbasnia K, Ghanbari A, Abedian M, Ghanbari A, Sharififar S, Azari H.
PMID: 26140221
Anat Cell Biol. 2015 Jun;48(2):104-13. doi: 10.5115/acb.2015.48.2.104. Epub 2015 Jun 26.

Repetitive transcranial magnetic stimulation (rTMS) is a new method for treating many neurological conditions; however, the exact therapeutic mechanisms behind rTMS-induced plasticity are still unknown. Neural stem and progenitor cells (NS/PCs) are active players in brain regeneration and plasticity...

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Abbasnia K, Ghanbari A, Abedian M, et al. The effects of repetitive transcranial magnetic stimulation on proliferation and differentiation of neural stem cells. Anat Cell Biol. 2015;48(2):104-13doi: 10.5115/acb.2015.48.2.104.
Abbasnia, K., Ghanbari, A., Abedian, M., Ghanbari, A., Sharififar, S., & Azari, H. (2015). The effects of repetitive transcranial magnetic stimulation on proliferation and differentiation of neural stem cells. Anatomy & cell biology, 48(2), 104-13. https://doi.org/10.5115/acb.2015.48.2.104
Abbasnia, Keramatollah, et al. "The effects of repetitive transcranial magnetic stimulation on proliferation and differentiation of neural stem cells." Anatomy & cell biology vol. 48,2 (2015): 104-13. doi: https://doi.org/10.5115/acb.2015.48.2.104
Abbasnia K, Ghanbari A, Abedian M, Ghanbari A, Sharififar S, Azari H. The effects of repetitive transcranial magnetic stimulation on proliferation and differentiation of neural stem cells. Anat Cell Biol. 2015 Jun;48(2):104-13. doi: 10.5115/acb.2015.48.2.104. Epub 2015 Jun 26. PMID: 26140221; PMCID: PMC4488638.
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Central Nodes in Protein Interaction Networks Drive Critical Functions in Transforming Growth Factor Beta-1 Stimulated Kidney Cells.

Cell journal

Rabieian R, Abedi M, Gheisari Y.
PMID: 28042536
Cell J. 2017;18(4):514-531. doi: 10.22074/cellj.2016.4718. Epub 2016 Sep 26.

OBJECTIVE: Despite the huge efforts, chronic kidney disease (CKD) remains as an unsolved problem in medicine. Many studies have shown a central role for transforming growth factor beta-1 (TGFβ-1) and its downstream signaling cascades in the pathogenesis of CKD....

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Rabieian R, Abedi M, Gheisari Y. Central Nodes in Protein Interaction Networks Drive Critical Functions in Transforming Growth Factor Beta-1 Stimulated Kidney Cells. Cell J. 2016;18(4):514-531doi: 10.22074/cellj.2016.4718.
Rabieian, R., Abedi, M., & Gheisari, Y. (2017). Central Nodes in Protein Interaction Networks Drive Critical Functions in Transforming Growth Factor Beta-1 Stimulated Kidney Cells. Cell journal, 18(4), 514-531. https://doi.org/10.22074/cellj.2016.4718
Rabieian, Reyhaneh, et al. "Central Nodes in Protein Interaction Networks Drive Critical Functions in Transforming Growth Factor Beta-1 Stimulated Kidney Cells." Cell journal vol. 18,4 (2017): 514-531. doi: https://doi.org/10.22074/cellj.2016.4718
Rabieian R, Abedi M, Gheisari Y. Central Nodes in Protein Interaction Networks Drive Critical Functions in Transforming Growth Factor Beta-1 Stimulated Kidney Cells. Cell J. 2017;18(4):514-531. doi: 10.22074/cellj.2016.4718. Epub 2016 Sep 26. PMID: 28042536; PMCID: PMC5086330.
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Nodes with high centrality in protein interaction networks are responsible for driving signaling pathways in diabetic nephropathy.

PeerJ

Abedi M, Gheisari Y.
PMID: 26557424
PeerJ. 2015 Oct 01;3:e1284. doi: 10.7717/peerj.1284. eCollection 2015.

In spite of huge efforts, chronic diseases remain an unresolved problem in medicine. Systems biology could assist to develop more efficient therapies through providing quantitative holistic sights to these complex disorders. In this study, we have re-analyzed a microarray...

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Abedi M, Gheisari Y. Nodes with high centrality in protein interaction networks are responsible for driving signaling pathways in diabetic nephropathy. PeerJ. 2015;3:e1284doi: 10.7717/peerj.1284.
Abedi, M., & Gheisari, Y. (2015). Nodes with high centrality in protein interaction networks are responsible for driving signaling pathways in diabetic nephropathy. PeerJ, 3e1284. https://doi.org/10.7717/peerj.1284
Abedi, Maryam, and Gheisari, Yousof. "Nodes with high centrality in protein interaction networks are responsible for driving signaling pathways in diabetic nephropathy." PeerJ vol. 3 (2015): e1284. doi: https://doi.org/10.7717/peerj.1284
Abedi M, Gheisari Y. Nodes with high centrality in protein interaction networks are responsible for driving signaling pathways in diabetic nephropathy. PeerJ. 2015 Oct 01;3:e1284. doi: 10.7717/peerj.1284. eCollection 2015. PMID: 26557424; PMCID: PMC4636410.
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Lichen acclimation to changing environments: Photobiont switching vs. climate-specific uniqueness in .

Ecology and evolution

Williams L, Colesie C, Ullmann A, Westberg M, Wedin M, Büdel B.
PMID: 28428847
Ecol Evol. 2017 Mar 16;7(8):2560-2574. doi: 10.1002/ece3.2809. eCollection 2017 Apr.

Unraveling the complex relationship between lichen fungal and algal partners has been crucial in understanding lichen dispersal capacity, evolutionary processes, and responses in the face of environmental change. However, lichen symbiosis remains enigmatic, including the ability of a single...

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Williams L, Colesie C, Ullmann A, et al. Lichen acclimation to changing environments: Photobiont switching vs. climate-specific uniqueness in . Ecol Evol. 2017;7(8):2560-2574doi: 10.1002/ece3.2809.
Williams, L., Colesie, C., Ullmann, A., Westberg, M., Wedin, M., & Büdel, B. (2017). Lichen acclimation to changing environments: Photobiont switching vs. climate-specific uniqueness in . Ecology and evolution, 7(8), 2560-2574. https://doi.org/10.1002/ece3.2809
Williams, Laura, et al. "Lichen acclimation to changing environments: Photobiont switching vs. climate-specific uniqueness in ." Ecology and evolution vol. 7,8 (2017): 2560-2574. doi: https://doi.org/10.1002/ece3.2809
Williams L, Colesie C, Ullmann A, Westberg M, Wedin M, Büdel B. Lichen acclimation to changing environments: Photobiont switching vs. climate-specific uniqueness in . Ecol Evol. 2017 Mar 16;7(8):2560-2574. doi: 10.1002/ece3.2809. eCollection 2017 Apr. PMID: 28428847; PMCID: PMC5395455.
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A Study on Determination of an Optimized Detector for Single Photon Emission Computed Tomography.

World journal of nuclear medicine

Khoshakhlagh M, Islamian JP, Abedi M, Mahmoudian B, Mardanshahi AR.
PMID: 26912973
World J Nucl Med. 2016 Jan-Apr;15(1):12-7. doi: 10.4103/1450-1147.167588.

The detector is a critical component of the single photon emission computed tomography (SPECT) imaging system for giving accurate information from the exact pattern of radionuclide distribution in the target organ. The SIMIND Monte Carlo program was utilized for...

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Khoshakhlagh M, Islamian JP, Abedi M, et al. A Study on Determination of an Optimized Detector for Single Photon Emission Computed Tomography. World J Nucl Med. 2016;15(1):12-7doi: 10.4103/1450-1147.167588.
Khoshakhlagh, M., Islamian, J. P., Abedi, M., Mahmoudian, B., & Mardanshahi, A. R. (2016). A Study on Determination of an Optimized Detector for Single Photon Emission Computed Tomography. World journal of nuclear medicine, 15(1), 12-7. https://doi.org/10.4103/1450-1147.167588
Khoshakhlagh, Mohammad, et al. "A Study on Determination of an Optimized Detector for Single Photon Emission Computed Tomography." World journal of nuclear medicine vol. 15,1 (2016): 12-7. doi: https://doi.org/10.4103/1450-1147.167588
Khoshakhlagh M, Islamian JP, Abedi M, Mahmoudian B, Mardanshahi AR. A Study on Determination of an Optimized Detector for Single Photon Emission Computed Tomography. World J Nucl Med. 2016 Jan-Apr;15(1):12-7. doi: 10.4103/1450-1147.167588. PMID: 26912973; PMCID: PMC4729008.
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Tumor volume is a better predictor of post-operative wound complications compared to tumor size in soft tissue sarcomas of the proximal lower extremity.

Clinical sarcoma research

Ziegele M, King DM, Bedi M.
PMID: 26909140
Clin Sarcoma Res. 2016 Feb 22;6:1. doi: 10.1186/s13569-016-0041-7. eCollection 2016.

BACKGROUND: Wide local excision with or without radiation therapy (RT) and chemotherapy is widely accepted as appropriate management for soft tissue sarcomas (STS) of the extremity. Although survival and local control rates are comparable to amputation, post-operative wound complications...

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Ziegele M, King DM, Bedi M. Tumor volume is a better predictor of post-operative wound complications compared to tumor size in soft tissue sarcomas of the proximal lower extremity. Clin Sarcoma Res. 2016;6:1doi: 10.1186/s13569-016-0041-7.
Ziegele, M., King, D. M., & Bedi, M. (2016). Tumor volume is a better predictor of post-operative wound complications compared to tumor size in soft tissue sarcomas of the proximal lower extremity. Clinical sarcoma research, 61. https://doi.org/10.1186/s13569-016-0041-7
Ziegele, Michael, et al. "Tumor volume is a better predictor of post-operative wound complications compared to tumor size in soft tissue sarcomas of the proximal lower extremity." Clinical sarcoma research vol. 6 (2016): 1. doi: https://doi.org/10.1186/s13569-016-0041-7
Ziegele M, King DM, Bedi M. Tumor volume is a better predictor of post-operative wound complications compared to tumor size in soft tissue sarcomas of the proximal lower extremity. Clin Sarcoma Res. 2016 Feb 22;6:1. doi: 10.1186/s13569-016-0041-7. eCollection 2016. PMID: 26909140; PMCID: PMC4763425.
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Identification of Appropriate Housekeeping Genes for Gene Expression Analysis in Long-term Hypoxia-treated Kidney Cells.

Advanced biomedical research

Moein S, Javanmard SH, Abedi M, Izadpanahi MH, Gheisari Y.
PMID: 28299307
Adv Biomed Res. 2017 Feb 22;6:15. doi: 10.4103/2277-9175.200790. eCollection 2017.

BACKGROUND: Selection of stably expressing housekeeping genes (HKGs) is a crucial step in gene expression analysis. However, there are no universal HKGs for all experiments, and they should be determined by each biologic condition. The aim of this study...

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Moein S, Javanmard SH, Abedi M, et al. Identification of Appropriate Housekeeping Genes for Gene Expression Analysis in Long-term Hypoxia-treated Kidney Cells. Adv Biomed Res. 2017;6:15doi: 10.4103/2277-9175.200790.
Moein, S., Javanmard, S. H., Abedi, M., Izadpanahi, M. H., & Gheisari, Y. (2017). Identification of Appropriate Housekeeping Genes for Gene Expression Analysis in Long-term Hypoxia-treated Kidney Cells. Advanced biomedical research, 615. https://doi.org/10.4103/2277-9175.200790
Moein, Shiva, et al. "Identification of Appropriate Housekeeping Genes for Gene Expression Analysis in Long-term Hypoxia-treated Kidney Cells." Advanced biomedical research vol. 6 (2017): 15. doi: https://doi.org/10.4103/2277-9175.200790
Moein S, Javanmard SH, Abedi M, Izadpanahi MH, Gheisari Y. Identification of Appropriate Housekeeping Genes for Gene Expression Analysis in Long-term Hypoxia-treated Kidney Cells. Adv Biomed Res. 2017 Feb 22;6:15. doi: 10.4103/2277-9175.200790. eCollection 2017. PMID: 28299307; PMCID: PMC5343613.
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Colorectal cancer in Iran: Epidemiology and morphology trends.

EXCLI journal

Rafiemanesh H, Pakzad R, Abedi M, Kor Y, Moludi J, Towhidi F, Reza Makhsosi B, Salehiniya H.
PMID: 28337105
EXCLI J. 2016 Nov 28;15:738-744. doi: 10.17179/excli2016-346. eCollection 2016.

Colorectal cancer is one of the most prevalent cancers in different countries, including Iran. No comprehensive study has been done in the country for colorectal cancer, but information on the incidence and trends is essential to planning. This study...

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Rafiemanesh H, Pakzad R, Abedi M, et al. Colorectal cancer in Iran: Epidemiology and morphology trends. EXCLI J. 2016;15:738-744doi: 10.17179/excli2016-346.
Rafiemanesh, H., Pakzad, R., Abedi, M., Kor, Y., Moludi, J., Towhidi, F., Reza Makhsosi, B., & Salehiniya, H. (2016). Colorectal cancer in Iran: Epidemiology and morphology trends. EXCLI journal, 15738-744. https://doi.org/10.17179/excli2016-346
Rafiemanesh, Hosein, et al. "Colorectal cancer in Iran: Epidemiology and morphology trends." EXCLI journal vol. 15 (2016): 738-744. doi: https://doi.org/10.17179/excli2016-346
Rafiemanesh H, Pakzad R, Abedi M, Kor Y, Moludi J, Towhidi F, Reza Makhsosi B, Salehiniya H. Colorectal cancer in Iran: Epidemiology and morphology trends. EXCLI J. 2016 Nov 28;15:738-744. doi: 10.17179/excli2016-346. eCollection 2016. PMID: 28337105; PMCID: PMC5318687.
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Salvia officinalis L. induces alveolar bud growing in adult female rat mammary glands.

Avicenna journal of phytomedicine

Monsefi M, Abedian M, Azarbahram Z, Ashraf MJ.
PMID: 26693413
Avicenna J Phytomed. 2015 Nov-Dec;5(6):560-7.

OBJECTIVES: In traditional medicine Salvia officinalis (sage) has been used as menstrual cycle regulator. In the present study the effects of sage extract on breast tissue were examined.MATERIALS AND METHODS: Fourteen female rats were divided into two groups: 1)...

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Monsefi M, Abedian M, Azarbahram Z, et al. Salvia officinalis L. induces alveolar bud growing in adult female rat mammary glands. Avicenna J Phytomed. 2015;5(6):560-7
Monsefi, M., Abedian, M., Azarbahram, Z., & Ashraf, M. J. (2015). Salvia officinalis L. induces alveolar bud growing in adult female rat mammary glands. Avicenna journal of phytomedicine, 5(6), 560-7.
Monsefi, Malihezaman, et al. "Salvia officinalis L. induces alveolar bud growing in adult female rat mammary glands." Avicenna journal of phytomedicine vol. 5,6 (2015): 560-7.
Monsefi M, Abedian M, Azarbahram Z, Ashraf MJ. Salvia officinalis L. induces alveolar bud growing in adult female rat mammary glands. Avicenna J Phytomed. 2015 Nov-Dec;5(6):560-7. PMID: 26693413; PMCID: PMC4678501.
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Genetic Analysis of Adenovirus Type 2 II. Preliminary Phenotypic Characterization of Temperature-Sensitive Mutants.

Journal of virology

Weber J, Begin M, Khittoo G.
PMID: 16789144
J Virol. 1975 May;15(5):1049-56. doi: 10.1128/JVI.15.5.1049-1056.1975.

The properties of temperature-sensitive mutants of adenovirus type 2 representing 12 complementation groups were studied. All mutants were normal with respect to adsorption as measured by viral inclusion formation and viral DNA synthesis as shown by velocity sedimentation in...

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Weber J, Begin M, Khittoo G. Genetic Analysis of Adenovirus Type 2 II. Preliminary Phenotypic Characterization of Temperature-Sensitive Mutants. J Virol. 1975;15(5):1049-56doi: 10.1128/JVI.15.5.1049-1056.1975.
Weber, J., Begin, M., & Khittoo, G. (1975). Genetic Analysis of Adenovirus Type 2 II. Preliminary Phenotypic Characterization of Temperature-Sensitive Mutants. Journal of virology, 15(5), 1049-56. https://doi.org/10.1128/JVI.15.5.1049-1056.1975
Weber, J, et al. "Genetic Analysis of Adenovirus Type 2 II. Preliminary Phenotypic Characterization of Temperature-Sensitive Mutants." Journal of virology vol. 15,5 (1975): 1049-56. doi: https://doi.org/10.1128/JVI.15.5.1049-1056.1975
Weber J, Begin M, Khittoo G. Genetic Analysis of Adenovirus Type 2 II. Preliminary Phenotypic Characterization of Temperature-Sensitive Mutants. J Virol. 1975 May;15(5):1049-56. doi: 10.1128/JVI.15.5.1049-1056.1975. PMID: 16789144; PMCID: PMC354558.
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Showing 1 to 12 of 294 entries