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Defining near-term to long-term research opportunities to advance metrics, models, and methods for smart and sustainable manufacturing

Computer and Information Science and Engineering Minority-Serving Institutions Research Expansion Program AND Program Evaluation

Haapala KR, Raman AS, Raoufi K.
GSID: iQTrqoV0JcsJ
AS Raman, KR Haapala, K Raoufi… - … systems, 2020 - ncbi.nlm.nih.gov

Over the past century, research has focused on continuously improving the performance of manufacturing processes and systems—often measured in terms of cost, quality, productivity, and material and energy efficiency. With the advent of smart manufacturing technologies—better production equipment, sensing...

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Raman, A. S., Haapala, K. R., Raoufi, K., Linke, B. S., Bernstein, W. Z., & Morris, K. C. (2020). Defining near-term to long-term research opportunities to advance metrics, models, and methods for smart and sustainable manufacturing. Smart and sustainable manufacturing systems, 4(2).
Raman, Arvind Shankar, et al. "Defining near-term to long-term research opportunities to advance metrics, models, and methods for smart and sustainable manufacturing." Smart and sustainable manufacturing systems 4.2 (2020).
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The binding structure and affinity of photodamaged duplex DNA with members of the photolyase/cryptochrome family: A computational study.

Biophysics and physicobiology

Sato R, Harada R, Shigeta Y.
PMID: 29450111
Biophys Physicobiol. 2018 Jan 20;15:18-27. doi: 10.2142/biophysico.15.0_18. eCollection 2018.

Photolyases (PHRs) and cryptochromes (CRYs) belong to the same family known as blue-light photoreceptors. Although their amino acid sequences and corresponding structures are similar to each other, they exert different functions. PHRs function as an enzyme to repair UV-induced...

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Sato R, Harada R, Shigeta Y. The binding structure and affinity of photodamaged duplex DNA with members of the photolyase/cryptochrome family: A computational study. Biophys Physicobiol. 2018;15:18-27doi: 10.2142/biophysico.15.0_18.
Sato, R., Harada, R., & Shigeta, Y. (2018). The binding structure and affinity of photodamaged duplex DNA with members of the photolyase/cryptochrome family: A computational study. Biophysics and physicobiology, 1518-27. https://doi.org/10.2142/biophysico.15.0_18
Sato, Ryuma, et al. "The binding structure and affinity of photodamaged duplex DNA with members of the photolyase/cryptochrome family: A computational study." Biophysics and physicobiology vol. 15 (2018): 18-27. doi: https://doi.org/10.2142/biophysico.15.0_18
Sato R, Harada R, Shigeta Y. The binding structure and affinity of photodamaged duplex DNA with members of the photolyase/cryptochrome family: A computational study. Biophys Physicobiol. 2018 Jan 20;15:18-27. doi: 10.2142/biophysico.15.0_18. eCollection 2018. PMID: 29450111; PMCID: PMC5812317.
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The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.

Cell host & microbe

Kostic AD, Gevers D, Siljander H, Vatanen T, Hyötyläinen T, Hämäläinen AM, Peet A, Tillmann V, Pöhö P, Mattila I, Lähdesmäki H, Franzosa EA, Vaarala O, de Goffau M, Harmsen H, Ilonen J, Virtanen SM, Clish CB, Orešič M, Huttenhower C, Knip M, Xavier RJ.
PMID: 25662751
Cell Host Microbe. 2015 Feb 11;17(2):260-73. doi: 10.1016/j.chom.2015.01.001. Epub 2015 Feb 05.

Colonization of the fetal and infant gut microbiome results in dynamic changes in diversity, which can impact disease susceptibility. To examine the relationship between human gut microbiome dynamics throughout infancy and type 1 diabetes (T1D), we examined a cohort...

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Kostic AD, Gevers D, Siljander H, et al. The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host Microbe. 2015;17(2):260-73doi: 10.1016/j.chom.2015.01.001.
Kostic, A. D., Gevers, D., Siljander, H., Vatanen, T., Hyötyläinen, T., Hämäläinen, A. M., Peet, A., Tillmann, V., Pöhö, P., Mattila, I., Lähdesmäki, H., Franzosa, E. A., Vaarala, O., de Goffau, M., Harmsen, H., Ilonen, J., Virtanen, S. M., Clish, C. B., Orešič, M., Huttenhower, C., Knip, M., & Xavier, R. J. (2015). The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell host & microbe, 17(2), 260-73. https://doi.org/10.1016/j.chom.2015.01.001
Kostic, Aleksandar D, et al. "The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes." Cell host & microbe vol. 17,2 (2015): 260-73. doi: https://doi.org/10.1016/j.chom.2015.01.001
Kostic AD, Gevers D, Siljander H, Vatanen T, Hyötyläinen T, Hämäläinen AM, Peet A, Tillmann V, Pöhö P, Mattila I, Lähdesmäki H, Franzosa EA, Vaarala O, de Goffau M, Harmsen H, Ilonen J, Virtanen SM, Clish CB, Orešič M, Huttenhower C, Knip M, Xavier RJ. The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host Microbe. 2015 Feb 11;17(2):260-73. doi: 10.1016/j.chom.2015.01.001. Epub 2015 Feb 05. PMID: 25662751; PMCID: PMC4689191.
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Guidelines: The do's, don'ts and don't knows of direct observation of clinical skills in medical education.

Perspectives on medical education

Kogan JR, Hatala R, Hauer KE, Holmboe E.
PMID: 28956293
Perspect Med Educ. 2017 Oct;6(5):286-305. doi: 10.1007/s40037-017-0376-7.

INTRODUCTION: Direct observation of clinical skills is a key assessment strategy in competency-based medical education. The guidelines presented in this paper synthesize the literature on direct observation of clinical skills. The goal is to provide a practical list of...

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Kogan JR, Hatala R, Hauer KE, et al. Guidelines: The do's, don'ts and don't knows of direct observation of clinical skills in medical education. Perspect Med Educ. 2017;6(5):286-305doi: 10.1007/s40037-017-0376-7.
Kogan, J. R., Hatala, R., Hauer, K. E., & Holmboe, E. (2017). Guidelines: The do's, don'ts and don't knows of direct observation of clinical skills in medical education. Perspectives on medical education, 6(5), 286-305. https://doi.org/10.1007/s40037-017-0376-7
Kogan, Jennifer R, et al. "Guidelines: The do's, don'ts and don't knows of direct observation of clinical skills in medical education." Perspectives on medical education vol. 6,5 (2017): 286-305. doi: https://doi.org/10.1007/s40037-017-0376-7
Kogan JR, Hatala R, Hauer KE, Holmboe E. Guidelines: The do's, don'ts and don't knows of direct observation of clinical skills in medical education. Perspect Med Educ. 2017 Oct;6(5):286-305. doi: 10.1007/s40037-017-0376-7. PMID: 28956293; PMCID: PMC5630537.
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Perforation of jejunum induced by the deployment of a temporary prophylactic pancreatic stent in the patient with peritonitis carcinomatosa.

Clinical journal of gastroenterology

Harada R, Kawamoto H, Fukatsu H, Kato H, Hirao K, Kurihara N, Mizuno O, Ogawa T, Ishida E, Yamamoto K.
PMID: 26193468
Clin J Gastroenterol. 2008 Jun;1(2):80-82. doi: 10.1007/s12328-008-0013-4. Epub 2008 Jun 11.

A great deal of medical literature describes the efficacy and safety of the prophylactic pancreatic stent in reducing the incidence of post-endoscopic retrograde cholangiopancreatography (post-ERCP) pancreatitis. At the moment, no serious complication due to the migration of this stent...

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Harada R, Kawamoto H, Fukatsu H, et al. Perforation of jejunum induced by the deployment of a temporary prophylactic pancreatic stent in the patient with peritonitis carcinomatosa. Clin J Gastroenterol. 2008;1(2):80-82doi: 10.1007/s12328-008-0013-4.
Harada, R., Kawamoto, H., Fukatsu, H., Kato, H., Hirao, K., Kurihara, N., Mizuno, O., Ogawa, T., Ishida, E., & Yamamoto, K. (2008). Perforation of jejunum induced by the deployment of a temporary prophylactic pancreatic stent in the patient with peritonitis carcinomatosa. Clinical journal of gastroenterology, 1(2), 80-82. https://doi.org/10.1007/s12328-008-0013-4
Harada, Ryo, et al. "Perforation of jejunum induced by the deployment of a temporary prophylactic pancreatic stent in the patient with peritonitis carcinomatosa." Clinical journal of gastroenterology vol. 1,2 (2008): 80-82. doi: https://doi.org/10.1007/s12328-008-0013-4
Harada R, Kawamoto H, Fukatsu H, Kato H, Hirao K, Kurihara N, Mizuno O, Ogawa T, Ishida E, Yamamoto K. Perforation of jejunum induced by the deployment of a temporary prophylactic pancreatic stent in the patient with peritonitis carcinomatosa. Clin J Gastroenterol. 2008 Jun;1(2):80-82. doi: 10.1007/s12328-008-0013-4. Epub 2008 Jun 11. PMID: 26193468.
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Theoretical analyses on a flipping mechanism of UV-induced DNA damage.

Biophysics and physicobiology

Sato R, Harada R, Shigeta Y.
PMID: 28409083
Biophys Physicobiol. 2016 Dec 13;13:311-319. doi: 10.2142/biophysico.13.0_311. eCollection 2016.

As for UV-induced DNA damage, which may induce skin cancer in animals and growth inhibition in plants, there are two types of photoproducts, namely

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Sato R, Harada R, Shigeta Y. Theoretical analyses on a flipping mechanism of UV-induced DNA damage. Biophys Physicobiol. 2016;13:311-319doi: 10.2142/biophysico.13.0_311.
Sato, R., Harada, R., & Shigeta, Y. (2016). Theoretical analyses on a flipping mechanism of UV-induced DNA damage. Biophysics and physicobiology, 13311-319. https://doi.org/10.2142/biophysico.13.0_311
Sato, Ryuma, et al. "Theoretical analyses on a flipping mechanism of UV-induced DNA damage." Biophysics and physicobiology vol. 13 (2016): 311-319. doi: https://doi.org/10.2142/biophysico.13.0_311
Sato R, Harada R, Shigeta Y. Theoretical analyses on a flipping mechanism of UV-induced DNA damage. Biophys Physicobiol. 2016 Dec 13;13:311-319. doi: 10.2142/biophysico.13.0_311. eCollection 2016. PMID: 28409083; PMCID: PMC5283176.
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Apolipoprotein E genotype is not linked to locally recurrent hormone-refractory prostate cancer.

Prostate cancer and prostatic diseases

Haapala K, Lehtimäki T, Ilveskoski E, Koivisto PA, Haapala K.
PMID: 12497107
Prostate Cancer Prostatic Dis. 2000 Aug;3(2):107-109. doi: 10.1038/sj.pcan.4500405.

Mechanisms of prostate cancer recurrence during androgen deprivation are poorly understood. Recently, the putative role of apolipoprotein E varepsilon 4 allele in the aetiology of prostate cancer was raised. To investigate the hypothesis that varepsilon 4 allele of apolipoprotein...

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Haapala K, Lehtimäki T, Ilveskoski E, et al. Apolipoprotein E genotype is not linked to locally recurrent hormone-refractory prostate cancer. Prostate Cancer Prostatic Dis. 2000;3(2):107-109doi: 10.1038/sj.pcan.4500405.
Haapala, K., Lehtimäki, T., Ilveskoski, E., Koivisto, P. A., & Haapala, K. (2000). Apolipoprotein E genotype is not linked to locally recurrent hormone-refractory prostate cancer. Prostate cancer and prostatic diseases, 3(2), 107-109. https://doi.org/10.1038/sj.pcan.4500405
Haapala, K, et al. "Apolipoprotein E genotype is not linked to locally recurrent hormone-refractory prostate cancer." Prostate cancer and prostatic diseases vol. 3,2 (2000): 107-109. doi: https://doi.org/10.1038/sj.pcan.4500405
Haapala K, Lehtimäki T, Ilveskoski E, Koivisto PA, Haapala K. Apolipoprotein E genotype is not linked to locally recurrent hormone-refractory prostate cancer. Prostate Cancer Prostatic Dis. 2000 Aug;3(2):107-109. doi: 10.1038/sj.pcan.4500405. PMID: 12497107.
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Medical women in academia: silenced by the system.

CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne

Hatala R.
PMID: 12615743
CMAJ. 2003 Mar 04;168(5):542; author reply 544.

No abstract available.

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Hatala R. Medical women in academia: silenced by the system. CMAJ. 2003;168(5):542; author reply 544
Hatala, R. (2003). Medical women in academia: silenced by the system. CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne, 168(5), 542; author reply 544.
Hatala, Rose. "Medical women in academia: silenced by the system." CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne vol. 168,5 (2003): 542; author reply 544.
Hatala R. Medical women in academia: silenced by the system. CMAJ. 2003 Mar 04;168(5):542; author reply 544. PMID: 12615743; PMCID: PMC149238.
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Experimental investigation of cutoff phenomena in nonlinear photonic crystal fibers.

Optics letters

Folkenberg JR, Mortensen NA, Hansen KP, Hansen TP, Simonsen HR, Jakobsen C.
PMID: 14587763
Opt Lett. 2003 Oct 15;28(20):1882-4. doi: 10.1364/ol.28.001882.

Modal cutoff is investigated experimentally in a series of high-quality nonlinear photonic crystal fibers. We demonstrate a suitable measurement technique with which to determine the cutoff wavelength and verify the technique by inspecting the near field of the modes...

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Folkenberg JR, Mortensen NA, Hansen KP, et al. Experimental investigation of cutoff phenomena in nonlinear photonic crystal fibers. Opt Lett. 2003;28(20):1882-4doi: 10.1364/ol.28.001882.
Folkenberg, J. R., Mortensen, N. A., Hansen, K. P., Hansen, T. P., Simonsen, H. R., & Jakobsen, C. (2003). Experimental investigation of cutoff phenomena in nonlinear photonic crystal fibers. Optics letters, 28(20), 1882-4. https://doi.org/10.1364/ol.28.001882
Folkenberg, Jacob Riis, et al. "Experimental investigation of cutoff phenomena in nonlinear photonic crystal fibers." Optics letters vol. 28,20 (2003): 1882-4. doi: https://doi.org/10.1364/ol.28.001882
Folkenberg JR, Mortensen NA, Hansen KP, Hansen TP, Simonsen HR, Jakobsen C. Experimental investigation of cutoff phenomena in nonlinear photonic crystal fibers. Opt Lett. 2003 Oct 15;28(20):1882-4. doi: 10.1364/ol.28.001882. PMID: 14587763.
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Biomonitoring of the distribution of dust emissions by means of a new SEM/EDX technique.

Environmental science and pollution research international

Haapala H, Kikuchi R.
PMID: 19005832
Environ Sci Pollut Res Int. 2000;7(4):189-90. doi: 10.1007/BF02987345.

A new application of the Scanning Electron Microscope (SEM) equipped with an Energy Dispersive X-ray Microanalyzer (EDX) has been developed to study the distribution of airborne dust emissions. This technique makes it possible to identify the particles and measure...

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Haapala H, Kikuchi R. Biomonitoring of the distribution of dust emissions by means of a new SEM/EDX technique. Environ Sci Pollut Res Int. 2000;7(4):189-90doi: 10.1007/BF02987345.
Haapala, H., & Kikuchi, R. (2000). Biomonitoring of the distribution of dust emissions by means of a new SEM/EDX technique. Environmental science and pollution research international, 7(4), 189-90. https://doi.org/10.1007/BF02987345
Haapala, H, and Kikuchi, R. "Biomonitoring of the distribution of dust emissions by means of a new SEM/EDX technique." Environmental science and pollution research international vol. 7,4 (2000): 189-90. doi: https://doi.org/10.1007/BF02987345
Haapala H, Kikuchi R. Biomonitoring of the distribution of dust emissions by means of a new SEM/EDX technique. Environ Sci Pollut Res Int. 2000;7(4):189-90. doi: 10.1007/BF02987345. PMID: 19005832.
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Characterization of ultrashort optical pulse properties by amplitude-modulation-balanced heterodyne gating.

Optics letters

Benkler E, Telle HR, Weingarten K, Krainer L, Spühler G, Keller U.
PMID: 16092251
Opt Lett. 2005 Aug 01;30(15):2016-8. doi: 10.1364/ol.30.002016.

We present a general approach for the measurement of the properties of optical pulses by exploiting features of the optical carrier domain. We demonstrate the principle of a novel balanced detection scheme that avoids the difficulties associated with homodyne...

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Benkler E, Telle HR, Weingarten K, et al. Characterization of ultrashort optical pulse properties by amplitude-modulation-balanced heterodyne gating. Opt Lett. 2005;30(15):2016-8doi: 10.1364/ol.30.002016.
Benkler, E., Telle, H. R., Weingarten, K., Krainer, L., Spühler, G., & Keller, U. (2005). Characterization of ultrashort optical pulse properties by amplitude-modulation-balanced heterodyne gating. Optics letters, 30(15), 2016-8. https://doi.org/10.1364/ol.30.002016
Benkler, Erik, et al. "Characterization of ultrashort optical pulse properties by amplitude-modulation-balanced heterodyne gating." Optics letters vol. 30,15 (2005): 2016-8. doi: https://doi.org/10.1364/ol.30.002016
Benkler E, Telle HR, Weingarten K, Krainer L, Spühler G, Keller U. Characterization of ultrashort optical pulse properties by amplitude-modulation-balanced heterodyne gating. Opt Lett. 2005 Aug 01;30(15):2016-8. doi: 10.1364/ol.30.002016. PMID: 16092251.
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Atypical right diaphragmatic hernia (hernia of Morgagni), spigelian hernia and epigastric hernia in a patient with Williams syndrome: a case report.

Journal of medical case reports

Rashid F, Chaparala R, Ahmed J, Iftikhar SY.
PMID: 19128471
J Med Case Rep. 2009 Jan 07;3:7. doi: 10.1186/1752-1947-3-7.

INTRODUCTION: Williams syndrome is rare genetic disorder resulting in neurodevelopmental problems. Hernias of the foramen of Morgagni are rare diaphragmatic hernias and they mostly present on the right side, in the anterior mediastinum. They are usually asymptomatic and are...

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Rashid F, Chaparala R, Ahmed J, et al. Atypical right diaphragmatic hernia (hernia of Morgagni), spigelian hernia and epigastric hernia in a patient with Williams syndrome: a case report. J Med Case Rep. 2009;3:7doi: 10.1186/1752-1947-3-7.
Rashid, F., Chaparala, R., Ahmed, J., & Iftikhar, S. Y. (2009). Atypical right diaphragmatic hernia (hernia of Morgagni), spigelian hernia and epigastric hernia in a patient with Williams syndrome: a case report. Journal of medical case reports, 37. https://doi.org/10.1186/1752-1947-3-7
Rashid, Farhan, et al. "Atypical right diaphragmatic hernia (hernia of Morgagni), spigelian hernia and epigastric hernia in a patient with Williams syndrome: a case report." Journal of medical case reports vol. 3 (2009): 7. doi: https://doi.org/10.1186/1752-1947-3-7
Rashid F, Chaparala R, Ahmed J, Iftikhar SY. Atypical right diaphragmatic hernia (hernia of Morgagni), spigelian hernia and epigastric hernia in a patient with Williams syndrome: a case report. J Med Case Rep. 2009 Jan 07;3:7. doi: 10.1186/1752-1947-3-7. PMID: 19128471; PMCID: PMC2630954.
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Showing 1 to 12 of 271 entries