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Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46

pipeline programs

Christoffer C, Terashi G, Shin WH.
GSID: gCcSiBVH7EYJ
C Christoffer, G Terashi, WH Shin… - Proteins: Structure …, 2020 - Wiley Online Library

… protein docking prediction pipeline of our group and the results for Critical Assessment of Prediction of Interactions (CAPRI) rounds 38-46. The pipeline integrates programs developed in our group as well as other existing scoring functions. The core of...

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Christoffer, C., Terashi, G., Shin, W. H., Aderinwale, T., Maddhuri Venkata Subramaniya, S. R., Peterson, L., ... & Kihara, D. (2020). Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46. Proteins: Structure, Function, and Bioinformatics, 88(8), 948-961.
Christoffer, Charles, et al. "Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46." Proteins: Structure, Function, and Bioinformatics 88.8 (2020): 948-961.
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A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics.

Korean circulation journal

Min SY, Shin JH, Lee SW, Doo E, Kim BK, Won YW, Park HC, Choi SI, Kim SG.
PMID: 23508451
Korean Circ J. 2013 Feb;43(2):132-4. doi: 10.4070/kcj.2013.43.2.132. Epub 2013 Feb 28.

Deep vein thrombosis (DVT) is a rare but potentially serious complication of coronary angiography (CAG) affecting just under 5 in 10000 patients. Most of the cases regarding DVT after CAG reported in the literature were associated with procedure-related vascular...

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Min SY, Shin JH, Lee SW, et al. A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics. Korean Circ J. 2013;43(2):132-4doi: 10.4070/kcj.2013.43.2.132.
Min, S. Y., Shin, J. H., Lee, S. W., Doo, E., Kim, B. K., Won, Y. W., Park, H. C., Choi, S. I., & Kim, S. G. (2013). A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics. Korean circulation journal, 43(2), 132-4. https://doi.org/10.4070/kcj.2013.43.2.132
Min, Seung Yeon, et al. "A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics." Korean circulation journal vol. 43,2 (2013): 132-4. doi: https://doi.org/10.4070/kcj.2013.43.2.132
Min SY, Shin JH, Lee SW, Doo E, Kim BK, Won YW, Park HC, Choi SI, Kim SG. A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics. Korean Circ J. 2013 Feb;43(2):132-4. doi: 10.4070/kcj.2013.43.2.132. Epub 2013 Feb 28. PMID: 23508451; PMCID: PMC3596662.
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Juvenile polyp and colonoscopic polypectomy in childhood.

Pediatric gastroenterology, hepatology & nutrition

Lee BG, Shin SH, Lee YA, Wi JH, Lee YJ, Park JH.
PMID: 24010095
Pediatr Gastroenterol Hepatol Nutr. 2012 Dec;15(4):250-5. doi: 10.5223/pghn.2012.15.4.250. Epub 2012 Dec 31.

PURPOSE: This study aimed to evaluate the clinical features of juvenile polyp and the usefulness of polypectomy with entire colonoscopy in children.METHODS: We retrospectively reviewed the medical records of 83 children who were diagnosed with having juvenile polyps.RESULTS: The...

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Lee BG, Shin SH, Lee YA, et al. Juvenile polyp and colonoscopic polypectomy in childhood. Pediatr Gastroenterol Hepatol Nutr. 2012;15(4):250-5doi: 10.5223/pghn.2012.15.4.250.
Lee, B. G., Shin, S. H., Lee, Y. A., Wi, J. H., Lee, Y. J., & Park, J. H. (2012). Juvenile polyp and colonoscopic polypectomy in childhood. Pediatric gastroenterology, hepatology & nutrition, 15(4), 250-5. https://doi.org/10.5223/pghn.2012.15.4.250
Lee, Byung Gee, et al. "Juvenile polyp and colonoscopic polypectomy in childhood." Pediatric gastroenterology, hepatology & nutrition vol. 15,4 (2012): 250-5. doi: https://doi.org/10.5223/pghn.2012.15.4.250
Lee BG, Shin SH, Lee YA, Wi JH, Lee YJ, Park JH. Juvenile polyp and colonoscopic polypectomy in childhood. Pediatr Gastroenterol Hepatol Nutr. 2012 Dec;15(4):250-5. doi: 10.5223/pghn.2012.15.4.250. Epub 2012 Dec 31. PMID: 24010095; PMCID: PMC3746052.
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Association of blood manganese level with diabetes and renal dysfunction: a cross-sectional study of the Korean general population.

BMC endocrine disorders

Koh ES, Kim SJ, Yoon HE, Chung JH, Chung S, Park CW, Chang YS, Shin SJ.
PMID: 24606630
BMC Endocr Disord. 2014 Mar 08;14:24. doi: 10.1186/1472-6823-14-24.

BACKGROUND: The purpose of this study was to evaluate the association between blood manganese levels and the prevalence of chronic diseases in the Korean population.METHODS: This was a cross-sectional study based on the Korean National Health and Nutrition Examination...

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Koh ES, Kim SJ, Yoon HE, et al. Association of blood manganese level with diabetes and renal dysfunction: a cross-sectional study of the Korean general population. BMC Endocr Disord. 2014;14:24doi: 10.1186/1472-6823-14-24.
Koh, E. S., Kim, S. J., Yoon, H. E., Chung, J. H., Chung, S., Park, C. W., Chang, Y. S., & Shin, S. J. (2014). Association of blood manganese level with diabetes and renal dysfunction: a cross-sectional study of the Korean general population. BMC endocrine disorders, 1424. https://doi.org/10.1186/1472-6823-14-24
Koh, Eun Sil, et al. "Association of blood manganese level with diabetes and renal dysfunction: a cross-sectional study of the Korean general population." BMC endocrine disorders vol. 14 (2014): 24. doi: https://doi.org/10.1186/1472-6823-14-24
Koh ES, Kim SJ, Yoon HE, Chung JH, Chung S, Park CW, Chang YS, Shin SJ. Association of blood manganese level with diabetes and renal dysfunction: a cross-sectional study of the Korean general population. BMC Endocr Disord. 2014 Mar 08;14:24. doi: 10.1186/1472-6823-14-24. PMID: 24606630; PMCID: PMC3973834.
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Improved efficiency of red phosphorescent organic light-emitting diodes with combination of heterojunction and mixed host structure.

Journal of nanoscience and nanotechnology

Lim DH, Lee SJ, Koo JR, Kim BY, Shin HS, Lee KH, Lee SY, Kim WY, Yoon SS, Kim YK.
PMID: 25936044
J Nanosci Nanotechnol. 2014 Aug;14(8):5998-6001. doi: 10.1166/jnn.2014.8442.

We report an improvement of efficiency in red phosphorescent organic light-emitting diodes (PHOLEDs) based on a combination of heterojunction (HJ) structure and mixed host (MH) system using a phosphorescent red emitter: bis(2-phenylquinolinato)-acetylacetonate iridium III [Ir(pq)2(acac)] doped in 4,4,N,N'-dicarbazolebiphenyl (CBP)...

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Lim DH, Lee SJ, Koo JR, et al. Improved efficiency of red phosphorescent organic light-emitting diodes with combination of heterojunction and mixed host structure. J Nanosci Nanotechnol. 2014;14(8):5998-6001doi: 10.1166/jnn.2014.8442.
Lim, D. H., Lee, S. J., Koo, J. R., Kim, B. Y., Shin, H. S., Lee, K. H., Lee, S. Y., Kim, W. Y., Yoon, S. S., & Kim, Y. K. (2014). Improved efficiency of red phosphorescent organic light-emitting diodes with combination of heterojunction and mixed host structure. Journal of nanoscience and nanotechnology, 14(8), 5998-6001. https://doi.org/10.1166/jnn.2014.8442
Lim, Dong Hwan, et al. "Improved efficiency of red phosphorescent organic light-emitting diodes with combination of heterojunction and mixed host structure." Journal of nanoscience and nanotechnology vol. 14,8 (2014): 5998-6001. doi: https://doi.org/10.1166/jnn.2014.8442
Lim DH, Lee SJ, Koo JR, Kim BY, Shin HS, Lee KH, Lee SY, Kim WY, Yoon SS, Kim YK. Improved efficiency of red phosphorescent organic light-emitting diodes with combination of heterojunction and mixed host structure. J Nanosci Nanotechnol. 2014 Aug;14(8):5998-6001. doi: 10.1166/jnn.2014.8442. PMID: 25936044.
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Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion.

Biomaterials research

Choi WY, Kim HE, Moon YW, Shin KH, Koh YH.
PMID: 26331085
Biomater Res. 2015 Jul 03;19:16. doi: 10.1186/s40824-015-0037-z. eCollection 2015.

BACKGROUND: Calcium phosphate (CaP) ceramics are one of the most valuable biomaterials for uses as the bone scaffold owing to their outstanding biocompatability, bioactivity, and biodegradation nature. In particular, these materials with an open porous structure can stimulate bone...

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Choi WY, Kim HE, Moon YW, et al. Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion. Biomater Res. 2015;19:16doi: 10.1186/s40824-015-0037-z.
Choi, W. Y., Kim, H. E., Moon, Y. W., Shin, K. H., & Koh, Y. H. (2015). Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion. Biomaterials research, 1916. https://doi.org/10.1186/s40824-015-0037-z
Choi, Won-Young, et al. "Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion." Biomaterials research vol. 19 (2015): 16. doi: https://doi.org/10.1186/s40824-015-0037-z
Choi WY, Kim HE, Moon YW, Shin KH, Koh YH. Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion. Biomater Res. 2015 Jul 03;19:16. doi: 10.1186/s40824-015-0037-z. eCollection 2015. PMID: 26331085; PMCID: PMC4552288.
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The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt-IKK-NF-κB-MMP-9 axis.

Scientific reports

Shin SY, Kim CG, Jung YJ, Lim Y, Lee YH.
PMID: 27658723
Sci Rep. 2016 Sep 23;6:34134. doi: 10.1038/srep34134.

(E)-3-(3,5-dimethoxyphenyl)-1-(2-methoxyphenyl)prop-2-en-1-one (DPP23) is a synthetic polyphenol derivative that selectively induces apoptosis in cancer cells through the unfolded protein response pathway. In the present study, we evaluated the effect of DPP23 on tumour invasion and metastasis. Here, we show that...

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Shin SY, Kim CG, Jung YJ, et al. The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt-IKK-NF-κB-MMP-9 axis. Sci Rep. 2016;6:34134doi: 10.1038/srep34134.
Shin, S. Y., Kim, C. G., Jung, Y. J., Lim, Y., & Lee, Y. H. (2016). The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt-IKK-NF-κB-MMP-9 axis. Scientific reports, 634134. https://doi.org/10.1038/srep34134
Shin, Soon Young, et al. "The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt-IKK-NF-κB-MMP-9 axis." Scientific reports vol. 6 (2016): 34134. doi: https://doi.org/10.1038/srep34134
Shin SY, Kim CG, Jung YJ, Lim Y, Lee YH. The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt-IKK-NF-κB-MMP-9 axis. Sci Rep. 2016 Sep 23;6:34134. doi: 10.1038/srep34134. PMID: 27658723; PMCID: PMC5034246.
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Persicarin isolated from .

Experimental and therapeutic medicine

Lee JY, Kim MY, Shin SH, Shin MR, Kwon OJ, Kim TH, Park CH, Noh JS, Rhee MH, Roh SS.
PMID: 28413457
Exp Ther Med. 2017 Apr;13(4):1194-1202. doi: 10.3892/etm.2017.4113. Epub 2017 Feb 10.

Persicarin is one of the major components of the

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Lee JY, Kim MY, Shin SH, et al. Persicarin isolated from . Exp Ther Med. 2017;13(4):1194-1202doi: 10.3892/etm.2017.4113.
Lee, J. Y., Kim, M. Y., Shin, S. H., Shin, M. R., Kwon, O. J., Kim, T. H., Park, C. H., Noh, J. S., Rhee, M. H., & Roh, S. S. (2017). Persicarin isolated from . Experimental and therapeutic medicine, 13(4), 1194-1202. https://doi.org/10.3892/etm.2017.4113
Lee, Joo Young, et al. "Persicarin isolated from ." Experimental and therapeutic medicine vol. 13,4 (2017): 1194-1202. doi: https://doi.org/10.3892/etm.2017.4113
Lee JY, Kim MY, Shin SH, Shin MR, Kwon OJ, Kim TH, Park CH, Noh JS, Rhee MH, Roh SS. Persicarin isolated from . Exp Ther Med. 2017 Apr;13(4):1194-1202. doi: 10.3892/etm.2017.4113. Epub 2017 Feb 10. PMID: 28413457; PMCID: PMC5377288.
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The Early Result of Cementless Arthroplasty for Femur Neck Fracture in Elderly Patients with Severe Osteoporosis.

Hip & pelvis

Seo JS, Shin SK, Jun SH, Cho CH, Lim BH.
PMID: 27536590
Hip Pelvis. 2014 Dec;26(4):256-62. doi: 10.5371/hp.2014.26.4.256. Epub 2014 Dec 31.

PURPOSE: The purposes of the current study were to assess the early results of cementless hip arthroplasty (HA) for femoral neck fractures in elderly patients with severe osteoporosis and to compare the clinical outcomes between those who underwent total...

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Seo JS, Shin SK, Jun SH, et al. The Early Result of Cementless Arthroplasty for Femur Neck Fracture in Elderly Patients with Severe Osteoporosis. Hip Pelvis. 2014;26(4):256-62doi: 10.5371/hp.2014.26.4.256.
Seo, J. S., Shin, S. K., Jun, S. H., Cho, C. H., & Lim, B. H. (2014). The Early Result of Cementless Arthroplasty for Femur Neck Fracture in Elderly Patients with Severe Osteoporosis. Hip & pelvis, 26(4), 256-62. https://doi.org/10.5371/hp.2014.26.4.256
Seo, Jae-Seong, et al. "The Early Result of Cementless Arthroplasty for Femur Neck Fracture in Elderly Patients with Severe Osteoporosis." Hip & pelvis vol. 26,4 (2014): 256-62. doi: https://doi.org/10.5371/hp.2014.26.4.256
Seo JS, Shin SK, Jun SH, Cho CH, Lim BH. The Early Result of Cementless Arthroplasty for Femur Neck Fracture in Elderly Patients with Severe Osteoporosis. Hip Pelvis. 2014 Dec;26(4):256-62. doi: 10.5371/hp.2014.26.4.256. Epub 2014 Dec 31. PMID: 27536590; PMCID: PMC4971402.
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Multi-functional magnesium alloys containing interstitial oxygen atoms.

Scientific reports

Kang H, Choi HJ, Kang SW, Shin SE, Choi GS, Bae DH.
PMID: 26976372
Sci Rep. 2016 Mar 15;6:23184. doi: 10.1038/srep23184.

A new class of magnesium alloys has been developed by dissolving large amounts of oxygen atoms into a magnesium lattice (Mg-O alloys). The oxygen atoms are supplied by decomposing titanium dioxide nanoparticles in a magnesium melt at 720 °C;...

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Kang H, Choi HJ, Kang SW, et al. Multi-functional magnesium alloys containing interstitial oxygen atoms. Sci Rep. 2016;6:23184doi: 10.1038/srep23184.
Kang, H., Choi, H. J., Kang, S. W., Shin, S. E., Choi, G. S., & Bae, D. H. (2016). Multi-functional magnesium alloys containing interstitial oxygen atoms. Scientific reports, 623184. https://doi.org/10.1038/srep23184
Kang, H, et al. "Multi-functional magnesium alloys containing interstitial oxygen atoms." Scientific reports vol. 6 (2016): 23184. doi: https://doi.org/10.1038/srep23184
Kang H, Choi HJ, Kang SW, Shin SE, Choi GS, Bae DH. Multi-functional magnesium alloys containing interstitial oxygen atoms. Sci Rep. 2016 Mar 15;6:23184. doi: 10.1038/srep23184. PMID: 26976372; PMCID: PMC4791639.
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[No title available]

Magnetic resonance in chemistry : MRC

Koh D, Shin SY, Sung J, Ahn S, Lim Y.
PMID: 28455848
Magn Reson Chem. 2017 Sep;55(9):856-863. doi: 10.1002/mrc.4603. Epub 2017 Jun 01.

No abstract available.

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Koh D, Shin SY, Sung J, et al. . Magn Reson Chem. 2017;55(9):856-863doi: 10.1002/mrc.4603.
Koh, D., Shin, S. Y., Sung, J., Ahn, S., & Lim, Y. (2017). . Magnetic resonance in chemistry : MRC, 55(9), 856-863. https://doi.org/10.1002/mrc.4603
Koh, Dongsoo, et al. "." Magnetic resonance in chemistry : MRC vol. 55,9 (2017): 856-863. doi: https://doi.org/10.1002/mrc.4603
Koh D, Shin SY, Sung J, Ahn S, Lim Y. . Magn Reson Chem. 2017 Sep;55(9):856-863. doi: 10.1002/mrc.4603. Epub 2017 Jun 01. PMID: 28455848.
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Endometrial adenocarcinoma in a 13-year-old girl.

Obstetrics & gynecology science

Kim SM, Shin SJ, Bae JG, Kwon KY, Rhee JH.
PMID: 27004208
Obstet Gynecol Sci. 2016 Mar;59(2):152-6. doi: 10.5468/ogs.2016.59.2.152. Epub 2016 Mar 16.

Endometrial cancer is the third most common gynecologic cancer in the Korea and occurs mainly in menopausal women. Although it can develop in young premenopausal women cancer as well, an attack in the adolescent girl is very rare. A...

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Kim SM, Shin SJ, Bae JG, et al. Endometrial adenocarcinoma in a 13-year-old girl. Obstet Gynecol Sci. 2016;59(2):152-6doi: 10.5468/ogs.2016.59.2.152.
Kim, S. M., Shin, S. J., Bae, J. G., Kwon, K. Y., & Rhee, J. H. (2016). Endometrial adenocarcinoma in a 13-year-old girl. Obstetrics & gynecology science, 59(2), 152-6. https://doi.org/10.5468/ogs.2016.59.2.152
Kim, Sung Mee, et al. "Endometrial adenocarcinoma in a 13-year-old girl." Obstetrics & gynecology science vol. 59,2 (2016): 152-6. doi: https://doi.org/10.5468/ogs.2016.59.2.152
Kim SM, Shin SJ, Bae JG, Kwon KY, Rhee JH. Endometrial adenocarcinoma in a 13-year-old girl. Obstet Gynecol Sci. 2016 Mar;59(2):152-6. doi: 10.5468/ogs.2016.59.2.152. Epub 2016 Mar 16. PMID: 27004208; PMCID: PMC4796087.
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Showing 1 to 12 of 4171 entries