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Protein–protein docking benchmark version 4.0

Build and Broaden 3.0 AND Program Evaluation

Hwang H, Janin J, Vreven T.
GSID: b-j6xhrDV9YJ
H Hwang, T Vreven, J Janin… - … : Structure, Function, and …, 2010 - Wiley Online Library

We updated our protein–protein docking benchmark to include complexes that became available since our previous release. As before, we only considered high‐resolution complex …

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Hwang, H., Vreven, T., Janin, J., & Weng, Z. (2010). Protein–protein docking benchmark version 4.0. Proteins: Structure, Function, and Bioinformatics, 78(15), 3111-3114.
Hwang, Howook, et al. "Protein–protein docking benchmark version 4.0." Proteins: Structure, Function, and Bioinformatics 78.15 (2010): 3111-3114.
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Strongly spin-orbit coupled two-dimensional electron gas emerging near the surface of polar semiconductors.

Physical review letters

Sakano M, Bahramy MS, Katayama A, Shimojima T, Murakawa H, Kaneko Y, Malaeb W, Shin S, Ono K, Kumigashira H, Arita R, Nagaosa N, Hwang HY, Tokura Y, Ishizaka K.
PMID: 23521291
Phys Rev Lett. 2013 Mar 08;110(10):107204. doi: 10.1103/PhysRevLett.110.107204. Epub 2013 Mar 07.

We investigate the two-dimensional highly spin-polarized electron accumulation layers commonly appearing near the surface of n-type polar semiconductors BiTeX (X=I, Br, and Cl) by angular-resolved photoemission spectroscopy. Because of the polarity and the strong spin-orbit interaction built in the...

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Sakano M, Bahramy MS, Katayama A, et al. Strongly spin-orbit coupled two-dimensional electron gas emerging near the surface of polar semiconductors. Phys Rev Lett. 2013;110(10):107204doi: 10.1103/PhysRevLett.110.107204.
Sakano, M., Bahramy, M. S., Katayama, A., Shimojima, T., Murakawa, H., Kaneko, Y., Malaeb, W., Shin, S., Ono, K., Kumigashira, H., Arita, R., Nagaosa, N., Hwang, H. Y., Tokura, Y., & Ishizaka, K. (2013). Strongly spin-orbit coupled two-dimensional electron gas emerging near the surface of polar semiconductors. Physical review letters, 110(10), 107204. https://doi.org/10.1103/PhysRevLett.110.107204
Sakano, M, et al. "Strongly spin-orbit coupled two-dimensional electron gas emerging near the surface of polar semiconductors." Physical review letters vol. 110,10 (2013): 107204. doi: https://doi.org/10.1103/PhysRevLett.110.107204
Sakano M, Bahramy MS, Katayama A, Shimojima T, Murakawa H, Kaneko Y, Malaeb W, Shin S, Ono K, Kumigashira H, Arita R, Nagaosa N, Hwang HY, Tokura Y, Ishizaka K. Strongly spin-orbit coupled two-dimensional electron gas emerging near the surface of polar semiconductors. Phys Rev Lett. 2013 Mar 08;110(10):107204. doi: 10.1103/PhysRevLett.110.107204. Epub 2013 Mar 07. PMID: 23521291.
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Is microsatellite instability really a good prognostic factor of colorectal cancer?.

Annals of coloproctology

Shin US, Cho SS, Moon SM, Park SH, Jee SH, Jung EJ, Hwang DY.
PMID: 24639968
Ann Coloproctol. 2014 Feb;30(1):28-34. doi: 10.3393/ac.2014.30.1.28. Epub 2014 Feb 28.

PURPOSE: The aim of this study was to investigate the clinicopathologic features of and the prognosis for colorectal cancers (CRCs) with microsatellite instabilities (MSIs).METHODS: Between 2006 and 2009, genotyping was performed on 245 patients with stage II/III CRCs to...

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Shin US, Cho SS, Moon SM, et al. Is microsatellite instability really a good prognostic factor of colorectal cancer?. Ann Coloproctol. 2014;30(1):28-34doi: 10.3393/ac.2014.30.1.28.
Shin, U. S., Cho, S. S., Moon, S. M., Park, S. H., Jee, S. H., Jung, E. J., & Hwang, D. Y. (2014). Is microsatellite instability really a good prognostic factor of colorectal cancer?. Annals of coloproctology, 30(1), 28-34. https://doi.org/10.3393/ac.2014.30.1.28
Shin, Ui Sup, et al. "Is microsatellite instability really a good prognostic factor of colorectal cancer?." Annals of coloproctology vol. 30,1 (2014): 28-34. doi: https://doi.org/10.3393/ac.2014.30.1.28
Shin US, Cho SS, Moon SM, Park SH, Jee SH, Jung EJ, Hwang DY. Is microsatellite instability really a good prognostic factor of colorectal cancer?. Ann Coloproctol. 2014 Feb;30(1):28-34. doi: 10.3393/ac.2014.30.1.28. Epub 2014 Feb 28. PMID: 24639968; PMCID: PMC3953166.
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Dichloromethane extracts of propolis protect cell from oxygen-glucose deprivation-induced oxidative stress via reducing apoptosis.

Food & nutrition research

Sun LP, Xu X, Hwang HH, Wang X, Su KY, Chen YL.
PMID: 27329777
Food Nutr Res. 2016 Jun 20;60:30081. doi: 10.3402/fnr.v60.30081. eCollection 2016.

BACKGROUND: Bee propolis, a mixture of the secretion from bee tongue gland and wax gland, was collected from the tree bud and barked by bees. The components were rich in terpenes, phenolics, and flavonoids, and had anti-cancer, anti-bacterial, anti-inflammatory,...

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Sun LP, Xu X, Hwang HH, et al. Dichloromethane extracts of propolis protect cell from oxygen-glucose deprivation-induced oxidative stress via reducing apoptosis. Food Nutr Res. 2016;60:30081doi: 10.3402/fnr.v60.30081.
Sun, L. P., Xu, X., Hwang, H. H., Wang, X., Su, K. Y., & Chen, Y. L. (2016). Dichloromethane extracts of propolis protect cell from oxygen-glucose deprivation-induced oxidative stress via reducing apoptosis. Food & nutrition research, 6030081. https://doi.org/10.3402/fnr.v60.30081
Sun, Li-Ping, et al. "Dichloromethane extracts of propolis protect cell from oxygen-glucose deprivation-induced oxidative stress via reducing apoptosis." Food & nutrition research vol. 60 (2016): 30081. doi: https://doi.org/10.3402/fnr.v60.30081
Sun LP, Xu X, Hwang HH, Wang X, Su KY, Chen YL. Dichloromethane extracts of propolis protect cell from oxygen-glucose deprivation-induced oxidative stress via reducing apoptosis. Food Nutr Res. 2016 Jun 20;60:30081. doi: 10.3402/fnr.v60.30081. eCollection 2016. PMID: 27329777; PMCID: PMC4916261.
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Barcode System for Genetic Identification of Soybean [.

Frontiers in plant science

Sohn HB, Kim SJ, Hwang TY, Park HM, Lee YY, Markkandan K, Lee D, Lee S, Hong SY, Song YH, Koo BC, Kim YH.
PMID: 28443113
Front Plant Sci. 2017 Apr 10;8:520. doi: 10.3389/fpls.2017.00520. eCollection 2017.

For genetic identification of soybean [

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Sohn HB, Kim SJ, Hwang TY, et al. Barcode System for Genetic Identification of Soybean [. Front Plant Sci. 2017;8:520doi: 10.3389/fpls.2017.00520.
Sohn, H. B., Kim, S. J., Hwang, T. Y., Park, H. M., Lee, Y. Y., Markkandan, K., Lee, D., Lee, S., Hong, S. Y., Song, Y. H., Koo, B. C., & Kim, Y. H. (2017). Barcode System for Genetic Identification of Soybean [. Frontiers in plant science, 8520. https://doi.org/10.3389/fpls.2017.00520
Sohn, Hwang-Bae, et al. "Barcode System for Genetic Identification of Soybean [." Frontiers in plant science vol. 8 (2017): 520. doi: https://doi.org/10.3389/fpls.2017.00520
Sohn HB, Kim SJ, Hwang TY, Park HM, Lee YY, Markkandan K, Lee D, Lee S, Hong SY, Song YH, Koo BC, Kim YH. Barcode System for Genetic Identification of Soybean [. Front Plant Sci. 2017 Apr 10;8:520. doi: 10.3389/fpls.2017.00520. eCollection 2017. PMID: 28443113; PMCID: PMC5385371.
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The effects of stretching exercise for upper trapezius on the asymmetric rate of bite force.

Journal of physical therapy science

Lee B, Lee J, Yang J, Heo K, Hwang H, Kim B, Han D.
PMID: 26311945
J Phys Ther Sci. 2015 Jul;27(7):2159-62. doi: 10.1589/jpts.27.2159. Epub 2015 Jul 22.

[Purpose] The purpose of this study was to observe the effects of stretching the upper trapezius muscle on the asymmetric rate of bite force. [Subjects] Forty-seven female university students who had all their original teeth, had no disorders in...

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Lee B, Lee J, Yang J, et al. The effects of stretching exercise for upper trapezius on the asymmetric rate of bite force. J Phys Ther Sci. 2015;27(7):2159-62doi: 10.1589/jpts.27.2159.
Lee, B., Lee, J., Yang, J., Heo, K., Hwang, H., Kim, B., & Han, D. (2015). The effects of stretching exercise for upper trapezius on the asymmetric rate of bite force. Journal of physical therapy science, 27(7), 2159-62. https://doi.org/10.1589/jpts.27.2159
Lee, Bomjin, et al. "The effects of stretching exercise for upper trapezius on the asymmetric rate of bite force." Journal of physical therapy science vol. 27,7 (2015): 2159-62. doi: https://doi.org/10.1589/jpts.27.2159
Lee B, Lee J, Yang J, Heo K, Hwang H, Kim B, Han D. The effects of stretching exercise for upper trapezius on the asymmetric rate of bite force. J Phys Ther Sci. 2015 Jul;27(7):2159-62. doi: 10.1589/jpts.27.2159. Epub 2015 Jul 22. PMID: 26311945; PMCID: PMC4540840.
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Reflection-type spatial amplitude modulation of visible light based on a sub-wavelength plasmonic absorber.

Optics letters

Hwang CY, Yi Y, Choi CG.
PMID: 26974098
Opt Lett. 2016 Mar 01;41(5):990-3. doi: 10.1364/OL.41.000990.

We present a method for reflection-type spatial amplitude modulation using a sub-wavelength plasmonic absorber structure that can operate in the visible region. We utilize a pixelated array of absorbing elements based on a two-dimensional sub-wavelength metal grating, and the...

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Hwang CY, Yi Y, Choi CG. Reflection-type spatial amplitude modulation of visible light based on a sub-wavelength plasmonic absorber. Opt Lett. 2016;41(5):990-3doi: 10.1364/OL.41.000990.
Hwang, C. Y., Yi, Y., & Choi, C. G. (2016). Reflection-type spatial amplitude modulation of visible light based on a sub-wavelength plasmonic absorber. Optics letters, 41(5), 990-3. https://doi.org/10.1364/OL.41.000990
Hwang, Chi-Young, et al. "Reflection-type spatial amplitude modulation of visible light based on a sub-wavelength plasmonic absorber." Optics letters vol. 41,5 (2016): 990-3. doi: https://doi.org/10.1364/OL.41.000990
Hwang CY, Yi Y, Choi CG. Reflection-type spatial amplitude modulation of visible light based on a sub-wavelength plasmonic absorber. Opt Lett. 2016 Mar 01;41(5):990-3. doi: 10.1364/OL.41.000990. PMID: 26974098.
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Ultra-High Speed Fabrication of TiO2 Photoanode by Flash Light for Dye-Sensitized Solar Cell.

Journal of nanoscience and nanotechnology

Hwang HJ, Kim HS.
PMID: 26373072
J Nanosci Nanotechnol. 2015 Jul;15(7):5028-34. doi: 10.1166/jnn.2015.9868.

In this work, a new way to fabricate nanoporous TiO2 photoanode by flash light is demonstrated. TiO2 nanoparticles are sintered on FTO glass by flash light irradiation at room temperature in ambient condition, which is dramatically simple, ultrahigh speed...

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Hwang HJ, Kim HS. Ultra-High Speed Fabrication of TiO2 Photoanode by Flash Light for Dye-Sensitized Solar Cell. J Nanosci Nanotechnol. 2015;15(7):5028-34doi: 10.1166/jnn.2015.9868.
Hwang, H. J., & Kim, H. S. (2015). Ultra-High Speed Fabrication of TiO2 Photoanode by Flash Light for Dye-Sensitized Solar Cell. Journal of nanoscience and nanotechnology, 15(7), 5028-34. https://doi.org/10.1166/jnn.2015.9868
Hwang, Hyun-Jun, and Kim, Hak-Sung. "Ultra-High Speed Fabrication of TiO2 Photoanode by Flash Light for Dye-Sensitized Solar Cell." Journal of nanoscience and nanotechnology vol. 15,7 (2015): 5028-34. doi: https://doi.org/10.1166/jnn.2015.9868
Hwang HJ, Kim HS. Ultra-High Speed Fabrication of TiO2 Photoanode by Flash Light for Dye-Sensitized Solar Cell. J Nanosci Nanotechnol. 2015 Jul;15(7):5028-34. doi: 10.1166/jnn.2015.9868. PMID: 26373072.
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A highly active and stable IrOx/SrIrO3 catalyst for the oxygen evolution reaction.

Science (New York, N.Y.)

Seitz LC, Dickens CF, Nishio K, Hikita Y, Montoya J, Doyle A, Kirk C, Vojvodic A, Hwang HY, Norskov JK, Jaramillo TF.
PMID: 27701108
Science. 2016 Sep 02;353(6303):1011-1014. doi: 10.1126/science.aaf5050.

Oxygen electrochemistry plays a key role in renewable energy technologies such as fuel cells and electrolyzers, but the slow kinetics of the oxygen evolution reaction (OER) limit the performance and commercialization of such devices. Here we report an iridium...

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Seitz LC, Dickens CF, Nishio K, et al. A highly active and stable IrOx/SrIrO3 catalyst for the oxygen evolution reaction. Science. 2016;353(6303):1011-1014doi: 10.1126/science.aaf5050.
Seitz, L. C., Dickens, C. F., Nishio, K., Hikita, Y., Montoya, J., Doyle, A., Kirk, C., Vojvodic, A., Hwang, H. Y., Norskov, J. K., & Jaramillo, T. F. (2016). A highly active and stable IrOx/SrIrO3 catalyst for the oxygen evolution reaction. Science (New York, N.Y.), 353(6303), 1011-1014. https://doi.org/10.1126/science.aaf5050
Seitz, Linsey C, et al. "A highly active and stable IrOx/SrIrO3 catalyst for the oxygen evolution reaction." Science (New York, N.Y.) vol. 353,6303 (2016): 1011-1014. doi: https://doi.org/10.1126/science.aaf5050
Seitz LC, Dickens CF, Nishio K, Hikita Y, Montoya J, Doyle A, Kirk C, Vojvodic A, Hwang HY, Norskov JK, Jaramillo TF. A highly active and stable IrOx/SrIrO3 catalyst for the oxygen evolution reaction. Science. 2016 Sep 02;353(6303):1011-1014. doi: 10.1126/science.aaf5050. PMID: 27701108.
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High-intensity focused ultrasound combined with hysteroscopic resection to treat retained placenta accreta.

Obstetrics & gynecology science

Lee JS, Hong GY, Park BJ, Hwang H, Kim R, Kim TE.
PMID: 27668209
Obstet Gynecol Sci. 2016 Sep;59(5):421-5. doi: 10.5468/ogs.2016.59.5.421. Epub 2016 Sep 13.

We present a case of retained placenta accreta treated by high-intensity focused ultrasound (HIFU) ablation followed by hysteroscopic resection. The patient was diagnosed as submucosal myoma based on ultrasonography in local clinic. Pathologic examination of several pieces of tumor...

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Lee JS, Hong GY, Park BJ, et al. High-intensity focused ultrasound combined with hysteroscopic resection to treat retained placenta accreta. Obstet Gynecol Sci. 2016;59(5):421-5doi: 10.5468/ogs.2016.59.5.421.
Lee, J. S., Hong, G. Y., Park, B. J., Hwang, H., Kim, R., & Kim, T. E. (2016). High-intensity focused ultrasound combined with hysteroscopic resection to treat retained placenta accreta. Obstetrics & gynecology science, 59(5), 421-5. https://doi.org/10.5468/ogs.2016.59.5.421
Lee, Jae-Seong, et al. "High-intensity focused ultrasound combined with hysteroscopic resection to treat retained placenta accreta." Obstetrics & gynecology science vol. 59,5 (2016): 421-5. doi: https://doi.org/10.5468/ogs.2016.59.5.421
Lee JS, Hong GY, Park BJ, Hwang H, Kim R, Kim TE. High-intensity focused ultrasound combined with hysteroscopic resection to treat retained placenta accreta. Obstet Gynecol Sci. 2016 Sep;59(5):421-5. doi: 10.5468/ogs.2016.59.5.421. Epub 2016 Sep 13. PMID: 27668209; PMCID: PMC5028653.
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Extracellular Matrix-Dependent Generation of Integration- and Xeno-Free iPS Cells Using a Modified mRNA Transfection Method.

Stem cells international

Lee KI, Lee SY, Hwang DY.
PMID: 27057175
Stem Cells Int. 2016;2016:6853081. doi: 10.1155/2016/6853081. Epub 2016 Jan 12.

Human induced pluripotent stem cells (iPS cells) hold great promise in the field of regenerative medicine, especially immune-compatible cell therapy. The most important safety-related issues that must be resolved before the clinical use of iPS cells include the generation...

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Lee KI, Lee SY, Hwang DY. Extracellular Matrix-Dependent Generation of Integration- and Xeno-Free iPS Cells Using a Modified mRNA Transfection Method. Stem Cells Int. 2016;2016:6853081doi: 10.1155/2016/6853081.
Lee, K. I., Lee, S. Y., & Hwang, D. Y. (2016). Extracellular Matrix-Dependent Generation of Integration- and Xeno-Free iPS Cells Using a Modified mRNA Transfection Method. Stem cells international, 20166853081. https://doi.org/10.1155/2016/6853081
Lee, Kang-In, et al. "Extracellular Matrix-Dependent Generation of Integration- and Xeno-Free iPS Cells Using a Modified mRNA Transfection Method." Stem cells international vol. 2016 (2016): 6853081. doi: https://doi.org/10.1155/2016/6853081
Lee KI, Lee SY, Hwang DY. Extracellular Matrix-Dependent Generation of Integration- and Xeno-Free iPS Cells Using a Modified mRNA Transfection Method. Stem Cells Int. 2016;2016:6853081. doi: 10.1155/2016/6853081. Epub 2016 Jan 12. PMID: 27057175; PMCID: PMC4737460.
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Epigenetics: general characteristics and implications for oral health.

Restorative dentistry & endodontics

Seo JY, Park YJ, Yi YA, Hwang JY, Lee IB, Cho BH, Son HH, Seo DG.
PMID: 25671208
Restor Dent Endod. 2015 Feb;40(1):14-22. doi: 10.5395/rde.2015.40.1.14. Epub 2014 Nov 13.

Genetic information such as DNA sequences has been limited to fully explain mechanisms of gene regulation and disease process. Epigenetic mechanisms, which include DNA methylation, histone modification and non-coding RNAs, can regulate gene expression and affect progression of disease....

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Seo JY, Park YJ, Yi YA, et al. Epigenetics: general characteristics and implications for oral health. Restor Dent Endod. 2014;40(1):14-22doi: 10.5395/rde.2015.40.1.14.
Seo, J. Y., Park, Y. J., Yi, Y. A., Hwang, J. Y., Lee, I. B., Cho, B. H., Son, H. H., & Seo, D. G. (2015). Epigenetics: general characteristics and implications for oral health. Restorative dentistry & endodontics, 40(1), 14-22. https://doi.org/10.5395/rde.2015.40.1.14
Seo, Ji-Yun, et al. "Epigenetics: general characteristics and implications for oral health." Restorative dentistry & endodontics vol. 40,1 (2015): 14-22. doi: https://doi.org/10.5395/rde.2015.40.1.14
Seo JY, Park YJ, Yi YA, Hwang JY, Lee IB, Cho BH, Son HH, Seo DG. Epigenetics: general characteristics and implications for oral health. Restor Dent Endod. 2015 Feb;40(1):14-22. doi: 10.5395/rde.2015.40.1.14. Epub 2014 Nov 13. PMID: 25671208; PMCID: PMC4320272.
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Showing 1 to 12 of 3564 entries