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A comparison of a campus cluster and open science grid platforms for protein-guided assembly using pegasus workflow management system

science campus

Pavlovikj N, Begcy K, Behera S.
GSID: fuL6qoqydO0J
N Pavlovikj, K Begcy, S Behera… - … Parallel & Distributed …, 2014 - ieeexplore.ieee.org

… We chose two execution platforms for this workflow that represent the campus cluster, Sandhills, and the Open Science Grid. Furthermore, … Section 4 includes overview of the used execution platforms, the campus cluster and the Open Science Grid....

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Pavlovikj, N., Begcy, K., Behera, S., Campbell, M., Walia, H., & Deogun, J. S. (2014, May). A comparison of a campus cluster and open science grid platforms for protein-guided assembly using pegasus workflow management system. In 2014 IEEE International Parallel & Distributed Processing Symposium Workshops (pp. 546-555). IEEE.
Pavlovikj, Natasha, et al. "A comparison of a campus cluster and open science grid platforms for protein-guided assembly using pegasus workflow management system." 2014 IEEE International Parallel & Distributed Processing Symposium Workshops. IEEE, 2014.
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Direct Compositional Characterization of (U,Th)O2 Powders, Microspheres, and Pellets Using TXRF.

Analytical chemistry

Dhara S, Prabhat P, Misra NL.
PMID: 26403807
Anal Chem. 2015 Oct 20;87(20):10262-7. doi: 10.1021/acs.analchem.5b01824. Epub 2015 Oct 05.

A total reflection X-ray fluorescence (TXRF) analysis method for direct compositional characterization of sintered and green (U,Th)O2 samples in different forms (e.g., pellets, powders, and microspheres) without sample dissolution has been developed for the first time. The methodology involves...

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Dhara S, Prabhat P, Misra NL. Direct Compositional Characterization of (U,Th)O2 Powders, Microspheres, and Pellets Using TXRF. Anal Chem. 2015;87(20):10262-7doi: 10.1021/acs.analchem.5b01824.
Dhara, S., Prabhat, P., & Misra, N. L. (2015). Direct Compositional Characterization of (U,Th)O2 Powders, Microspheres, and Pellets Using TXRF. Analytical chemistry, 87(20), 10262-7. https://doi.org/10.1021/acs.analchem.5b01824
Dhara, Sangita, et al. "Direct Compositional Characterization of (U,Th)O2 Powders, Microspheres, and Pellets Using TXRF." Analytical chemistry vol. 87,20 (2015): 10262-7. doi: https://doi.org/10.1021/acs.analchem.5b01824
Dhara S, Prabhat P, Misra NL. Direct Compositional Characterization of (U,Th)O2 Powders, Microspheres, and Pellets Using TXRF. Anal Chem. 2015 Oct 20;87(20):10262-7. doi: 10.1021/acs.analchem.5b01824. Epub 2015 Oct 05. PMID: 26403807.
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Micro-tensile bond strength of different adhesive systems on sound dentin and resin-based composite: An in-vitro study.

Journal of conservative dentistry : JCD

Mallick R, Sarangi P, Mohanty S, Behera S, Nanda S, Satapathy SK.
PMID: 26430301
J Conserv Dent. 2015 Sep-Oct;18(5):379-83. doi: 10.4103/0972-0707.164036.

AIM: To analyze the difference in the micro-tensile bond strength of specimens made with two different adhesive systems and compare them with two homogenous substrates.MATERIALS AND METHODS: Sixty permanent mandibular molars were mounted in acrylic blocks and sectioned with...

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Mallick R, Sarangi P, Mohanty S, et al. Micro-tensile bond strength of different adhesive systems on sound dentin and resin-based composite: An in-vitro study. J Conserv Dent. 2015;18(5):379-83doi: 10.4103/0972-0707.164036.
Mallick, R., Sarangi, P., Mohanty, S., Behera, S., Nanda, S., & Satapathy, S. K. (2015). Micro-tensile bond strength of different adhesive systems on sound dentin and resin-based composite: An in-vitro study. Journal of conservative dentistry : JCD, 18(5), 379-83. https://doi.org/10.4103/0972-0707.164036
Mallick, Rashmirekha, et al. "Micro-tensile bond strength of different adhesive systems on sound dentin and resin-based composite: An in-vitro study." Journal of conservative dentistry : JCD vol. 18,5 (2015): 379-83. doi: https://doi.org/10.4103/0972-0707.164036
Mallick R, Sarangi P, Mohanty S, Behera S, Nanda S, Satapathy SK. Micro-tensile bond strength of different adhesive systems on sound dentin and resin-based composite: An in-vitro study. J Conserv Dent. 2015 Sep-Oct;18(5):379-83. doi: 10.4103/0972-0707.164036. PMID: 26430301; PMCID: PMC4578182.
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Is CH3NH3PbI3 Polar?.

The journal of physical chemistry letters

G S, Mahale P, Kore BP, Mukherjee S, Pavan MS, De C, Ghara S, Sundaresan A, Pandey A, Guru Row TN, Sarma DD.
PMID: 27282976
J Phys Chem Lett. 2016 Jul 07;7(13):2412-9. doi: 10.1021/acs.jpclett.6b00803. Epub 2016 Jun 15.

In view of the continued controversy concerning the polar/nonpolar nature of the hybrid perovskite system, CH3NH3PbI3, we report the first investigation of a time-resolved pump-probe measurement of the second harmonic generation efficiency as well as using its more traditional...

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G S, Mahale P, Kore BP, et al. Is CH3NH3PbI3 Polar?. J Phys Chem Lett. 2016;7(13):2412-9doi: 10.1021/acs.jpclett.6b00803.
G, S., Mahale, P., Kore, B. P., Mukherjee, S., Pavan, M. S., De, C., Ghara, S., Sundaresan, A., Pandey, A., Guru Row, T. N., & Sarma, D. D. (2016). Is CH3NH3PbI3 Polar?. The journal of physical chemistry letters, 7(13), 2412-9. https://doi.org/10.1021/acs.jpclett.6b00803
G, Sharada, et al. "Is CH3NH3PbI3 Polar?." The journal of physical chemistry letters vol. 7,13 (2016): 2412-9. doi: https://doi.org/10.1021/acs.jpclett.6b00803
G S, Mahale P, Kore BP, Mukherjee S, Pavan MS, De C, Ghara S, Sundaresan A, Pandey A, Guru Row TN, Sarma DD. Is CH3NH3PbI3 Polar?. J Phys Chem Lett. 2016 Jul 07;7(13):2412-9. doi: 10.1021/acs.jpclett.6b00803. Epub 2016 Jun 15. PMID: 27282976.
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Notch Signaling in Neuroendocrine Tumors.

Frontiers in oncology

Crabtree JS, Singleton CS, Miele L.
PMID: 27148486
Front Oncol. 2016 Apr 14;6:94. doi: 10.3389/fonc.2016.00094. eCollection 2016.

Carcinoids and neuroendocrine tumors (NETs) are a heterogeneous group of tumors that arise from the neuroendocrine cells of the GI tract, endocrine pancreas, and the respiratory system. NETs remain significantly understudied with respect to molecular mechanisms of pathogenesis, particularly...

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Crabtree JS, Singleton CS, Miele L. Notch Signaling in Neuroendocrine Tumors. Front Oncol. 2016;6:94doi: 10.3389/fonc.2016.00094.
Crabtree, J. S., Singleton, C. S., & Miele, L. (2016). Notch Signaling in Neuroendocrine Tumors. Frontiers in oncology, 694. https://doi.org/10.3389/fonc.2016.00094
Crabtree, Judy S, et al. "Notch Signaling in Neuroendocrine Tumors." Frontiers in oncology vol. 6 (2016): 94. doi: https://doi.org/10.3389/fonc.2016.00094
Crabtree JS, Singleton CS, Miele L. Notch Signaling in Neuroendocrine Tumors. Front Oncol. 2016 Apr 14;6:94. doi: 10.3389/fonc.2016.00094. eCollection 2016. PMID: 27148486; PMCID: PMC4830836.
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Enhanced Carbon Dioxide Capture from Landfill Gas Using Bifunctionalized Benzimidazole-Linked Polymers.

ACS applied materials & interfaces

Islamoglu T, Behera S, Kahveci Z, Tessema TD, Jena P, El-Kaderi HM.
PMID: 27228220
ACS Appl Mater Interfaces. 2016 Jun 15;8(23):14648-55. doi: 10.1021/acsami.6b05326. Epub 2016 Jun 03.

Tuning the binding affinity of small gases and their selective uptake by porous adsorbents are vital for effective CO2 removal from gas mixtures for environmental protection and fuel upgrading. In this study, an amine-functionalized benzimidazole-linked polymer (BILP-6-NH2) was synthesized...

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Islamoglu T, Behera S, Kahveci Z, et al. Enhanced Carbon Dioxide Capture from Landfill Gas Using Bifunctionalized Benzimidazole-Linked Polymers. ACS Appl Mater Interfaces. 2016;8(23):14648-55doi: 10.1021/acsami.6b05326.
Islamoglu, T., Behera, S., Kahveci, Z., Tessema, T. D., Jena, P., & El-Kaderi, H. M. (2016). Enhanced Carbon Dioxide Capture from Landfill Gas Using Bifunctionalized Benzimidazole-Linked Polymers. ACS applied materials & interfaces, 8(23), 14648-55. https://doi.org/10.1021/acsami.6b05326
Islamoglu, Timur, et al. "Enhanced Carbon Dioxide Capture from Landfill Gas Using Bifunctionalized Benzimidazole-Linked Polymers." ACS applied materials & interfaces vol. 8,23 (2016): 14648-55. doi: https://doi.org/10.1021/acsami.6b05326
Islamoglu T, Behera S, Kahveci Z, Tessema TD, Jena P, El-Kaderi HM. Enhanced Carbon Dioxide Capture from Landfill Gas Using Bifunctionalized Benzimidazole-Linked Polymers. ACS Appl Mater Interfaces. 2016 Jun 15;8(23):14648-55. doi: 10.1021/acsami.6b05326. Epub 2016 Jun 03. PMID: 27228220.
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Efficacy of cardiac magnetic resonance for the qualitative diagnosis of blunt cardiac injury.

Acute medicine & surgery

Kaneda K, Yamamura H, Yamamoto T, Matsumoto K, Ehara S, Mizobata Y.
PMID: 29123751
Acute Med Surg. 2015 Jun 15;3(1):53-56. doi: 10.1002/ams2.122. eCollection 2016 Jan.

CASE: A 47-year-old man was admitted after a car collision in shock with cardiac tamponade. After his circulation was stabilized by pericardial drainage, we treated him conservatively. Abnormal laboratory data and initial electrocardiogram (ECG) were suggestive of myocardial injury....

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Kaneda K, Yamamura H, Yamamoto T, et al. Efficacy of cardiac magnetic resonance for the qualitative diagnosis of blunt cardiac injury. Acute Med Surg. 2015;3(1):53-56doi: 10.1002/ams2.122.
Kaneda, K., Yamamura, H., Yamamoto, T., Matsumoto, K., Ehara, S., & Mizobata, Y. (2016). Efficacy of cardiac magnetic resonance for the qualitative diagnosis of blunt cardiac injury. Acute medicine & surgery, 3(1), 53-56. https://doi.org/10.1002/ams2.122
Kaneda, Kazuhisa, et al. "Efficacy of cardiac magnetic resonance for the qualitative diagnosis of blunt cardiac injury." Acute medicine & surgery vol. 3,1 (2016): 53-56. doi: https://doi.org/10.1002/ams2.122
Kaneda K, Yamamura H, Yamamoto T, Matsumoto K, Ehara S, Mizobata Y. Efficacy of cardiac magnetic resonance for the qualitative diagnosis of blunt cardiac injury. Acute Med Surg. 2015 Jun 15;3(1):53-56. doi: 10.1002/ams2.122. eCollection 2016 Jan. PMID: 29123751; PMCID: PMC5667227.
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Europium doping induced symmetry deviation and its impact on the second harmonic generation of doped ZnO nanowires.

Nanotechnology

Dhara S, Imakita K, Mizuhata M, Fujii M.
PMID: 24806742
Nanotechnology. 2014 Jun 06;25(22):225202. doi: 10.1088/0957-4484/25/22/225202. Epub 2014 May 08.

In this work, we investigated the effects of europium doping on the second harmonic generation (SHG) of ZnO nanowires (NWs). A non-monotonic enhancement in the SHG is observed with the increase of the europium concentration. Maximum SHG is observed...

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Dhara S, Imakita K, Mizuhata M, et al. Europium doping induced symmetry deviation and its impact on the second harmonic generation of doped ZnO nanowires. Nanotechnology. 2014;25(22):225202doi: 10.1088/0957-4484/25/22/225202.
Dhara, S., Imakita, K., Mizuhata, M., & Fujii, M. (2014). Europium doping induced symmetry deviation and its impact on the second harmonic generation of doped ZnO nanowires. Nanotechnology, 25(22), 225202. https://doi.org/10.1088/0957-4484/25/22/225202
Dhara, Soumen, et al. "Europium doping induced symmetry deviation and its impact on the second harmonic generation of doped ZnO nanowires." Nanotechnology vol. 25,22 (2014): 225202. doi: https://doi.org/10.1088/0957-4484/25/22/225202
Dhara S, Imakita K, Mizuhata M, Fujii M. Europium doping induced symmetry deviation and its impact on the second harmonic generation of doped ZnO nanowires. Nanotechnology. 2014 Jun 06;25(22):225202. doi: 10.1088/0957-4484/25/22/225202. Epub 2014 May 08. PMID: 24806742.
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Experimental studies on the rheology of cubic blue phases.

Soft matter

Sahoo R, Chojnowska O, Dabrowski R, Dhara S.
PMID: 26583806
Soft Matter. 2016 Jan 28;12(4):1324-9. doi: 10.1039/c5sm02299a.

We report detailed experimental studies on the rheology of cubic blue phases. We observe several flow regimes within each blue phase from rheomicroscopy and small angle light scattering experiments. Both the cubic blue phases exhibit solid-like response while the...

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Sahoo R, Chojnowska O, Dabrowski R, et al. Experimental studies on the rheology of cubic blue phases. Soft Matter. 2016;12(4):1324-9doi: 10.1039/c5sm02299a.
Sahoo, R., Chojnowska, O., Dabrowski, R., & Dhara, S. (2016). Experimental studies on the rheology of cubic blue phases. Soft matter, 12(4), 1324-9. https://doi.org/10.1039/c5sm02299a
Sahoo, Rasmita, et al. "Experimental studies on the rheology of cubic blue phases." Soft matter vol. 12,4 (2016): 1324-9. doi: https://doi.org/10.1039/c5sm02299a
Sahoo R, Chojnowska O, Dabrowski R, Dhara S. Experimental studies on the rheology of cubic blue phases. Soft Matter. 2016 Jan 28;12(4):1324-9. doi: 10.1039/c5sm02299a. PMID: 26583806.
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Simultaneous and stereospecific analysis of warfarin oxidative metabolism using 2D LC/Q-TOF.

Bioanalysis

Joseph S, Subramanian M, Khera S.
PMID: 26105112
Bioanalysis. 2015 Sep;7(18):2297-2309. doi: 10.4155/bio.15.119. Epub 2015 Jun 24.

BACKGROUND: Warfarin is a widely used racemic anticoagulant with narrow therapeutic range and wide interindividual response to treatment. This is due to the extensive and differential clearance of R- and S-warfarin with the involvement of several polymorphic CYP450 enzymes...

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Joseph S, Subramanian M, Khera S. Simultaneous and stereospecific analysis of warfarin oxidative metabolism using 2D LC/Q-TOF. Bioanalysis. 2015;7(18):2297-2309doi: 10.4155/bio.15.119.
Joseph, S., Subramanian, M., & Khera, S. (2015). Simultaneous and stereospecific analysis of warfarin oxidative metabolism using 2D LC/Q-TOF. Bioanalysis, 7(18), 2297-2309. https://doi.org/10.4155/bio.15.119
Joseph, Siji, et al. "Simultaneous and stereospecific analysis of warfarin oxidative metabolism using 2D LC/Q-TOF." Bioanalysis vol. 7,18 (2015): 2297-2309. doi: https://doi.org/10.4155/bio.15.119
Joseph S, Subramanian M, Khera S. Simultaneous and stereospecific analysis of warfarin oxidative metabolism using 2D LC/Q-TOF. Bioanalysis. 2015 Sep;7(18):2297-2309. doi: 10.4155/bio.15.119. Epub 2015 Jun 24. PMID: 26105112.
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The Presence of Select Tau Species in Human Peripheral Tissues and Their Relation to Alzheimer's Disease.

Journal of Alzheimer's disease : JAD

Dugger BN, Whiteside CM, Maarouf CL, Walker DG, Beach TG, Sue LI, Garcia A, Dunckley T, Meechoovet B, Reiman EM, Roher AE.
PMID: 27716678
J Alzheimers Dis. 2016 Oct 04;54(3):1249. doi: 10.3233/JAD-169007.

No abstract available.

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Dugger BN, Whiteside CM, Maarouf CL, et al. The Presence of Select Tau Species in Human Peripheral Tissues and Their Relation to Alzheimer's Disease. J Alzheimers Dis. 2016;54(3):1249doi: 10.3233/JAD-169007.
Dugger, B. N., Whiteside, C. M., Maarouf, C. L., Walker, D. G., Beach, T. G., Sue, L. I., Garcia, A., Dunckley, T., Meechoovet, B., Reiman, E. M., & Roher, A. E. (2016). The Presence of Select Tau Species in Human Peripheral Tissues and Their Relation to Alzheimer's Disease. Journal of Alzheimer's disease : JAD, 54(3), 1249. https://doi.org/10.3233/JAD-169007
Dugger, Brittany N, et al. "The Presence of Select Tau Species in Human Peripheral Tissues and Their Relation to Alzheimer's Disease." Journal of Alzheimer's disease : JAD vol. 54,3 (2016): 1249. doi: https://doi.org/10.3233/JAD-169007
Dugger BN, Whiteside CM, Maarouf CL, Walker DG, Beach TG, Sue LI, Garcia A, Dunckley T, Meechoovet B, Reiman EM, Roher AE. The Presence of Select Tau Species in Human Peripheral Tissues and Their Relation to Alzheimer's Disease. J Alzheimers Dis. 2016 Oct 04;54(3):1249. doi: 10.3233/JAD-169007. PMID: 27716678.
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Design and fabrication of woodpile photonic structures through phase SLM-based interference lithography for omnidirectional optical filters.

Optics letters

Behera S, Joseph J.
PMID: 28957296
Opt Lett. 2017 Jul 01;42(13):2607-2610. doi: 10.1364/OL.42.002607.

In this Letter, we report a large-area and single-step optical fabrication technique based on phase engineering interference lithography that is scalable and reconfigurable for the realization of submicrometer scale periodic face-centered cubic inverse woodpile photonic structures. The realized inverse...

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Behera S, Joseph J. Design and fabrication of woodpile photonic structures through phase SLM-based interference lithography for omnidirectional optical filters. Opt Lett. 2017;42(13):2607-2610doi: 10.1364/OL.42.002607.
Behera, S., & Joseph, J. (2017). Design and fabrication of woodpile photonic structures through phase SLM-based interference lithography for omnidirectional optical filters. Optics letters, 42(13), 2607-2610. https://doi.org/10.1364/OL.42.002607
Behera, Saraswati, and Joseph, Joby. "Design and fabrication of woodpile photonic structures through phase SLM-based interference lithography for omnidirectional optical filters." Optics letters vol. 42,13 (2017): 2607-2610. doi: https://doi.org/10.1364/OL.42.002607
Behera S, Joseph J. Design and fabrication of woodpile photonic structures through phase SLM-based interference lithography for omnidirectional optical filters. Opt Lett. 2017 Jul 01;42(13):2607-2610. doi: 10.1364/OL.42.002607. PMID: 28957296.
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Showing 1 to 12 of 543 entries