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AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana

pipeline programs

Hamada M.
GSID: RsIKDP6Pz_UJ
K Ishii, Y Kazama, T Hirano, M Hamada… - Genes & genetic …, 2016 - jstage.jst.go.jp

… In this study, we have developed a novel pipeline, AMAP (Automated Mutation Analysis Pipeline), for conducting a set of mutation analyses, mapping, removal of potential PCR duplicates, and detecting mutations using several programs. In AMAP, false positives are...

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Ishii, K., Kazama, Y., Hirano, T., Hamada, M., Ono, Y., Yamada, M., & Abe, T. (2016). AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana. Genes & genetic systems, 15-00078.
Ishii, Kotaro, et al. "AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana." Genes & genetic systems (2016): 15-00078.
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[Discussion. Experience in psychological conference].

Kangogaku zasshi

Yasuda C, Imano T, Watanuki K, Yamamoto N, Hamada I.
PMID: 4992129
Kangogaku Zasshi. 1970 Oct;34(10):18-31.

No abstract available.

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Yasuda C, Imano T, Watanuki K, et al. [Discussion. Experience in psychological conference]. Kangogaku Zasshi. 1970;34(10):18-31
Yasuda, C., Imano, T., Watanuki, K., Yamamoto, N., & Hamada, I. (1970). [Discussion. Experience in psychological conference]. Kangogaku zasshi, 34(10), 18-31.
Yasuda, C, et al. "[Discussion. Experience in psychological conference]." Kangogaku zasshi vol. 34,10 (1970): 18-31.
Yasuda C, Imano T, Watanuki K, Yamamoto N, Hamada I. [Discussion. Experience in psychological conference]. Kangogaku Zasshi. 1970 Oct;34(10):18-31. Japanese. PMID: 4992129.
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[Benign clear cell tumor of the lung: a case report].

Kyobu geka. The Japanese journal of thoracic surgery

Higashi T, Hamada N, Toyohira H, Maruko M, Tabata D, Nishimura M, Makino M, Nakamura T.
PMID: 3326959
Kyobu Geka. 1987 Dec;40(13):1090-3.

No abstract available.

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Higashi T, Hamada N, Toyohira H, et al. [Benign clear cell tumor of the lung: a case report]. Kyobu Geka. 1987;40(13):1090-3
Higashi, T., Hamada, N., Toyohira, H., Maruko, M., Tabata, D., Nishimura, M., Makino, M., & Nakamura, T. (1987). [Benign clear cell tumor of the lung: a case report]. Kyobu geka. The Japanese journal of thoracic surgery, 40(13), 1090-3.
Higashi, T, et al. "[Benign clear cell tumor of the lung: a case report]." Kyobu geka. The Japanese journal of thoracic surgery vol. 40,13 (1987): 1090-3.
Higashi T, Hamada N, Toyohira H, Maruko M, Tabata D, Nishimura M, Makino M, Nakamura T. [Benign clear cell tumor of the lung: a case report]. Kyobu Geka. 1987 Dec;40(13):1090-3. Japanese. PMID: 3326959.
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[Statistical investigation of crowns and bridges. 1. Single crown].

Hiroshima Daigaku shigaku zasshi. The Journal of Hiroshima University Dental Society

Yamada K, Ishida H, Tamamoto M, Hamada T.
PMID: 2134244
Hiroshima Daigaku Shigaku Zasshi. 1990 Jun;22(1):190-3.

No abstract available.

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Yamada K, Ishida H, Tamamoto M, et al. [Statistical investigation of crowns and bridges. 1. Single crown]. Hiroshima Daigaku Shigaku Zasshi. 1990;22(1):190-3
Yamada, K., Ishida, H., Tamamoto, M., & Hamada, T. (1990). [Statistical investigation of crowns and bridges. 1. Single crown]. Hiroshima Daigaku shigaku zasshi. The Journal of Hiroshima University Dental Society, 22(1), 190-3.
Yamada, K, et al. "[Statistical investigation of crowns and bridges. 1. Single crown]." Hiroshima Daigaku shigaku zasshi. The Journal of Hiroshima University Dental Society vol. 22,1 (1990): 190-3.
Yamada K, Ishida H, Tamamoto M, Hamada T. [Statistical investigation of crowns and bridges. 1. Single crown]. Hiroshima Daigaku Shigaku Zasshi. 1990 Jun;22(1):190-3. Japanese. PMID: 2134244.
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[Round table discussion: what will enhance nursing care technics. Methods and practice].

[Kango] Japanese journal of nursing

Takahashi S, Noguchi M, Yokokura H, Hayashi S, Yamada T, Takeda Y.
PMID: 5193213
Kango. 1969 Apr;21(4):10-22.

No abstract available.

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Takahashi S, Noguchi M, Yokokura H, et al. [Round table discussion: what will enhance nursing care technics. Methods and practice]. Kango. 1969;21(4):10-22
Takahashi, S., Noguchi, M., Yokokura, H., Hayashi, S., Yamada, T., & Takeda, Y. (1969). [Round table discussion: what will enhance nursing care technics. Methods and practice]. [Kango] Japanese journal of nursing, 21(4), 10-22.
Takahashi, S, et al. "[Round table discussion: what will enhance nursing care technics. Methods and practice]." [Kango] Japanese journal of nursing vol. 21,4 (1969): 10-22.
Takahashi S, Noguchi M, Yokokura H, Hayashi S, Yamada T, Takeda Y. [Round table discussion: what will enhance nursing care technics. Methods and practice]. Kango. 1969 Apr;21(4):10-22. Japanese. PMID: 5193213.
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Rotator cuff tears in the patient with paraplegia.

Journal of shoulder and elbow surgery

Hanada K, Fukuda H, Hamada K, Nakajima T.
PMID: 22971671
J Shoulder Elbow Surg. 1993 Mar;2(2):64-9. doi: 10.1016/1058-2746(93)90002-X. Epub 2009 Feb 25.

Shoulder problems are common in patients with paraplegia because of long-term weight bearing that occurs when crutches or wheelchairs are used and when transfers are done. Two moderate and two large rotator cuff tears in three patients with paraplegia...

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Hanada K, Fukuda H, Hamada K, et al. Rotator cuff tears in the patient with paraplegia. J Shoulder Elbow Surg. 2009;2(2):64-9doi: 10.1016/1058-2746(93)90002-X.
Hanada, K., Fukuda, H., Hamada, K., & Nakajima, T. (1993). Rotator cuff tears in the patient with paraplegia. Journal of shoulder and elbow surgery, 2(2), 64-9. https://doi.org/10.1016/1058-2746(93)90002-X
Hanada, K, et al. "Rotator cuff tears in the patient with paraplegia." Journal of shoulder and elbow surgery vol. 2,2 (1993): 64-9. doi: https://doi.org/10.1016/1058-2746(93)90002-X
Hanada K, Fukuda H, Hamada K, Nakajima T. Rotator cuff tears in the patient with paraplegia. J Shoulder Elbow Surg. 1993 Mar;2(2):64-9. doi: 10.1016/1058-2746(93)90002-X. Epub 2009 Feb 25. PMID: 22971671.
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Effect of sapphire nitridation and group-III source flow rate ratio on In-incorporation into InGaN grown by metalorganic vapor phase epitaxy.

Journal of nanoscience and nanotechnology

Choi JH, Shojiki K, Tanikawa T, Hanada T, Katayama R, Matsuoka T.
PMID: 25936067
J Nanosci Nanotechnol. 2014 Aug;14(8):6112-5. doi: 10.1166/jnn.2014.8306.

In-composition of N-polar InGaN films on the sapphire substrate with the surface nitridation was investigated. By varying the ratio of the group-III source flow rate from 0.7 to 0.95, the In-composition and the surface morphologies of InGaN films were...

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Choi JH, Shojiki K, Tanikawa T, et al. Effect of sapphire nitridation and group-III source flow rate ratio on In-incorporation into InGaN grown by metalorganic vapor phase epitaxy. J Nanosci Nanotechnol. 2014;14(8):6112-5doi: 10.1166/jnn.2014.8306.
Choi, J. H., Shojiki, K., Tanikawa, T., Hanada, T., Katayama, R., & Matsuoka, T. (2014). Effect of sapphire nitridation and group-III source flow rate ratio on In-incorporation into InGaN grown by metalorganic vapor phase epitaxy. Journal of nanoscience and nanotechnology, 14(8), 6112-5. https://doi.org/10.1166/jnn.2014.8306
Choi, J H, et al. "Effect of sapphire nitridation and group-III source flow rate ratio on In-incorporation into InGaN grown by metalorganic vapor phase epitaxy." Journal of nanoscience and nanotechnology vol. 14,8 (2014): 6112-5. doi: https://doi.org/10.1166/jnn.2014.8306
Choi JH, Shojiki K, Tanikawa T, Hanada T, Katayama R, Matsuoka T. Effect of sapphire nitridation and group-III source flow rate ratio on In-incorporation into InGaN grown by metalorganic vapor phase epitaxy. J Nanosci Nanotechnol. 2014 Aug;14(8):6112-5. doi: 10.1166/jnn.2014.8306. PMID: 25936067.
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A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report.

Respiratory medicine case reports

Mikumo H, Hamada N, Harada E, Yanagihara T, Ogata S, Yabuuchi H, Ijichi K, Takayama K, Nakanishi Y.
PMID: 28443233
Respir Med Case Rep. 2017 Apr 08;21:89-92. doi: 10.1016/j.rmcr.2017.03.023. eCollection 2017.

A 48-year-old man was admitted for evaluation of abnormal shadows on chest radiograph. Chest computed tomography (CT) showed cysts, nodules, and cervical and axillary lymphadenopathies. Elevated serum levels of IgG4 and interleukin (IL)-6 suggested IgG4-related disease (IgG4-RD) or multicentric...

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Mikumo H, Hamada N, Harada E, et al. A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report. Respir Med Case Rep. 2017;21:89-92doi: 10.1016/j.rmcr.2017.03.023.
Mikumo, H., Hamada, N., Harada, E., Yanagihara, T., Ogata, S., Yabuuchi, H., Ijichi, K., Takayama, K., & Nakanishi, Y. (2017). A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report. Respiratory medicine case reports, 2189-92. https://doi.org/10.1016/j.rmcr.2017.03.023
Mikumo, Hironori, et al. "A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report." Respiratory medicine case reports vol. 21 (2017): 89-92. doi: https://doi.org/10.1016/j.rmcr.2017.03.023
Mikumo H, Hamada N, Harada E, Yanagihara T, Ogata S, Yabuuchi H, Ijichi K, Takayama K, Nakanishi Y. A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report. Respir Med Case Rep. 2017 Apr 08;21:89-92. doi: 10.1016/j.rmcr.2017.03.023. eCollection 2017. PMID: 28443233; PMCID: PMC5392773.
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Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells .

Oncology letters

Harada K, Ferdous T, Harada T, Takenawa T, Ueyama Y.
PMID: 28927087
Oncol Lett. 2017 Sep;14(3):3349-3356. doi: 10.3892/ol.2017.6602. Epub 2017 Jul 18.

Gimeracil or 5-chloro-2,4-dihydroxypyridine (CDHP) enhances the antitumor effects of 5-fluorouracil (5-FU) by inhibiting dihydropyrimidine dehydrogenase (DPD), which is involved in the degradation of 5-FU. CDHP, as part of a combination therapy, was also reported to exert a radiosensitizing effect....

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Harada K, Ferdous T, Harada T, et al. Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells . Oncol Lett. 2017;14(3):3349-3356doi: 10.3892/ol.2017.6602.
Harada, K., Ferdous, T., Harada, T., Takenawa, T., & Ueyama, Y. (2017). Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells . Oncology letters, 14(3), 3349-3356. https://doi.org/10.3892/ol.2017.6602
Harada, Koji, et al. "Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells ." Oncology letters vol. 14,3 (2017): 3349-3356. doi: https://doi.org/10.3892/ol.2017.6602
Harada K, Ferdous T, Harada T, Takenawa T, Ueyama Y. Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells . Oncol Lett. 2017 Sep;14(3):3349-3356. doi: 10.3892/ol.2017.6602. Epub 2017 Jul 18. PMID: 28927087; PMCID: PMC5587992.
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Recall and Believability of the Tips From Former Smokers Campaign Among University Students.

American journal of health education

Ickes MJ, Butler K, Rayens MK, Noland M, Wiggins AT, Hahn EJ.
PMID: 28396713
Am J Health Educ. 2016;47(5):324-331. doi: 10.1080/19325037.2016.1203841. Epub 2016 Aug 30.

BACKGROUND: Tobacco media campaigns are effective, but less is known regarding the impact on college students.PURPOSE: The purpose was to test the effects of an on-campus METHODS: A quasi-experimental pre-post design was used to assess the 8-week campaign with...

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Ickes MJ, Butler K, Rayens MK, et al. Recall and Believability of the Tips From Former Smokers Campaign Among University Students. Am J Health Educ. 2016;47(5):324-331doi: 10.1080/19325037.2016.1203841.
Ickes, M. J., Butler, K., Rayens, M. K., Noland, M., Wiggins, A. T., & Hahn, E. J. (2016). Recall and Believability of the Tips From Former Smokers Campaign Among University Students. American journal of health education, 47(5), 324-331. https://doi.org/10.1080/19325037.2016.1203841
Ickes, Melinda J, et al. "Recall and Believability of the Tips From Former Smokers Campaign Among University Students." American journal of health education vol. 47,5 (2016): 324-331. doi: https://doi.org/10.1080/19325037.2016.1203841
Ickes MJ, Butler K, Rayens MK, Noland M, Wiggins AT, Hahn EJ. Recall and Believability of the Tips From Former Smokers Campaign Among University Students. Am J Health Educ. 2016;47(5):324-331. doi: 10.1080/19325037.2016.1203841. Epub 2016 Aug 30. PMID: 28396713; PMCID: PMC5384107.
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Synthesis of MOF-525 Derived Nanoporous Carbons with Different Particle Sizes for Supercapacitor Application.

Chemistry, an Asian journal

Chang TH, Young C, Lee MH, Salunkhe RR, Alshehri SM, Ahamad T, Islam MT, Wu KC, Hossain MSA, Yamauchi Y, Ho KC.
PMID: 28977735
Chem Asian J. 2017 Nov 02;12(21):2857-2862. doi: 10.1002/asia.201701082. Epub 2017 Oct 04.

Nanoporous carbon (NC) materials have attracted great research interest for supercapacitor applications, because of their excellent electrochemical and mechanical stability, good electrical conductivity, and high surface area. Although there are many reports on metal-organic framework (MOF)-derived carbon materials, previous...

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Chang TH, Young C, Lee MH, et al. Synthesis of MOF-525 Derived Nanoporous Carbons with Different Particle Sizes for Supercapacitor Application. Chem Asian J. 2017;12(21):2857-2862doi: 10.1002/asia.201701082.
Chang, T. H., Young, C., Lee, M. H., Salunkhe, R. R., Alshehri, S. M., Ahamad, T., Islam, M. T., Wu, K. C., Hossain, M. S. A., Yamauchi, Y., & Ho, K. C. (2017). Synthesis of MOF-525 Derived Nanoporous Carbons with Different Particle Sizes for Supercapacitor Application. Chemistry, an Asian journal, 12(21), 2857-2862. https://doi.org/10.1002/asia.201701082
Chang, Ting-Hsiang, et al. "Synthesis of MOF-525 Derived Nanoporous Carbons with Different Particle Sizes for Supercapacitor Application." Chemistry, an Asian journal vol. 12,21 (2017): 2857-2862. doi: https://doi.org/10.1002/asia.201701082
Chang TH, Young C, Lee MH, Salunkhe RR, Alshehri SM, Ahamad T, Islam MT, Wu KC, Hossain MSA, Yamauchi Y, Ho KC. Synthesis of MOF-525 Derived Nanoporous Carbons with Different Particle Sizes for Supercapacitor Application. Chem Asian J. 2017 Nov 02;12(21):2857-2862. doi: 10.1002/asia.201701082. Epub 2017 Oct 04. PMID: 28977735.
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Practical Liposomal Formulation for Taxanes with Polyethoxylated Castor Oil and Ethanol with Complete Encapsulation Efficiency and High Loading Efficiency.

Nanomaterials (Basel, Switzerland)

Shigehiro T, Masuda J, Saito S, Khayrani AC, Jinno K, Seno A, Vaidyanath A, Mizutani A, Kasai T, Murakami H, Satoh A, Ito T, Hamada H, Seno Y, Mandai T, Seno M.
PMID: 28946623
Nanomaterials (Basel). 2017 Sep 23;7(10). doi: 10.3390/nano7100290.

Taxanes including paclitaxel and docetaxel are effective anticancer agents preferably sufficient for liposomal drug delivery. However, the encapsulation of these drugs with effective amounts into conventional liposomes is difficult due to their high hydrophobicity. Therefore, an effective encapsulation strategy...

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Shigehiro T, Masuda J, Saito S, et al. Practical Liposomal Formulation for Taxanes with Polyethoxylated Castor Oil and Ethanol with Complete Encapsulation Efficiency and High Loading Efficiency. Nanomaterials (Basel). 2017;7(10)doi: 10.3390/nano7100290.
Shigehiro, T., Masuda, J., Saito, S., Khayrani, A. C., Jinno, K., Seno, A., Vaidyanath, A., Mizutani, A., Kasai, T., Murakami, H., Satoh, A., Ito, T., Hamada, H., Seno, Y., Mandai, T., & Seno, M. (2017). Practical Liposomal Formulation for Taxanes with Polyethoxylated Castor Oil and Ethanol with Complete Encapsulation Efficiency and High Loading Efficiency. Nanomaterials (Basel, Switzerland), 7(10), . https://doi.org/10.3390/nano7100290
Shigehiro, Tsukasa, et al. "Practical Liposomal Formulation for Taxanes with Polyethoxylated Castor Oil and Ethanol with Complete Encapsulation Efficiency and High Loading Efficiency." Nanomaterials (Basel, Switzerland) vol. 7,10 (2017). doi: https://doi.org/10.3390/nano7100290
Shigehiro T, Masuda J, Saito S, Khayrani AC, Jinno K, Seno A, Vaidyanath A, Mizutani A, Kasai T, Murakami H, Satoh A, Ito T, Hamada H, Seno Y, Mandai T, Seno M. Practical Liposomal Formulation for Taxanes with Polyethoxylated Castor Oil and Ethanol with Complete Encapsulation Efficiency and High Loading Efficiency. Nanomaterials (Basel). 2017 Sep 23;7(10). doi: 10.3390/nano7100290. PMID: 28946623; PMCID: PMC5666455.
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Showing 1 to 12 of 4066 entries