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Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction

pipeline programs

Jain A, Kagaya Y, Terashi G.
GSID: Ywp51u3Q3i8J
A Jain, G Terashi, Y Kagaya… - Scientific Reports, 2021 - nature.com

Protein 3D structure prediction has advanced significantly in recent years due to improving contact prediction accuracy. This improvement has been largely due to deep learning …

Severe lack of comprehension of common prostate health terms among low‐income inner‐city men

socioeconomic status & related terms (e.g., low income)

Jani AB, Tai CG, Lee DK.
GSID: n_HAFvWMSWgJ
DS Wang, AB Jani, CG Tai, M Sesay, DK Lee… - Cancer, 2013 - Wiley Online Library

… socioeconomic status and education to the level of comprehension of commonly used prostate cancer terms among a predominantly low-… For example, when asked about the function of …

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Wang, D. S., Jani, A. B., Tai, C. G., Sesay, M., Lee, D. K., Goodman, M., ... & Master, V. A. (2013). Severe lack of comprehension of common prostate health terms among low‐income inner‐city men. Cancer, 119(17), 3204-3211.
Wang, Daniel S., et al. "Severe lack of comprehension of common prostate health terms among low‐income inner‐city men." Cancer 119.17 (2013): 3204-3211.
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Mixed adenoneuroendocrine carcinoma of cecum: a rare entity.

Journal of clinical imaging science

Jain A, Singla S, Jagdeesh KS, Vishnumurthy HY.
PMID: 23607079
J Clin Imaging Sci. 2013 Feb 28;3:10. doi: 10.4103/2156-7514.107995. Print 2013.

Mixed adenoneuroendocrine carcinoma of cecum (MANEC) was first reported by Cardier in 1924. These tumors are thought to arise from multi-potential stem cells, which have differentiated bidirectionally. Location of the tumor influences the treatment and outcome. We report a...

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Jain A, Singla S, Jagdeesh KS, et al. Mixed adenoneuroendocrine carcinoma of cecum: a rare entity. J Clin Imaging Sci. 2013;3:10doi: 10.4103/2156-7514.107995.
Jain, A., Singla, S., Jagdeesh, K. S., & Vishnumurthy, H. Y. (2013). Mixed adenoneuroendocrine carcinoma of cecum: a rare entity. Journal of clinical imaging science, 310. https://doi.org/10.4103/2156-7514.107995
Jain, Aditi, et al. "Mixed adenoneuroendocrine carcinoma of cecum: a rare entity." Journal of clinical imaging science vol. 3 (2013): 10. doi: https://doi.org/10.4103/2156-7514.107995
Jain A, Singla S, Jagdeesh KS, Vishnumurthy HY. Mixed adenoneuroendocrine carcinoma of cecum: a rare entity. J Clin Imaging Sci. 2013 Feb 28;3:10. doi: 10.4103/2156-7514.107995. Print 2013. PMID: 23607079; PMCID: PMC3625879.
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Genetic Resistance to Malaria Is Associated With Greater Enhancement of Immunoglobulin (Ig)M Than IgG Responses to a Broad Array of Plasmodium falciparum Antigens.

Open forum infectious diseases

Arama C, Skinner J, Doumtabe D, Portugal S, Tran TM, Jain A, Traore B, Doumbo OK, Davies DH, Troye-Blomberg M, Dolo A, Felgner PL, Crompton PD.
PMID: 26361633
Open Forum Infect Dis. 2015 Aug 26;2(3):ofv118. doi: 10.1093/ofid/ofv118. eCollection 2015 Sep.

Background.  People of the Fulani ethnic group are more resistant to malaria compared with genetically distinct ethnic groups, such as the Dogon people, in West Africa, and studies suggest that this resistance is mediated by enhanced antibody responses to...

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Arama C, Skinner J, Doumtabe D, et al. Genetic Resistance to Malaria Is Associated With Greater Enhancement of Immunoglobulin (Ig)M Than IgG Responses to a Broad Array of Plasmodium falciparum Antigens. Open Forum Infect Dis. 2015;2(3):ofv118doi: 10.1093/ofid/ofv118.
Arama, C., Skinner, J., Doumtabe, D., Portugal, S., Tran, T. M., Jain, A., Traore, B., Doumbo, O. K., Davies, D. H., Troye-Blomberg, M., Dolo, A., Felgner, P. L., & Crompton, P. D. (2015). Genetic Resistance to Malaria Is Associated With Greater Enhancement of Immunoglobulin (Ig)M Than IgG Responses to a Broad Array of Plasmodium falciparum Antigens. Open forum infectious diseases, 2(3), ofv118. https://doi.org/10.1093/ofid/ofv118
Arama, Charles, et al. "Genetic Resistance to Malaria Is Associated With Greater Enhancement of Immunoglobulin (Ig)M Than IgG Responses to a Broad Array of Plasmodium falciparum Antigens." Open forum infectious diseases vol. 2,3 (2015): ofv118. doi: https://doi.org/10.1093/ofid/ofv118
Arama C, Skinner J, Doumtabe D, Portugal S, Tran TM, Jain A, Traore B, Doumbo OK, Davies DH, Troye-Blomberg M, Dolo A, Felgner PL, Crompton PD. Genetic Resistance to Malaria Is Associated With Greater Enhancement of Immunoglobulin (Ig)M Than IgG Responses to a Broad Array of Plasmodium falciparum Antigens. Open Forum Infect Dis. 2015 Aug 26;2(3):ofv118. doi: 10.1093/ofid/ofv118. eCollection 2015 Sep. PMID: 26361633; PMCID: PMC4564391.
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MRI in Chemotherapy induced Leukoencephalopathy: Report of Two Cases and Radiologist's Perspective.

Journal of clinical and diagnostic research : JCDR

Sindhwani G, Arora M, Thakker VD, Jain A.
PMID: 28893007
J Clin Diagn Res. 2017 Jul;11(7):TD08-TD09. doi: 10.7860/JCDR/2017/29164.10248. Epub 2017 Jul 01.

Leukoencephalopathy is a progressive white matter disease primarily caused due to myelin damage by a variety of factors. Chemotherapy for oncological treatment is an uncommon but important cause of potentially reversible leukoencephalopathy. In current radiological setting, conventional and diffusion...

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Sindhwani G, Arora M, Thakker VD, et al. MRI in Chemotherapy induced Leukoencephalopathy: Report of Two Cases and Radiologist's Perspective. J Clin Diagn Res. 2017;11(7):TD08-TD09doi: 10.7860/JCDR/2017/29164.10248.
Sindhwani, G., Arora, M., Thakker, V. D., & Jain, A. (2017). MRI in Chemotherapy induced Leukoencephalopathy: Report of Two Cases and Radiologist's Perspective. Journal of clinical and diagnostic research : JCDR, 11(7), TD08-TD09. https://doi.org/10.7860/JCDR/2017/29164.10248
Sindhwani, Geetika, et al. "MRI in Chemotherapy induced Leukoencephalopathy: Report of Two Cases and Radiologist's Perspective." Journal of clinical and diagnostic research : JCDR vol. 11,7 (2017): TD08-TD09. doi: https://doi.org/10.7860/JCDR/2017/29164.10248
Sindhwani G, Arora M, Thakker VD, Jain A. MRI in Chemotherapy induced Leukoencephalopathy: Report of Two Cases and Radiologist's Perspective. J Clin Diagn Res. 2017 Jul;11(7):TD08-TD09. doi: 10.7860/JCDR/2017/29164.10248. Epub 2017 Jul 01. PMID: 28893007; PMCID: PMC5583911.
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Factors that support successful transition to the community among women leaving prison in British Columbia: a prospective cohort study using participatory action research.

CMAJ open

Janssen PA, Korchinski M, Desmarais SL, Albert AYK, Condello LL, Buchanan M, Granger-Brown A, Ramsden VR, Fels L, Buxton JA, Leggo C, Martin RE.
PMID: 28928168
CMAJ Open. 2017 Sep 13;5(3):E717-E723. doi: 10.9778/cmajo.20160165.

BACKGROUND: In Canada, the number of women sentenced to prison has almost doubled since 1995. In British Columbia, the rate of reincarceration is 70% within 2 years. Our aim was to identify factors associated with recidivism among women in...

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Janssen PA, Korchinski M, Desmarais SL, et al. Factors that support successful transition to the community among women leaving prison in British Columbia: a prospective cohort study using participatory action research. CMAJ Open. 2017;5(3):E717-E723doi: 10.9778/cmajo.20160165.
Janssen, P. A., Korchinski, M., Desmarais, S. L., Albert, A. Y. K., Condello, L. L., Buchanan, M., Granger-Brown, A., Ramsden, V. R., Fels, L., Buxton, J. A., Leggo, C., & Martin, R. E. (2017). Factors that support successful transition to the community among women leaving prison in British Columbia: a prospective cohort study using participatory action research. CMAJ open, 5(3), E717-E723. https://doi.org/10.9778/cmajo.20160165
Janssen, Patricia A, et al. "Factors that support successful transition to the community among women leaving prison in British Columbia: a prospective cohort study using participatory action research." CMAJ open vol. 5,3 (2017): E717-E723. doi: https://doi.org/10.9778/cmajo.20160165
Janssen PA, Korchinski M, Desmarais SL, Albert AYK, Condello LL, Buchanan M, Granger-Brown A, Ramsden VR, Fels L, Buxton JA, Leggo C, Martin RE. Factors that support successful transition to the community among women leaving prison in British Columbia: a prospective cohort study using participatory action research. CMAJ Open. 2017 Sep 13;5(3):E717-E723. doi: 10.9778/cmajo.20160165. PMID: 28928168; PMCID: PMC5621961.
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Oxidized Cellulose (Surgicel) Causing Postoperative Cauda Equine Syndrome.

Cureus

Rustagi T, Patel K, Kadrekar S, Jain A.
PMID: 28948120
Cureus. 2017 Jul 21;9(7):e1500. doi: 10.7759/cureus.1500.

Hemostatic agents are often used in spine surgery to control excessive bleeding. Oxidized cellulose (OC) is a common hemostatic agent used for this purpose. We present a case of postoperative cauda equina syndrome caused by Surgicel (Johnson & Johnson,...

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Rustagi T, Patel K, Kadrekar S, et al. Oxidized Cellulose (Surgicel) Causing Postoperative Cauda Equine Syndrome. Cureus. 2017;9(7):e1500doi: 10.7759/cureus.1500.
Rustagi, T., Patel, K., Kadrekar, S., & Jain, A. (2017). Oxidized Cellulose (Surgicel) Causing Postoperative Cauda Equine Syndrome. Cureus, 9(7), e1500. https://doi.org/10.7759/cureus.1500
Rustagi, Tarush, et al. "Oxidized Cellulose (Surgicel) Causing Postoperative Cauda Equine Syndrome." Cureus vol. 9,7 (2017): e1500. doi: https://doi.org/10.7759/cureus.1500
Rustagi T, Patel K, Kadrekar S, Jain A. Oxidized Cellulose (Surgicel) Causing Postoperative Cauda Equine Syndrome. Cureus. 2017 Jul 21;9(7):e1500. doi: 10.7759/cureus.1500. PMID: 28948120; PMCID: PMC5608483.
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Chemical and biological assessment of metal organic frameworks (MOFs) in pulmonary cells and in an acute in vivo model: relevance to pulmonary arterial hypertension therapy.

Pulmonary circulation

Mohamed NA, Davies RP, Lickiss PD, Ahmetaj-Shala B, Reed DM, Gashaw HH, Saleem H, Freeman GR, George PM, Wort SJ, Morales-Cano D, Barreira B, Tetley TD, Chester AH, Yacoub MH, Kirkby NS, Moreno L, Mitchell JA.
PMID: 28447910
Pulm Circ. 2017 Jul-Sep;7(3):643-653. doi: 10.1177/2045893217710224. Epub 2017 Jun 27.

Pulmonary arterial hypertension (PAH) is a progressive and debilitating condition. Despite promoting vasodilation, current drugs have a therapeutic window within which they are limited by systemic side effects. Nanomedicine uses nanoparticles to improve drug delivery and/or reduce side effects....

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Mohamed NA, Davies RP, Lickiss PD, et al. Chemical and biological assessment of metal organic frameworks (MOFs) in pulmonary cells and in an acute in vivo model: relevance to pulmonary arterial hypertension therapy. Pulm Circ. 2017;7(3):643-653doi: 10.1177/2045893217710224.
Mohamed, N. A., Davies, R. P., Lickiss, P. D., Ahmetaj-Shala, B., Reed, D. M., Gashaw, H. H., Saleem, H., Freeman, G. R., George, P. M., Wort, S. J., Morales-Cano, D., Barreira, B., Tetley, T. D., Chester, A. H., Yacoub, M. H., Kirkby, N. S., Moreno, L., & Mitchell, J. A. (2017). Chemical and biological assessment of metal organic frameworks (MOFs) in pulmonary cells and in an acute in vivo model: relevance to pulmonary arterial hypertension therapy. Pulmonary circulation, 7(3), 643-653. https://doi.org/10.1177/2045893217710224
Mohamed, Nura A, et al. "Chemical and biological assessment of metal organic frameworks (MOFs) in pulmonary cells and in an acute in vivo model: relevance to pulmonary arterial hypertension therapy." Pulmonary circulation vol. 7,3 (2017): 643-653. doi: https://doi.org/10.1177/2045893217710224
Mohamed NA, Davies RP, Lickiss PD, Ahmetaj-Shala B, Reed DM, Gashaw HH, Saleem H, Freeman GR, George PM, Wort SJ, Morales-Cano D, Barreira B, Tetley TD, Chester AH, Yacoub MH, Kirkby NS, Moreno L, Mitchell JA. Chemical and biological assessment of metal organic frameworks (MOFs) in pulmonary cells and in an acute in vivo model: relevance to pulmonary arterial hypertension therapy. Pulm Circ. 2017 Jul-Sep;7(3):643-653. doi: 10.1177/2045893217710224. Epub 2017 Jun 27. PMID: 28447910; PMCID: PMC5841901.
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Physicochemical and Functional Characterization of Blue-Shelled Eggs in Korea.

Korean journal for food science of animal resources

Sujiwo J, Kim D, Yoon JY, Kim H, Kim JS, Lee SK, Jang A.
PMID: 28515642
Korean J Food Sci Anim Resour. 2017;37(2):181-190. doi: 10.5851/kosfa.2017.37.2.181. Epub 2017 Apr 30.

The aim of this study was to compare the quality and physicochemical characteristics of blue-shelled eggs (BE) and conventional eggs (CE). Proximate composition, quality, pH value, shell color, collagen content, fatty acid composition, total cholesterol, α-glucosidase inhibition activity, and...

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Sujiwo J, Kim D, Yoon JY, et al. Physicochemical and Functional Characterization of Blue-Shelled Eggs in Korea. Korean J Food Sci Anim Resour. 2017;37(2):181-190doi: 10.5851/kosfa.2017.37.2.181.
Sujiwo, J., Kim, D., Yoon, J. Y., Kim, H., Kim, J. S., Lee, S. K., & Jang, A. (2017). Physicochemical and Functional Characterization of Blue-Shelled Eggs in Korea. Korean journal for food science of animal resources, 37(2), 181-190. https://doi.org/10.5851/kosfa.2017.37.2.181
Sujiwo, Joko, et al. "Physicochemical and Functional Characterization of Blue-Shelled Eggs in Korea." Korean journal for food science of animal resources vol. 37,2 (2017): 181-190. doi: https://doi.org/10.5851/kosfa.2017.37.2.181
Sujiwo J, Kim D, Yoon JY, Kim H, Kim JS, Lee SK, Jang A. Physicochemical and Functional Characterization of Blue-Shelled Eggs in Korea. Korean J Food Sci Anim Resour. 2017;37(2):181-190. doi: 10.5851/kosfa.2017.37.2.181. Epub 2017 Apr 30. PMID: 28515642; PMCID: PMC5434205.
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Dataset of mouse hippocampus profiled by LC-MS/MS for label-free quantitation.

Data in brief

English JA, Scaife C, Harauma A, Focking M, Wynne K, Cagney G, Moriguchi T, Cotter DR.
PMID: 26977433
Data Brief. 2016 Feb 15;7:341-3. doi: 10.1016/j.dib.2015.12.057. eCollection 2016 Jun.

This dataset reports on the analysis of mouse hippocampus by LC-MS/MS, from mice fed a diet that was either deficient in n-3 FA (n-3 Def) or sufficient in n-3 FA (n-3 Adq). Label free quantitative (LFQ) analysis of the...

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English JA, Scaife C, Harauma A, et al. Dataset of mouse hippocampus profiled by LC-MS/MS for label-free quantitation. Data Brief. 2016;7:341-3doi: 10.1016/j.dib.2015.12.057.
English, J. A., Scaife, C., Harauma, A., Focking, M., Wynne, K., Cagney, G., Moriguchi, T., & Cotter, D. R. (2016). Dataset of mouse hippocampus profiled by LC-MS/MS for label-free quantitation. Data in brief, 7341-3. https://doi.org/10.1016/j.dib.2015.12.057
English, Jane A, et al. "Dataset of mouse hippocampus profiled by LC-MS/MS for label-free quantitation." Data in brief vol. 7 (2016): 341-3. doi: https://doi.org/10.1016/j.dib.2015.12.057
English JA, Scaife C, Harauma A, Focking M, Wynne K, Cagney G, Moriguchi T, Cotter DR. Dataset of mouse hippocampus profiled by LC-MS/MS for label-free quantitation. Data Brief. 2016 Feb 15;7:341-3. doi: 10.1016/j.dib.2015.12.057. eCollection 2016 Jun. PMID: 26977433; PMCID: PMC4781930.
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Approach to the management of rare clinical presentations of macroprolactinomas in reproductive-aged women.

Case reports in women's health

De Ycaza AE, Chang AY, Jensen JR, Khan Z, Erickson D.
PMID: 27668187
Case Rep Womens Health. 2015 Oct;8:9-12. doi: 10.1016/j.crwh.2015.09.001. Epub 2015 Sep 24.

OBJECTIVE: To describe 2 cases of macroprolactinomas with atypical presentation in women desiring pregnancy that illustrate important considerations in the management approach for macroprolactinomas in reproductive-aged women.PATIENTS: Case 1 was a 26-year-old woman referred to our institution for possible...

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De Ycaza AE, Chang AY, Jensen JR, et al. Approach to the management of rare clinical presentations of macroprolactinomas in reproductive-aged women. Case Rep Womens Health. 2015;8:9-12doi: 10.1016/j.crwh.2015.09.001.
De Ycaza, A. E., Chang, A. Y., Jensen, J. R., Khan, Z., & Erickson, D. (2015). Approach to the management of rare clinical presentations of macroprolactinomas in reproductive-aged women. Case reports in women's health, 89-12. https://doi.org/10.1016/j.crwh.2015.09.001
De Ycaza, Ana Espinosa, et al. "Approach to the management of rare clinical presentations of macroprolactinomas in reproductive-aged women." Case reports in women's health vol. 8 (2015): 9-12. doi: https://doi.org/10.1016/j.crwh.2015.09.001
De Ycaza AE, Chang AY, Jensen JR, Khan Z, Erickson D. Approach to the management of rare clinical presentations of macroprolactinomas in reproductive-aged women. Case Rep Womens Health. 2015 Oct;8:9-12. doi: 10.1016/j.crwh.2015.09.001. Epub 2015 Sep 24. PMID: 27668187; PMCID: PMC5033506.
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Recurrent Patellar Instabilty Culminating in a Vertically Rotated and a Locked Patellar Dislocation - A Rare Entity.

Journal of orthopaedic case reports

A D, R R, A J, H M, S S.
PMID: 27703948
J Orthop Case Rep. 2016 Apr-Jun;6(2):95-97. doi: 10.13107/jocr.2250-0685.456.

INTRODUCTION: Locked vertical patellar dislocations are rare and pose a therapeutic challenge. This case is more unusual, as the patient was a known case of recurrent patellar dislocation and presented with an atraumatic locked and vertically rotated patellar dislocation....

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A D, R R, A J, et al. Recurrent Patellar Instabilty Culminating in a Vertically Rotated and a Locked Patellar Dislocation - A Rare Entity. J Orthop Case Rep. 2016;6(2):95-97doi: 10.13107/jocr.2250-0685.456.
A, D., R, R., A, J., H, M., & S, S. (2016). Recurrent Patellar Instabilty Culminating in a Vertically Rotated and a Locked Patellar Dislocation - A Rare Entity. Journal of orthopaedic case reports, 6(2), 95-97. https://doi.org/10.13107/jocr.2250-0685.456
A, Devgan, et al. "Recurrent Patellar Instabilty Culminating in a Vertically Rotated and a Locked Patellar Dislocation - A Rare Entity." Journal of orthopaedic case reports vol. 6,2 (2016): 95-97. doi: https://doi.org/10.13107/jocr.2250-0685.456
A D, R R, A J, H M, S S. Recurrent Patellar Instabilty Culminating in a Vertically Rotated and a Locked Patellar Dislocation - A Rare Entity. J Orthop Case Rep. 2016 Apr-Jun;6(2):95-97. doi: 10.13107/jocr.2250-0685.456. PMID: 27703948; PMCID: PMC5040587.
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Showing 1 to 12 of 3020 entries