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Dynamical modeling of uncertain interaction-based genomic networks.

BMC bioinformatics

Mohsenizadeh DN, Hua J, Bittner M, Dougherty ER.
PMID: 26423606
BMC Bioinformatics. 2015;16:S3. doi: 10.1186/1471-2105-16-S13-S3. Epub 2015 Sep 25.

BACKGROUND: Most dynamical models for genomic networks are built upon two current methodologies, one process-based and the other based on Boolean-type networks. Both are problematic when it comes to experimental design purposes in the laboratory. The first approach requires...

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Mohsenizadeh DN, Hua J, Bittner M, et al. Dynamical modeling of uncertain interaction-based genomic networks. BMC Bioinformatics. 2015;16:S3doi: 10.1186/1471-2105-16-S13-S3.
Mohsenizadeh, D. N., Hua, J., Bittner, M., & Dougherty, E. R. (2015). Dynamical modeling of uncertain interaction-based genomic networks. BMC bioinformatics, 16S3. https://doi.org/10.1186/1471-2105-16-S13-S3
Mohsenizadeh, Daniel N, et al. "Dynamical modeling of uncertain interaction-based genomic networks." BMC bioinformatics vol. 16 (2015): S3. doi: https://doi.org/10.1186/1471-2105-16-S13-S3
Mohsenizadeh DN, Hua J, Bittner M, Dougherty ER. Dynamical modeling of uncertain interaction-based genomic networks. BMC Bioinformatics. 2015;16:S3. doi: 10.1186/1471-2105-16-S13-S3. Epub 2015 Sep 25. PMID: 26423606; PMCID: PMC4596957.
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Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome.

Open forum infectious diseases

Rick AM, Aguilar A, Cortes R, Gordillo R, Melgar M, Samayoa-Reyes G, Frank DN, Asturias EJ.
PMID: 28480290
Open Forum Infect Dis. 2017 Feb 08;4(1):ofx020. doi: 10.1093/ofid/ofx020. eCollection 2017.

BACKGROUND: Infection causes 1 of every 5 neonatal deaths globally. Group B METHODS: A cross-sectional study in 2015 at a public hospital in Guatemala City enrolled women ≥35 weeks' gestation. Vaginal and rectal swabs were processed using Lim broth...

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Rick AM, Aguilar A, Cortes R, et al. Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome. Open Forum Infect Dis. 2017;4(1):ofx020doi: 10.1093/ofid/ofx020.
Rick, A. M., Aguilar, A., Cortes, R., Gordillo, R., Melgar, M., Samayoa-Reyes, G., Frank, D. N., & Asturias, E. J. (2017). Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome. Open forum infectious diseases, 4(1), ofx020. https://doi.org/10.1093/ofid/ofx020
Rick, Anne-Marie, et al. "Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome." Open forum infectious diseases vol. 4,1 (2017): ofx020. doi: https://doi.org/10.1093/ofid/ofx020
Rick AM, Aguilar A, Cortes R, Gordillo R, Melgar M, Samayoa-Reyes G, Frank DN, Asturias EJ. Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome. Open Forum Infect Dis. 2017 Feb 08;4(1):ofx020. doi: 10.1093/ofid/ofx020. eCollection 2017. PMID: 28480290; PMCID: PMC5414013.
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An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake.

Traffic (Copenhagen, Denmark)

Kee AJ, Yang L, Lucas CA, Greenberg MJ, Martel N, Leong GM, Hughes WE, Cooney GJ, James DE, Ostap EM, Han W, Gunning PW, Hardeman EC.
PMID: 26688443
Traffic. 2016 Jan;17(1):80-1. doi: 10.1111/tra.12342.

No abstract available.

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Kee AJ, Yang L, Lucas CA, et al. An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake. Traffic. 2016;17(1):80-1doi: 10.1111/tra.12342.
Kee, A. J., Yang, L., Lucas, C. A., Greenberg, M. J., Martel, N., Leong, G. M., Hughes, W. E., Cooney, G. J., James, D. E., Ostap, E. M., Han, W., Gunning, P. W., & Hardeman, E. C. (2016). An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake. Traffic (Copenhagen, Denmark), 17(1), 80-1. https://doi.org/10.1111/tra.12342
Kee, Anthony J, et al. "An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake." Traffic (Copenhagen, Denmark) vol. 17,1 (2016): 80-1. doi: https://doi.org/10.1111/tra.12342
Kee AJ, Yang L, Lucas CA, Greenberg MJ, Martel N, Leong GM, Hughes WE, Cooney GJ, James DE, Ostap EM, Han W, Gunning PW, Hardeman EC. An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake. Traffic. 2016 Jan;17(1):80-1. doi: 10.1111/tra.12342. PMID: 26688443; PMCID: PMC6886021.
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Use of wood-based materials in beef bedded manure packs: 2. Effect on odorous volatile organic compounds, odor activity value, , and nutrient concentrations.

Journal of environmental quality

Spiehs MJ, Brown-Brandl TM, Berry ED, Wells JE, Parker DB, Miller DN, Jaderborg JP, DiCostanzo A.
PMID: 25603068
J Environ Qual. 2014 Jul;43(4):1195-206. doi: 10.2134/jeq2013.05.0165.

The objectives of this study were to determine the effects of three types of wood-based bedding materials (kiln-dried pine wood chips, dry cedar chips, and green cedar chips) and corn stover on the concentration of odorous volatile organic compounds...

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Spiehs MJ, Brown-Brandl TM, Berry ED, et al. Use of wood-based materials in beef bedded manure packs: 2. Effect on odorous volatile organic compounds, odor activity value, , and nutrient concentrations. J Environ Qual. 2014;43(4):1195-206doi: 10.2134/jeq2013.05.0165.
Spiehs, M. J., Brown-Brandl, T. M., Berry, E. D., Wells, J. E., Parker, D. B., Miller, D. N., Jaderborg, J. P., & DiCostanzo, A. (2014). Use of wood-based materials in beef bedded manure packs: 2. Effect on odorous volatile organic compounds, odor activity value, , and nutrient concentrations. Journal of environmental quality, 43(4), 1195-206. https://doi.org/10.2134/jeq2013.05.0165
Spiehs, Mindy J, et al. "Use of wood-based materials in beef bedded manure packs: 2. Effect on odorous volatile organic compounds, odor activity value, , and nutrient concentrations." Journal of environmental quality vol. 43,4 (2014): 1195-206. doi: https://doi.org/10.2134/jeq2013.05.0165
Spiehs MJ, Brown-Brandl TM, Berry ED, Wells JE, Parker DB, Miller DN, Jaderborg JP, DiCostanzo A. Use of wood-based materials in beef bedded manure packs: 2. Effect on odorous volatile organic compounds, odor activity value, , and nutrient concentrations. J Environ Qual. 2014 Jul;43(4):1195-206. doi: 10.2134/jeq2013.05.0165. PMID: 25603068.
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Upper washita river experimental watersheds: multiyear stability of soil water content profiles.

Journal of environmental quality

Cosh MH, Starks PJ, Guzman JA, Moriasi DN.
PMID: 25603080
J Environ Qual. 2014 Jul;43(4):1328-33. doi: 10.2134/jeq2013.08.0318.

Scaling in situ soil water content time series data to a large spatial domain is a key element of watershed environmental monitoring and modeling. The primary method of estimating and monitoring large-scale soil water content distributions is via in...

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Cosh MH, Starks PJ, Guzman JA, et al. Upper washita river experimental watersheds: multiyear stability of soil water content profiles. J Environ Qual. 2014;43(4):1328-33doi: 10.2134/jeq2013.08.0318.
Cosh, M. H., Starks, P. J., Guzman, J. A., & Moriasi, D. N. (2014). Upper washita river experimental watersheds: multiyear stability of soil water content profiles. Journal of environmental quality, 43(4), 1328-33. https://doi.org/10.2134/jeq2013.08.0318
Cosh, Michael H, et al. "Upper washita river experimental watersheds: multiyear stability of soil water content profiles." Journal of environmental quality vol. 43,4 (2014): 1328-33. doi: https://doi.org/10.2134/jeq2013.08.0318
Cosh MH, Starks PJ, Guzman JA, Moriasi DN. Upper washita river experimental watersheds: multiyear stability of soil water content profiles. J Environ Qual. 2014 Jul;43(4):1328-33. doi: 10.2134/jeq2013.08.0318. PMID: 25603080.
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Spin-dependent charge transfer state design rules in organic photovoltaics.

Nature communications

Chang W, Congreve DN, Hontz E, Bahlke ME, McMahon DP, Reineke S, Wu TC, Bulović V, Van Voorhis T, Baldo MA.
PMID: 25762410
Nat Commun. 2015 Mar 12;6:6415. doi: 10.1038/ncomms7415.

Charge transfer states play a crucial role in organic photovoltaics, mediating both photocurrent generation and recombination losses. In this work, we examine recombination losses as a function of the electron-hole spacing in fluorescent charge transfer states, including direct monitoring...

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Chang W, Congreve DN, Hontz E, et al. Spin-dependent charge transfer state design rules in organic photovoltaics. Nat Commun. 2015;6:6415doi: 10.1038/ncomms7415.
Chang, W., Congreve, D. N., Hontz, E., Bahlke, M. E., McMahon, D. P., Reineke, S., Wu, T. C., Bulović, V., Van Voorhis, T., & Baldo, M. A. (2015). Spin-dependent charge transfer state design rules in organic photovoltaics. Nature communications, 66415. https://doi.org/10.1038/ncomms7415
Chang, Wendi, et al. "Spin-dependent charge transfer state design rules in organic photovoltaics." Nature communications vol. 6 (2015): 6415. doi: https://doi.org/10.1038/ncomms7415
Chang W, Congreve DN, Hontz E, Bahlke ME, McMahon DP, Reineke S, Wu TC, Bulović V, Van Voorhis T, Baldo MA. Spin-dependent charge transfer state design rules in organic photovoltaics. Nat Commun. 2015 Mar 12;6:6415. doi: 10.1038/ncomms7415. PMID: 25762410.
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Corrigendum: Arginine-rhamnosylation as new strategy to activate translation elongation factor P.

Nature chemical biology

Lassak J, Keilhauer EC, Fürst M, Wuichet K, Gödeke J, Starosta AL, Chen JM, Søgaard-Andersen L, Rohr J, Wilson DN, Häussler S, Mann M, Jung K.
PMID: 25785429
Nat Chem Biol. 2015 Apr;11(4):299. doi: 10.1038/nchembio0415-299d.

No abstract available.

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Lassak J, Keilhauer EC, Fürst M, et al. Corrigendum: Arginine-rhamnosylation as new strategy to activate translation elongation factor P. Nat Chem Biol. 2015;11(4):299doi: 10.1038/nchembio0415-299d.
Lassak, J., Keilhauer, E. C., Fürst, M., Wuichet, K., Gödeke, J., Starosta, A. L., Chen, J. M., Søgaard-Andersen, L., Rohr, J., Wilson, D. N., Häussler, S., Mann, M., & Jung, K. (2015). Corrigendum: Arginine-rhamnosylation as new strategy to activate translation elongation factor P. Nature chemical biology, 11(4), 299. https://doi.org/10.1038/nchembio0415-299d
Lassak, Jürgen, et al. "Corrigendum: Arginine-rhamnosylation as new strategy to activate translation elongation factor P." Nature chemical biology vol. 11,4 (2015): 299. doi: https://doi.org/10.1038/nchembio0415-299d
Lassak J, Keilhauer EC, Fürst M, Wuichet K, Gödeke J, Starosta AL, Chen JM, Søgaard-Andersen L, Rohr J, Wilson DN, Häussler S, Mann M, Jung K. Corrigendum: Arginine-rhamnosylation as new strategy to activate translation elongation factor P. Nat Chem Biol. 2015 Apr;11(4):299. doi: 10.1038/nchembio0415-299d. PMID: 25785429.
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Auto-Rejection of Renal Donor-Origin Metastatic Melanoma.

Radiology case reports

Kriegshauser JS, Weidenfeld PL, Wochos DN, Williams JW.
PMID: 27298706
Radiol Case Rep. 2015 Dec 07;1(4):149-53. doi: 10.2484/rcr.v1i4.44. eCollection 2006.

We report a case of metastatic malignant melanoma discovered in a living related donor shortly after renal transplant and subsequently diagnosed in the recipient. The recipient hepatic metastases were followed with serial computed tomography (CT) during regression/rejection of tumor...

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Kriegshauser JS, Weidenfeld PL, Wochos DN, et al. Auto-Rejection of Renal Donor-Origin Metastatic Melanoma. Radiol Case Rep. 2015;1(4):149-53doi: 10.2484/rcr.v1i4.44.
Kriegshauser, J. S., Weidenfeld, P. L., Wochos, D. N., & Williams, J. W. (2006). Auto-Rejection of Renal Donor-Origin Metastatic Melanoma. Radiology case reports, 1(4), 149-53. https://doi.org/10.2484/rcr.v1i4.44
Kriegshauser, J Scott, et al. "Auto-Rejection of Renal Donor-Origin Metastatic Melanoma." Radiology case reports vol. 1,4 (2006): 149-53. doi: https://doi.org/10.2484/rcr.v1i4.44
Kriegshauser JS, Weidenfeld PL, Wochos DN, Williams JW. Auto-Rejection of Renal Donor-Origin Metastatic Melanoma. Radiol Case Rep. 2015 Dec 07;1(4):149-53. doi: 10.2484/rcr.v1i4.44. eCollection 2006. PMID: 27298706; PMCID: PMC4891579.
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Reducing Architecture Limitations for Efficient Blue Perovskite Light-Emitting Diodes.

Advanced materials (Deerfield Beach, Fla.)

Gangishetty MK, Hou S, Quan Q, Congreve DN.
PMID: 29575250
Adv Mater. 2018 May;30(20):e1706226. doi: 10.1002/adma.201706226. Epub 2018 Mar 25.

Light-emitting diodes utilizing perovskite nanocrystals have generated strong interest in the past several years, with green and red devices showing high efficiencies. Blue devices, however, have lagged significantly behind. Here, it is shown that the device architecture plays a...

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Gangishetty MK, Hou S, Quan Q, et al. Reducing Architecture Limitations for Efficient Blue Perovskite Light-Emitting Diodes. Adv Mater. 2018;30(20):e1706226doi: 10.1002/adma.201706226.
Gangishetty, M. K., Hou, S., Quan, Q., & Congreve, D. N. (2018). Reducing Architecture Limitations for Efficient Blue Perovskite Light-Emitting Diodes. Advanced materials (Deerfield Beach, Fla.), 30(20), e1706226. https://doi.org/10.1002/adma.201706226
Gangishetty, Mahesh K, et al. "Reducing Architecture Limitations for Efficient Blue Perovskite Light-Emitting Diodes." Advanced materials (Deerfield Beach, Fla.) vol. 30,20 (2018): e1706226. doi: https://doi.org/10.1002/adma.201706226
Gangishetty MK, Hou S, Quan Q, Congreve DN. Reducing Architecture Limitations for Efficient Blue Perovskite Light-Emitting Diodes. Adv Mater. 2018 May;30(20):e1706226. doi: 10.1002/adma.201706226. Epub 2018 Mar 25. PMID: 29575250.
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Kinetic Selectivity and Thermodynamic Features of Competitive Imine Formation in Dynamic Covalent Chemistry.

Chemistry (Weinheim an der Bergstrasse, Germany)

Kulchat S, Chaur MN, Lehn JM.
PMID: 28628248
Chemistry. 2017 Aug 16;23(46):11108-11118. doi: 10.1002/chem.201702088. Epub 2017 Jul 26.

The kinetic and thermodynamic selectivities of imine formation have been investigated for several dynamic covalent libraries of aldehydes and amines. Two systems were examined, involving the reaction of different types of primary amino groups (aliphatic amines, alkoxy-amines, hydrazides and...

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Kulchat S, Chaur MN, Lehn JM. Kinetic Selectivity and Thermodynamic Features of Competitive Imine Formation in Dynamic Covalent Chemistry. Chemistry. 2017;23(46):11108-11118doi: 10.1002/chem.201702088.
Kulchat, S., Chaur, M. N., & Lehn, J. M. (2017). Kinetic Selectivity and Thermodynamic Features of Competitive Imine Formation in Dynamic Covalent Chemistry. Chemistry (Weinheim an der Bergstrasse, Germany), 23(46), 11108-11118. https://doi.org/10.1002/chem.201702088
Kulchat, Sirinan, et al. "Kinetic Selectivity and Thermodynamic Features of Competitive Imine Formation in Dynamic Covalent Chemistry." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 23,46 (2017): 11108-11118. doi: https://doi.org/10.1002/chem.201702088
Kulchat S, Chaur MN, Lehn JM. Kinetic Selectivity and Thermodynamic Features of Competitive Imine Formation in Dynamic Covalent Chemistry. Chemistry. 2017 Aug 16;23(46):11108-11118. doi: 10.1002/chem.201702088. Epub 2017 Jul 26. PMID: 28628248.
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Near-Earth injection of MeV electrons associated with intense dipolarization electric fields: Van Allen Probes observations.

Geophysical research letters

Dai L, Wang C, Duan S, He Z, Wygant JR, Cattell CA, Tao X, Su Z, Kletzing C, Baker DN, Li X, Malaspina D, Blake JB, Fennell J, Claudepierre S, Turner DL, Reeves GD, Funsten HO, Spence HE, Angelopoulos V, Fruehauff D, Chen L, Thaller S, Breneman A, Tang X.
PMID: 27656009
Geophys Res Lett. 2015 Aug 16;42(15):6170-6179. doi: 10.1002/2015GL064955. Epub 2015 Aug 10.

Substorms generally inject tens to hundreds of keV electrons, but intense substorm electric fields have been shown to inject MeV electrons as well. An intriguing question is whether such MeVelectron injections can populate the outer radiation belt. Here we...

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Dai L, Wang C, Duan S, et al. Near-Earth injection of MeV electrons associated with intense dipolarization electric fields: Van Allen Probes observations. Geophys Res Lett. 2015;42(15):6170-6179doi: 10.1002/2015GL064955.
Dai, L., Wang, C., Duan, S., He, Z., Wygant, J. R., Cattell, C. A., Tao, X., Su, Z., Kletzing, C., Baker, D. N., Li, X., Malaspina, D., Blake, J. B., Fennell, J., Claudepierre, S., Turner, D. L., Reeves, G. D., Funsten, H. O., Spence, H. E., Angelopoulos, V., Fruehauff, D., Chen, L., Thaller, S., Breneman, A., & Tang, X. (2015). Near-Earth injection of MeV electrons associated with intense dipolarization electric fields: Van Allen Probes observations. Geophysical research letters, 42(15), 6170-6179. https://doi.org/10.1002/2015GL064955
Dai, Lei, et al. "Near-Earth injection of MeV electrons associated with intense dipolarization electric fields: Van Allen Probes observations." Geophysical research letters vol. 42,15 (2015): 6170-6179. doi: https://doi.org/10.1002/2015GL064955
Dai L, Wang C, Duan S, He Z, Wygant JR, Cattell CA, Tao X, Su Z, Kletzing C, Baker DN, Li X, Malaspina D, Blake JB, Fennell J, Claudepierre S, Turner DL, Reeves GD, Funsten HO, Spence HE, Angelopoulos V, Fruehauff D, Chen L, Thaller S, Breneman A, Tang X. Near-Earth injection of MeV electrons associated with intense dipolarization electric fields: Van Allen Probes observations. Geophys Res Lett. 2015 Aug 16;42(15):6170-6179. doi: 10.1002/2015GL064955. Epub 2015 Aug 10. PMID: 27656009; PMCID: PMC5014237.
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Minimal Influence of [NiFe] Hydrogenase on Hydrogen Isotope Fractionation in H.

Frontiers in microbiology

Campbell BJ, Sessions AL, Fox DN, Paul BG, Qin Q, Kellermann MY, Valentine DL.
PMID: 29085342
Front Microbiol. 2017 Oct 04;8:1886. doi: 10.3389/fmicb.2017.01886. eCollection 2017.

Fatty acids produced by H

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Campbell BJ, Sessions AL, Fox DN, et al. Minimal Influence of [NiFe] Hydrogenase on Hydrogen Isotope Fractionation in H. Front Microbiol. 2017;8:1886doi: 10.3389/fmicb.2017.01886.
Campbell, B. J., Sessions, A. L., Fox, D. N., Paul, B. G., Qin, Q., Kellermann, M. Y., & Valentine, D. L. (2017). Minimal Influence of [NiFe] Hydrogenase on Hydrogen Isotope Fractionation in H. Frontiers in microbiology, 81886. https://doi.org/10.3389/fmicb.2017.01886
Campbell, Brian J, et al. "Minimal Influence of [NiFe] Hydrogenase on Hydrogen Isotope Fractionation in H." Frontiers in microbiology vol. 8 (2017): 1886. doi: https://doi.org/10.3389/fmicb.2017.01886
Campbell BJ, Sessions AL, Fox DN, Paul BG, Qin Q, Kellermann MY, Valentine DL. Minimal Influence of [NiFe] Hydrogenase on Hydrogen Isotope Fractionation in H. Front Microbiol. 2017 Oct 04;8:1886. doi: 10.3389/fmicb.2017.01886. eCollection 2017. PMID: 29085342; PMCID: PMC5649130.
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Showing 1 to 12 of 780 entries