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Data integration to prioritize drugs using genomics and curated data.

BioData mining

Louhimo R, Laakso M, Belitskin D, Klefström J, Lehtonen R, Hautaniemi S.
PMID: 27231484
BioData Min. 2016 May 26;9:21. doi: 10.1186/s13040-016-0097-1. eCollection 2016.

BACKGROUND: Genomic alterations affecting drug target proteins occur in several tumor types and are prime candidates for patient-specific tailored treatments. Increasingly, patients likely to benefit from targeted cancer therapy are selected based on molecular alterations. The selection of a...

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Louhimo R, Laakso M, Belitskin D, et al. Data integration to prioritize drugs using genomics and curated data. BioData Min. 2016;9:21doi: 10.1186/s13040-016-0097-1.
Louhimo, R., Laakso, M., Belitskin, D., Klefström, J., Lehtonen, R., & Hautaniemi, S. (2016). Data integration to prioritize drugs using genomics and curated data. BioData mining, 921. https://doi.org/10.1186/s13040-016-0097-1
Louhimo, Riku, et al. "Data integration to prioritize drugs using genomics and curated data." BioData mining vol. 9 (2016): 21. doi: https://doi.org/10.1186/s13040-016-0097-1
Louhimo R, Laakso M, Belitskin D, Klefström J, Lehtonen R, Hautaniemi S. Data integration to prioritize drugs using genomics and curated data. BioData Min. 2016 May 26;9:21. doi: 10.1186/s13040-016-0097-1. eCollection 2016. PMID: 27231484; PMCID: PMC4881054.
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Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species.

Infection ecology & epidemiology

Eriksson P, Mourkas E, González-Acuna D, Olsen B, Ellström P.
PMID: 29152162
Infect Ecol Epidemiol. 2017 Oct 26;7(1):1386536. doi: 10.1080/20008686.2017.1386536. eCollection 2017.

No abstract available.

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Eriksson P, Mourkas E, González-Acuna D, et al. Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species. Infect Ecol Epidemiol. 2017;7(1):1386536doi: 10.1080/20008686.2017.1386536.
Eriksson, P., Mourkas, E., González-Acuna, D., Olsen, B., & Ellström, P. (2017). Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species. Infection ecology & epidemiology, 7(1), 1386536. https://doi.org/10.1080/20008686.2017.1386536
Eriksson, Per, et al. "Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species." Infection ecology & epidemiology vol. 7,1 (2017): 1386536. doi: https://doi.org/10.1080/20008686.2017.1386536
Eriksson P, Mourkas E, González-Acuna D, Olsen B, Ellström P. Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species. Infect Ecol Epidemiol. 2017 Oct 26;7(1):1386536. doi: 10.1080/20008686.2017.1386536. eCollection 2017. PMID: 29152162; PMCID: PMC5678435.
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Polycaprolactone Nanocomposites Reinforced with Cellulose Nanocrystals Surface-Modified via Covalent Grafting or Physisorption: A Comparative Study.

ACS applied materials & interfaces

Boujemaoui A, Cobo Sanchez C, Engström J, Bruce C, Fogelström L, Carlmark A, Malmström E.
PMID: 28895728
ACS Appl Mater Interfaces. 2017 Oct 11;9(40):35305-35318. doi: 10.1021/acsami.7b09009. Epub 2017 Sep 25.

In the present work, cellulose nanocrystals (CNCs) have been surface-modified either via covalent grafting or through physisorption of poly(n-butyl methacrylate) (PBMA) and employed as reinforcement in PCL. Covalent grafting was achieved by surface-initiated atom transfer radical polymerization (SI-ATRP). Two...

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Boujemaoui A, Cobo Sanchez C, Engström J, et al. Polycaprolactone Nanocomposites Reinforced with Cellulose Nanocrystals Surface-Modified via Covalent Grafting or Physisorption: A Comparative Study. ACS Appl Mater Interfaces. 2017;9(40):35305-35318doi: 10.1021/acsami.7b09009.
Boujemaoui, A., Cobo Sanchez, C., Engström, J., Bruce, C., Fogelström, L., Carlmark, A., & Malmström, E. (2017). Polycaprolactone Nanocomposites Reinforced with Cellulose Nanocrystals Surface-Modified via Covalent Grafting or Physisorption: A Comparative Study. ACS applied materials & interfaces, 9(40), 35305-35318. https://doi.org/10.1021/acsami.7b09009
Boujemaoui, Assya, et al. "Polycaprolactone Nanocomposites Reinforced with Cellulose Nanocrystals Surface-Modified via Covalent Grafting or Physisorption: A Comparative Study." ACS applied materials & interfaces vol. 9,40 (2017): 35305-35318. doi: https://doi.org/10.1021/acsami.7b09009
Boujemaoui A, Cobo Sanchez C, Engström J, Bruce C, Fogelström L, Carlmark A, Malmström E. Polycaprolactone Nanocomposites Reinforced with Cellulose Nanocrystals Surface-Modified via Covalent Grafting or Physisorption: A Comparative Study. ACS Appl Mater Interfaces. 2017 Oct 11;9(40):35305-35318. doi: 10.1021/acsami.7b09009. Epub 2017 Sep 25. PMID: 28895728.
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Correction: The Influence of Hormonal Factors on the Risk of Developing Cervical Cancer and Pre-Cancer: Results from the EPIC Cohort.

PloS one

Roura E, Travier N, Waterboer T, de Sanjosé S, Bosch FX, Pawlita M, Pala V, Weiderpass E, Margall N, Dillner J, Gram IT, Tjønneland A, Munk C, Palli D, Khaw KT, Overvad K, Clavel-Chapelon F, Mesrine S, Fournier A, Fortner RT, Ose J, Steffen A, Trichopoulou A, Lagiou P, Orfanos P, Masala G, Tumino R, Sacerdote C, Polidoro S, Mattiello A, Lund E, Peeters PH, Bueno-de-Mesquita HB, Ramón Quirós J, Sánchez MJ, Navarro C, Barricarte A, Larrañaga N, Ekström J, Lindquist D, Idahl A, Travis RC, Merritt MA, Gunter MJ, Rinaldi S, Tommasino M, Franceschi S, Riboli E, Castellsagué X.
PMID: 26954296
PLoS One. 2016 Mar 08;11(3):e0151427. doi: 10.1371/journal.pone.0151427. eCollection 2016.

No abstract available.

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Roura E, Travier N, Waterboer T, et al. Correction: The Influence of Hormonal Factors on the Risk of Developing Cervical Cancer and Pre-Cancer: Results from the EPIC Cohort. PLoS One. 2016;11(3):e0151427doi: 10.1371/journal.pone.0151427.
Roura, E., Travier, N., Waterboer, T., de Sanjosé, S., Bosch, F. X., Pawlita, M., Pala, V., Weiderpass, E., Margall, N., Dillner, J., Gram, I. T., Tjønneland, A., Munk, C., Palli, D., Khaw, K. T., Overvad, K., Clavel-Chapelon, F., Mesrine, S., Fournier, A., Fortner, R. T., Ose, J., Steffen, A., Trichopoulou, A., Lagiou, P., Orfanos, P., Masala, G., Tumino, R., Sacerdote, C., Polidoro, S., Mattiello, A., Lund, E., Peeters, P. H., Bueno-de-Mesquita, H. B., Ramón Quirós, J., Sánchez, M. J., Navarro, C., Barricarte, A., Larrañaga, N., Ekström, J., Lindquist, D., Idahl, A., Travis, R. C., Merritt, M. A., Gunter, M. J., Rinaldi, S., Tommasino, M., Franceschi, S., Riboli, E., & Castellsagué, X. (2016). Correction: The Influence of Hormonal Factors on the Risk of Developing Cervical Cancer and Pre-Cancer: Results from the EPIC Cohort. PloS one, 11(3), e0151427. https://doi.org/10.1371/journal.pone.0151427
Roura, Esther, et al. "Correction: The Influence of Hormonal Factors on the Risk of Developing Cervical Cancer and Pre-Cancer: Results from the EPIC Cohort." PloS one vol. 11,3 (2016): e0151427. doi: https://doi.org/10.1371/journal.pone.0151427
Roura E, Travier N, Waterboer T, de Sanjosé S, Bosch FX, Pawlita M, Pala V, Weiderpass E, Margall N, Dillner J, Gram IT, Tjønneland A, Munk C, Palli D, Khaw KT, Overvad K, Clavel-Chapelon F, Mesrine S, Fournier A, Fortner RT, Ose J, Steffen A, Trichopoulou A, Lagiou P, Orfanos P, Masala G, Tumino R, Sacerdote C, Polidoro S, Mattiello A, Lund E, Peeters PH, Bueno-de-Mesquita HB, Ramón Quirós J, Sánchez MJ, Navarro C, Barricarte A, Larrañaga N, Ekström J, Lindquist D, Idahl A, Travis RC, Merritt MA, Gunter MJ, Rinaldi S, Tommasino M, Franceschi S, Riboli E, Castellsagué X. Correction: The Influence of Hormonal Factors on the Risk of Developing Cervical Cancer and Pre-Cancer: Results from the EPIC Cohort. PLoS One. 2016 Mar 08;11(3):e0151427. doi: 10.1371/journal.pone.0151427. eCollection 2016. PMID: 26954296; PMCID: PMC4783099.
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Correction: Barriers to and Facilitators of Compliance with Clinic-Based Cervical Cancer Screening: Population-Based Cohort Study of Women Aged 23-60 Years.

PloS one

Östensson E, Alder S, Elfström KM, Sundström K, Zethraeus N, Arbyn M, Andersson S.
PMID: 26247359
PLoS One. 2015 Aug 06;10(8):e0135534. doi: 10.1371/journal.pone.0135534. eCollection 2015.

No abstract available.

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Östensson E, Alder S, Elfström KM, et al. Correction: Barriers to and Facilitators of Compliance with Clinic-Based Cervical Cancer Screening: Population-Based Cohort Study of Women Aged 23-60 Years. PLoS One. 2015;10(8):e0135534doi: 10.1371/journal.pone.0135534.
Östensson, E., Alder, S., Elfström, K. M., Sundström, K., Zethraeus, N., Arbyn, M., & Andersson, S. (2015). Correction: Barriers to and Facilitators of Compliance with Clinic-Based Cervical Cancer Screening: Population-Based Cohort Study of Women Aged 23-60 Years. PloS one, 10(8), e0135534. https://doi.org/10.1371/journal.pone.0135534
Östensson, Ellinor, et al. "Correction: Barriers to and Facilitators of Compliance with Clinic-Based Cervical Cancer Screening: Population-Based Cohort Study of Women Aged 23-60 Years." PloS one vol. 10,8 (2015): e0135534. doi: https://doi.org/10.1371/journal.pone.0135534
Östensson E, Alder S, Elfström KM, Sundström K, Zethraeus N, Arbyn M, Andersson S. Correction: Barriers to and Facilitators of Compliance with Clinic-Based Cervical Cancer Screening: Population-Based Cohort Study of Women Aged 23-60 Years. PLoS One. 2015 Aug 06;10(8):e0135534. doi: 10.1371/journal.pone.0135534. eCollection 2015. PMID: 26247359; PMCID: PMC4527785.
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Effects of toxic and non-toxic cyanobacteria on grazing, zooplanktivory and survival of the mysid shrimp Mysis mixta.

Journal of experimental marine biology and ecology

Engström J, Viherluoto M, Viitasalo M.
PMID: 11245880
J Exp Mar Biol Ecol. 2001 Mar 15;257(2):269-280. doi: 10.1016/s0022-0981(00)00339-7.

We measured the effect of toxic and non-toxic cyanobacteria strains on grazing, predation rates and survival of the mysid shrimp Mysis mixta by means of laboratory experiments. Juvenile and adult M. mixta fed most actively on the non-toxic strains...

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Engström J, Viherluoto M, Viitasalo M. Effects of toxic and non-toxic cyanobacteria on grazing, zooplanktivory and survival of the mysid shrimp Mysis mixta. J Exp Mar Biol Ecol. 2001;257(2):269-280doi: 10.1016/s0022-0981(00)00339-7.
Engström, J., Viherluoto, M., & Viitasalo, M. (2001). Effects of toxic and non-toxic cyanobacteria on grazing, zooplanktivory and survival of the mysid shrimp Mysis mixta. Journal of experimental marine biology and ecology, 257(2), 269-280. https://doi.org/10.1016/s0022-0981(00)00339-7
Engström, J, et al. "Effects of toxic and non-toxic cyanobacteria on grazing, zooplanktivory and survival of the mysid shrimp Mysis mixta." Journal of experimental marine biology and ecology vol. 257,2 (2001): 269-280. doi: https://doi.org/10.1016/s0022-0981(00)00339-7
Engström J, Viherluoto M, Viitasalo M. Effects of toxic and non-toxic cyanobacteria on grazing, zooplanktivory and survival of the mysid shrimp Mysis mixta. J Exp Mar Biol Ecol. 2001 Mar 15;257(2):269-280. doi: 10.1016/s0022-0981(00)00339-7. PMID: 11245880.
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Polarization-tunable Yb:KGW laser based on internal conical refraction.

Optics letters

Hellström J, Henricsson H, Pasiskevicius V, Bünting U, Haussmann D.
PMID: 17909572
Opt Lett. 2007 Oct 01;32(19):2783-5. doi: 10.1364/ol.32.002783.

Using internal conical refraction, we demonstrate an Yb:KGW laser where the polarization state can be arbitrarily altered without any additional cavity components. The extinction ratio can also be altered between 1:1 and 40:1. The maximum output power achieved was...

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Hellström J, Henricsson H, Pasiskevicius V, et al. Polarization-tunable Yb:KGW laser based on internal conical refraction. Opt Lett. 2007;32(19):2783-5doi: 10.1364/ol.32.002783.
Hellström, J., Henricsson, H., Pasiskevicius, V., Bünting, U., & Haussmann, D. (2007). Polarization-tunable Yb:KGW laser based on internal conical refraction. Optics letters, 32(19), 2783-5. https://doi.org/10.1364/ol.32.002783
Hellström, Jonas, et al. "Polarization-tunable Yb:KGW laser based on internal conical refraction." Optics letters vol. 32,19 (2007): 2783-5. doi: https://doi.org/10.1364/ol.32.002783
Hellström J, Henricsson H, Pasiskevicius V, Bünting U, Haussmann D. Polarization-tunable Yb:KGW laser based on internal conical refraction. Opt Lett. 2007 Oct 01;32(19):2783-5. doi: 10.1364/ol.32.002783. PMID: 17909572.
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Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection.

Gut pathogens

Feodoroff B, Ellström P, Hyytiäinen H, Sarna S, Hänninen ML, Rautelin H.
PMID: 21171986
Gut Pathog. 2010 Dec 20;2(1):22. doi: 10.1186/1757-4749-2-22.

BACKGROUND: Campylobacter jejuni is a significant cause of bacterial enteritis worldwide. Very little is known about the pathogenicity mechanisms and virulence factors of this important enteropathogen. C. jejuni isolates from 166 Finnish patients, collected from July to December in...

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Feodoroff B, Ellström P, Hyytiäinen H, et al. Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection. Gut Pathog. 2010;2(1):22doi: 10.1186/1757-4749-2-22.
Feodoroff, B., Ellström, P., Hyytiäinen, H., Sarna, S., Hänninen, M. L., & Rautelin, H. (2010). Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection. Gut pathogens, 2(1), 22. https://doi.org/10.1186/1757-4749-2-22
Feodoroff, Benjamin, et al. "Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection." Gut pathogens vol. 2,1 (2010): 22. doi: https://doi.org/10.1186/1757-4749-2-22
Feodoroff B, Ellström P, Hyytiäinen H, Sarna S, Hänninen ML, Rautelin H. Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection. Gut Pathog. 2010 Dec 20;2(1):22. doi: 10.1186/1757-4749-2-22. PMID: 21171986; PMCID: PMC3022560.
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Successful radioimmunotherapy of established syngeneic rat colon carcinoma with 211At-mAb.

EJNMMI research

Eriksson SE, Bäck T, Elgström E, Jensen H, Nilsson R, Lindegren S, Tennvall J.
PMID: 23557183
EJNMMI Res. 2013 Apr 04;3(1):23. doi: 10.1186/2191-219X-3-23.

BACKGROUND: Most carcinomas are prone to metastasize despite successful treatment of the primary tumor. One way to address this clinical challenge may be targeted therapy with α-emitting radionuclides such as astatine-211 (211At). Radioimmunotherapy utilizing α-particle emitting radionuclides is considered...

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Eriksson SE, Bäck T, Elgström E, et al. Successful radioimmunotherapy of established syngeneic rat colon carcinoma with 211At-mAb. EJNMMI Res. 2013;3(1):23doi: 10.1186/2191-219X-3-23.
Eriksson, S. E., Bäck, T., Elgström, E., Jensen, H., Nilsson, R., Lindegren, S., & Tennvall, J. (2013). Successful radioimmunotherapy of established syngeneic rat colon carcinoma with 211At-mAb. EJNMMI research, 3(1), 23. https://doi.org/10.1186/2191-219X-3-23
Eriksson, Sophie E, et al. "Successful radioimmunotherapy of established syngeneic rat colon carcinoma with 211At-mAb." EJNMMI research vol. 3,1 (2013): 23. doi: https://doi.org/10.1186/2191-219X-3-23
Eriksson SE, Bäck T, Elgström E, Jensen H, Nilsson R, Lindegren S, Tennvall J. Successful radioimmunotherapy of established syngeneic rat colon carcinoma with 211At-mAb. EJNMMI Res. 2013 Apr 04;3(1):23. doi: 10.1186/2191-219X-3-23. PMID: 23557183; PMCID: PMC3621254.
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[No title available]

Proceedings of the National Academy of Sciences of the United States of America

Westhoff M, Eldstrom J, Murray CI, Thompson E, Fedida D.
PMID: 30918124
Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7879-7888. doi: 10.1073/pnas.1811623116. Epub 2019 Mar 27.

The

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Westhoff M, Eldstrom J, Murray CI, et al. . Proc Natl Acad Sci U S A. 2019;116(16):7879-7888doi: 10.1073/pnas.1811623116.
Westhoff, M., Eldstrom, J., Murray, C. I., Thompson, E., & Fedida, D. (2019). . Proceedings of the National Academy of Sciences of the United States of America, 116(16), 7879-7888. https://doi.org/10.1073/pnas.1811623116
Westhoff, Maartje, et al. "." Proceedings of the National Academy of Sciences of the United States of America vol. 116,16 (2019): 7879-7888. doi: https://doi.org/10.1073/pnas.1811623116
Westhoff M, Eldstrom J, Murray CI, Thompson E, Fedida D. . Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7879-7888. doi: 10.1073/pnas.1811623116. Epub 2019 Mar 27. PMID: 30918124; PMCID: PMC6475427.
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Evaluation of a Web-Based Stress Management Application-a Feasibility Study.

Journal of technology in behavioral science

Eklund C, Elfström ML, Eriksson Y, Söderlund A.
PMID: 30238058
J Technol Behav Sci. 2018;3(3):150-160. doi: 10.1007/s41347-018-0044-8. Epub 2018 Feb 15.

The aim of the current study was to investigate the feasibility of a Web-based program that promotes behavior change for stress-related problems in terms of the program's acceptability, practicability, and any possible effects. In addition, the aim was also...

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Eklund C, Elfström ML, Eriksson Y, et al. Evaluation of a Web-Based Stress Management Application-a Feasibility Study. J Technol Behav Sci. 2018;3(3):150-160doi: 10.1007/s41347-018-0044-8.
Eklund, C., Elfström, M. L., Eriksson, Y., & Söderlund, A. (2018). Evaluation of a Web-Based Stress Management Application-a Feasibility Study. Journal of technology in behavioral science, 3(3), 150-160. https://doi.org/10.1007/s41347-018-0044-8
Eklund, Caroline, et al. "Evaluation of a Web-Based Stress Management Application-a Feasibility Study." Journal of technology in behavioral science vol. 3,3 (2018): 150-160. doi: https://doi.org/10.1007/s41347-018-0044-8
Eklund C, Elfström ML, Eriksson Y, Söderlund A. Evaluation of a Web-Based Stress Management Application-a Feasibility Study. J Technol Behav Sci. 2018;3(3):150-160. doi: 10.1007/s41347-018-0044-8. Epub 2018 Feb 15. PMID: 30238058; PMCID: PMC6133059.
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The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in .

Frontiers in microbiology

Atterby C, Mourkas E, Méric G, Pascoe B, Wang H, Waldenström J, Sheppard SK, Olsen B, Järhult JD, Ellström P.
PMID: 29651281
Front Microbiol. 2018 Mar 29;9:591. doi: 10.3389/fmicb.2018.00591. eCollection 2018.

No abstract available.

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Atterby C, Mourkas E, Méric G, et al. The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in . Front Microbiol. 2018;9:591doi: 10.3389/fmicb.2018.00591.
Atterby, C., Mourkas, E., Méric, G., Pascoe, B., Wang, H., Waldenström, J., Sheppard, S. K., Olsen, B., Järhult, J. D., & Ellström, P. (2018). The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in . Frontiers in microbiology, 9591. https://doi.org/10.3389/fmicb.2018.00591
Atterby, Clara, et al. "The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in ." Frontiers in microbiology vol. 9 (2018): 591. doi: https://doi.org/10.3389/fmicb.2018.00591
Atterby C, Mourkas E, Méric G, Pascoe B, Wang H, Waldenström J, Sheppard SK, Olsen B, Järhult JD, Ellström P. The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in . Front Microbiol. 2018 Mar 29;9:591. doi: 10.3389/fmicb.2018.00591. eCollection 2018. PMID: 29651281; PMCID: PMC5884941.
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