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A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments.

Computational and structural biotechnology journal

Dona AC, Kyriakides M, Scott F, Shephard EA, Varshavi D, Veselkov K, Everett JR.
PMID: 27087910
Comput Struct Biotechnol J. 2016 Mar 09;14:135-53. doi: 10.1016/j.csbj.2016.02.005. eCollection 2016.

Metabonomics/metabolomics is an important science for the understanding of biological systems and the prediction of their behaviour, through the profiling of metabolites. Two technologies are routinely used in order to analyse metabolite profiles in biological fluids: nuclear magnetic resonance...

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Dona AC, Kyriakides M, Scott F, et al. A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments. Comput Struct Biotechnol J. 2016;14:135-53doi: 10.1016/j.csbj.2016.02.005.
Dona, A. C., Kyriakides, M., Scott, F., Shephard, E. A., Varshavi, D., Veselkov, K., & Everett, J. R. (2016). A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments. Computational and structural biotechnology journal, 14135-53. https://doi.org/10.1016/j.csbj.2016.02.005
Dona, Anthony C, et al. "A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments." Computational and structural biotechnology journal vol. 14 (2016): 135-53. doi: https://doi.org/10.1016/j.csbj.2016.02.005
Dona AC, Kyriakides M, Scott F, Shephard EA, Varshavi D, Veselkov K, Everett JR. A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments. Comput Struct Biotechnol J. 2016 Mar 09;14:135-53. doi: 10.1016/j.csbj.2016.02.005. eCollection 2016. PMID: 27087910; PMCID: PMC4821453.
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Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines.

Metabolomics : Official journal of the Metabolomic Society

Varshavi D, Varshavi D, McCarthy N, Veselkov K, Keun HC, Everett JR.
PMID: 34822010
Metabolomics. 2021 Nov 25;17(12):104. doi: 10.1007/s11306-021-01852-w.

INTRODUCTION: KRAS was one of the earliest human oncogenes to be described and is one of the most commonly mutated genes in different human cancers, including colorectal cancer. Despite KRAS mutants being known driver mutations, KRAS has proved difficult...

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Varshavi D, Varshavi D, McCarthy N, et al. Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics. 2021;17(12):104doi: 10.1007/s11306-021-01852-w.
Varshavi, D., Varshavi, D., McCarthy, N., Veselkov, K., Keun, H. C., & Everett, J. R. (2021). Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics : Official journal of the Metabolomic Society, 17(12), 104. https://doi.org/10.1007/s11306-021-01852-w
Varshavi, Dorna, et al. "Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines." Metabolomics : Official journal of the Metabolomic Society vol. 17,12 (2021): 104. doi: https://doi.org/10.1007/s11306-021-01852-w
Varshavi D, Varshavi D, McCarthy N, Veselkov K, Keun HC, Everett JR. Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics. 2021 Nov 25;17(12):104. doi: 10.1007/s11306-021-01852-w. PMID: 34822010; PMCID: PMC8616861.
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Quadriceps strength asymmetry as predictor of ankle sprain in male volleyball players.

The Journal of sports medicine and physical fitness

Hadzic V, Sattler T, Pori P, Veselko M, Dervišević E, Šarabon N, Marković G.
PMID: 33969957
J Sports Med Phys Fitness. 2021 May 10; doi: 10.23736/S0022-4707.21.12370-9. Epub 2021 May 10.

BACKGROUND: Ankle sprain is the most common acute time-loss injury in volleyball and occurs mainly during landing from a jump. Therefore we have evaluated the role of quadriceps strength and countermovement jump height on ankle sprain occurrence, as these...

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Hadzic V, Sattler T, Pori P, et al. Quadriceps strength asymmetry as predictor of ankle sprain in male volleyball players. J Sports Med Phys Fitness. 2021;doi: 10.23736/S0022-4707.21.12370-9.
Hadzic, V., Sattler, T., Pori, P., Veselko, M., Dervišević, E., Šarabon, N., & Marković, G. (2021). Quadriceps strength asymmetry as predictor of ankle sprain in male volleyball players. The Journal of sports medicine and physical fitness, . https://doi.org/10.23736/S0022-4707.21.12370-9
Hadzic, Vedran, et al. "Quadriceps strength asymmetry as predictor of ankle sprain in male volleyball players." The Journal of sports medicine and physical fitness vol. (2021). doi: https://doi.org/10.23736/S0022-4707.21.12370-9
Hadzic V, Sattler T, Pori P, Veselko M, Dervišević E, Šarabon N, Marković G. Quadriceps strength asymmetry as predictor of ankle sprain in male volleyball players. J Sports Med Phys Fitness. 2021 May 10; doi: 10.23736/S0022-4707.21.12370-9. Epub 2021 May 10. PMID: 33969957.
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16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic .

Microbiology resource announcements

Avila AT, Van Laar TA, Constable JVH, Waselkov K.
PMID: 33093045
Microbiol Resour Announc. 2020 Oct 22;9(43). doi: 10.1128/MRA.00968-20.

Here, we report the results of 16S rRNA gene amplicon sequencing of bacterial endophytes from parasitized and unparasitized samples of the common sunflower (

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Avila AT, Van Laar TA, Constable JVH, et al. 16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic . Microbiol Resour Announc. 2020;9(43)doi: 10.1128/MRA.00968-20.
Avila, A. T., Van Laar, T. A., Constable, J. V. H., & Waselkov, K. (2020). 16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic . Microbiology resource announcements, 9(43), . https://doi.org/10.1128/MRA.00968-20
Avila, Adam T, et al. "16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic ." Microbiology resource announcements vol. 9,43 (2020). doi: https://doi.org/10.1128/MRA.00968-20
Avila AT, Van Laar TA, Constable JVH, Waselkov K. 16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic . Microbiol Resour Announc. 2020 Oct 22;9(43). doi: 10.1128/MRA.00968-20. PMID: 33093045; PMCID: PMC7585843.
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Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer.

Chemical science

Inglese P, McKenzie JS, Mroz A, Kinross J, Veselkov K, Holmes E, Takats Z, Nicholson JK, Glen RC.
PMID: 28507724
Chem Sci. 2017 May 01;8(5):3500-3511. doi: 10.1039/c6sc03738k. Epub 2017 Feb 21.

Visual inspection of tumour tissues does not reveal the complex metabolic changes that differentiate cancer and its sub-types from healthy tissues. Mass spectrometry imaging, which quantifies the underlying chemistry, represents a powerful tool for the molecular exploration of tumour...

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Inglese P, McKenzie JS, Mroz A, et al. Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer. Chem Sci. 2017;8(5):3500-3511doi: 10.1039/c6sc03738k.
Inglese, P., McKenzie, J. S., Mroz, A., Kinross, J., Veselkov, K., Holmes, E., Takats, Z., Nicholson, J. K., & Glen, R. C. (2017). Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer. Chemical science, 8(5), 3500-3511. https://doi.org/10.1039/c6sc03738k
Inglese, Paolo, et al. "Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer." Chemical science vol. 8,5 (2017): 3500-3511. doi: https://doi.org/10.1039/c6sc03738k
Inglese P, McKenzie JS, Mroz A, Kinross J, Veselkov K, Holmes E, Takats Z, Nicholson JK, Glen RC. Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer. Chem Sci. 2017 May 01;8(5):3500-3511. doi: 10.1039/c6sc03738k. Epub 2017 Feb 21. PMID: 28507724; PMCID: PMC5418631.
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Minimally invasive reconstruction of the medial patellofemoral ligament using quadriceps tendon.

Arthroscopy techniques

Fink C, Veselko M, Herbort M, Hoser C.
PMID: 25126496
Arthrosc Tech. 2014 May 12;3(3):e325-9. doi: 10.1016/j.eats.2014.01.012. eCollection 2014 Jun.

Reconstruction of the medial patellofemoral ligament (MPFL) for the treatment of patellar instability has received increased attention over the past few years. Most operative techniques use hamstring grafts fixed with bone tunnels and/or anchors on the patella. Despite good...

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Fink C, Veselko M, Herbort M, et al. Minimally invasive reconstruction of the medial patellofemoral ligament using quadriceps tendon. Arthrosc Tech. 2014;3(3):e325-9doi: 10.1016/j.eats.2014.01.012.
Fink, C., Veselko, M., Herbort, M., & Hoser, C. (2014). Minimally invasive reconstruction of the medial patellofemoral ligament using quadriceps tendon. Arthroscopy techniques, 3(3), e325-9. https://doi.org/10.1016/j.eats.2014.01.012
Fink, Christian, et al. "Minimally invasive reconstruction of the medial patellofemoral ligament using quadriceps tendon." Arthroscopy techniques vol. 3,3 (2014): e325-9. doi: https://doi.org/10.1016/j.eats.2014.01.012
Fink C, Veselko M, Herbort M, Hoser C. Minimally invasive reconstruction of the medial patellofemoral ligament using quadriceps tendon. Arthrosc Tech. 2014 May 12;3(3):e325-9. doi: 10.1016/j.eats.2014.01.012. eCollection 2014 Jun. PMID: 25126496; PMCID: PMC4130138.
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Effect of salinity on water relations of wild barley plants differing in salt tolerance.

AoB PLANTS

Vysotskaya L, Hedley PE, Sharipova G, Veselov D, Kudoyarova G, Morris J, Jones HG.
PMID: 22476064
AoB Plants. 2010;2010:plq006. doi: 10.1093/aobpla/plq006. Epub 2010 May 16.

BACKGROUND AND AIMS: Certain lines of wild barley (Hordeum spontaneum) are more tolerant of salinity than others. The physiological basis of this difference is examined in a comparative study of a saline-tolerant and saline-intolerant line that emphasizes plant water...

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Vysotskaya L, Hedley PE, Sharipova G, et al. Effect of salinity on water relations of wild barley plants differing in salt tolerance. AoB Plants. 2010;2010:plq006doi: 10.1093/aobpla/plq006.
Vysotskaya, L., Hedley, P. E., Sharipova, G., Veselov, D., Kudoyarova, G., Morris, J., & Jones, H. G. (2010). Effect of salinity on water relations of wild barley plants differing in salt tolerance. AoB PLANTS, 2010plq006. https://doi.org/10.1093/aobpla/plq006
Vysotskaya, Lidia, et al. "Effect of salinity on water relations of wild barley plants differing in salt tolerance." AoB PLANTS vol. 2010 (2010): plq006. doi: https://doi.org/10.1093/aobpla/plq006
Vysotskaya L, Hedley PE, Sharipova G, Veselov D, Kudoyarova G, Morris J, Jones HG. Effect of salinity on water relations of wild barley plants differing in salt tolerance. AoB Plants. 2010;2010:plq006. doi: 10.1093/aobpla/plq006. Epub 2010 May 16. PMID: 22476064; PMCID: PMC3000697.
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Synthesis and Biological Evaluation of S-, O- and Se-Containing Dispirooxindoles.

Molecules (Basel, Switzerland)

Kukushkin M, Novotortsev V, Filatov V, Ivanenkov Y, Skvortsov D, Veselov M, Shafikov R, Moiseeva A, Zyk N, Majouga A, Beloglazkina E.
PMID: 34946727
Molecules. 2021 Dec 16;26(24). doi: 10.3390/molecules26247645.

A series of novel S-, O- and Se-containing dispirooxindole derivatives has been synthesized using 1,3-dipolar cycloaddition reaction of azomethine ylide generated from isatines and sarcosine at the double C=C bond of 5-indolidene-2-chalcogen-imidazolones (chalcogen was oxygen, sulfur or selenium). The...

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Kukushkin M, Novotortsev V, Filatov V, et al. Synthesis and Biological Evaluation of S-, O- and Se-Containing Dispirooxindoles. Molecules. 2021;26(24)doi: 10.3390/molecules26247645.
Kukushkin, M., Novotortsev, V., Filatov, V., Ivanenkov, Y., Skvortsov, D., Veselov, M., Shafikov, R., Moiseeva, A., Zyk, N., Majouga, A., & Beloglazkina, E. (2021). Synthesis and Biological Evaluation of S-, O- and Se-Containing Dispirooxindoles. Molecules (Basel, Switzerland), 26(24), . https://doi.org/10.3390/molecules26247645
Kukushkin, Maksim, et al. "Synthesis and Biological Evaluation of S-, O- and Se-Containing Dispirooxindoles." Molecules (Basel, Switzerland) vol. 26,24 (2021). doi: https://doi.org/10.3390/molecules26247645
Kukushkin M, Novotortsev V, Filatov V, Ivanenkov Y, Skvortsov D, Veselov M, Shafikov R, Moiseeva A, Zyk N, Majouga A, Beloglazkina E. Synthesis and Biological Evaluation of S-, O- and Se-Containing Dispirooxindoles. Molecules. 2021 Dec 16;26(24). doi: 10.3390/molecules26247645. PMID: 34946727.
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Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines.

Metabolomics : Official journal of the Metabolomic Society

Varshavi D, Varshavi D, McCarthy N, Veselkov K, Keun HC, Everett JR.
PMID: 34822010
Metabolomics. 2021 Nov 25;17(12):104. doi: 10.1007/s11306-021-01852-w.

INTRODUCTION: KRAS was one of the earliest human oncogenes to be described and is one of the most commonly mutated genes in different human cancers, including colorectal cancer. Despite KRAS mutants being known driver mutations, KRAS has proved difficult...

Cite
Varshavi D, Varshavi D, McCarthy N, et al. Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics. 2021;17(12):104doi: 10.1007/s11306-021-01852-w.
Varshavi, D., Varshavi, D., McCarthy, N., Veselkov, K., Keun, H. C., & Everett, J. R. (2021). Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics : Official journal of the Metabolomic Society, 17(12), 104. https://doi.org/10.1007/s11306-021-01852-w
Varshavi, Dorna, et al. "Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines." Metabolomics : Official journal of the Metabolomic Society vol. 17,12 (2021): 104. doi: https://doi.org/10.1007/s11306-021-01852-w
Varshavi D, Varshavi D, McCarthy N, Veselkov K, Keun HC, Everett JR. Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics. 2021 Nov 25;17(12):104. doi: 10.1007/s11306-021-01852-w. PMID: 34822010; PMCID: PMC8616861.
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ChemDistiller: an engine for metabolite annotation in mass spectrometry.

Bioinformatics (Oxford, England)

Laponogov I, Sadawi N, Galea D, Mirnezami R, Veselkov KA.
PMID: 29447341
Bioinformatics. 2018 Jun 15;34(12):2096-2102. doi: 10.1093/bioinformatics/bty080.

MOTIVATION: High-resolution mass spectrometry permits simultaneous detection of thousands of different metabolites in biological samples; however, their automated annotation still presents a challenge due to the limited number of tailored computational solutions freely available to the scientific community.RESULTS: Here,...

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Laponogov I, Sadawi N, Galea D, et al. ChemDistiller: an engine for metabolite annotation in mass spectrometry. Bioinformatics. 2018;34(12):2096-2102doi: 10.1093/bioinformatics/bty080.
Laponogov, I., Sadawi, N., Galea, D., Mirnezami, R., & Veselkov, K. A. (2018). ChemDistiller: an engine for metabolite annotation in mass spectrometry. Bioinformatics (Oxford, England), 34(12), 2096-2102. https://doi.org/10.1093/bioinformatics/bty080
Laponogov, Ivan, et al. "ChemDistiller: an engine for metabolite annotation in mass spectrometry." Bioinformatics (Oxford, England) vol. 34,12 (2018): 2096-2102. doi: https://doi.org/10.1093/bioinformatics/bty080
Laponogov I, Sadawi N, Galea D, Mirnezami R, Veselkov KA. ChemDistiller: an engine for metabolite annotation in mass spectrometry. Bioinformatics. 2018 Jun 15;34(12):2096-2102. doi: 10.1093/bioinformatics/bty080. PMID: 29447341.
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High-Temperature Oxidation of High-Entropic Alloys: A Review.

Materials (Basel, Switzerland)

Veselkov S, Samoilova O, Shaburova N, Trofimov E.
PMID: 34065772
Materials (Basel). 2021 May 16;14(10). doi: 10.3390/ma14102595.

Over the past few years, interest in high-entropic alloys (HEAs) has been growing. A large body of research has been undertaken to study aspects such as the microstructure features of HEAs of various compositions, the effect of the content...

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Veselkov S, Samoilova O, Shaburova N, et al. High-Temperature Oxidation of High-Entropic Alloys: A Review. Materials (Basel). 2021;14(10)doi: 10.3390/ma14102595.
Veselkov, S., Samoilova, O., Shaburova, N., & Trofimov, E. (2021). High-Temperature Oxidation of High-Entropic Alloys: A Review. Materials (Basel, Switzerland), 14(10), . https://doi.org/10.3390/ma14102595
Veselkov, Sergey, et al. "High-Temperature Oxidation of High-Entropic Alloys: A Review." Materials (Basel, Switzerland) vol. 14,10 (2021). doi: https://doi.org/10.3390/ma14102595
Veselkov S, Samoilova O, Shaburova N, Trofimov E. High-Temperature Oxidation of High-Entropic Alloys: A Review. Materials (Basel). 2021 May 16;14(10). doi: 10.3390/ma14102595. PMID: 34065772; PMCID: PMC8155970.
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Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines.

Metabolomics : Official journal of the Metabolomic Society

Varshavi D, Varshavi D, McCarthy N, Veselkov K, Keun HC, Everett JR.
PMID: 34822010
Metabolomics. 2021 Nov 25;17(12):104. doi: 10.1007/s11306-021-01852-w.

INTRODUCTION: KRAS was one of the earliest human oncogenes to be described and is one of the most commonly mutated genes in different human cancers, including colorectal cancer. Despite KRAS mutants being known driver mutations, KRAS has proved difficult...

Cite
Varshavi D, Varshavi D, McCarthy N, et al. Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics. 2021;17(12):104doi: 10.1007/s11306-021-01852-w.
Varshavi, D., Varshavi, D., McCarthy, N., Veselkov, K., Keun, H. C., & Everett, J. R. (2021). Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics : Official journal of the Metabolomic Society, 17(12), 104. https://doi.org/10.1007/s11306-021-01852-w
Varshavi, Dorna, et al. "Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines." Metabolomics : Official journal of the Metabolomic Society vol. 17,12 (2021): 104. doi: https://doi.org/10.1007/s11306-021-01852-w
Varshavi D, Varshavi D, McCarthy N, Veselkov K, Keun HC, Everett JR. Metabonomics study of the effects of single copy mutant KRAS in the presence or absence of WT allele using human HCT116 isogenic cell lines. Metabolomics. 2021 Nov 25;17(12):104. doi: 10.1007/s11306-021-01852-w. PMID: 34822010; PMCID: PMC8616861.
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Showing 1 to 12 of 33 entries