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STEM: species tree estimation using maximum likelihood for gene trees under coalescence

Stem career programs

Carstens BC, Knowles LL, Kubatko LS.
GSID: P_AKOKy1jIkJ
LS Kubatko, BC Carstens, LL Knowles - Bioinformatics, 2009 - academic.oup.com

STEM is a software package written in the C language to obtain maximum likelihood (ML) estimates for phylogenetic species trees given a sample of gene trees under the coalescent …

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Kubatko, L. S., Carstens, B. C., & Knowles, L. L. (2009). STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics, 25(7), 971-973.
Kubatko, Laura S., Bryan C. Carstens, and L. Lacey Knowles. "STEM: species tree estimation using maximum likelihood for gene trees under coalescence." Bioinformatics 25.7 (2009): 971-973.
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Femtosecond Enhancement Cavities in the Nonlinear Regime.

Physical review letters

Holzberger S, Lilienfein N, Carstens H, Saule T, Högner M, Lücking F, Trubetskov M, Pervak V, Eidam T, Limpert J, Tünnermann A, Fill E, Krausz F, Pupeza I.
PMID: 26207470
Phys Rev Lett. 2015 Jul 10;115(2):023902. doi: 10.1103/PhysRevLett.115.023902. Epub 2015 Jul 08.

We combine high-finesse optical resonators and spatial-spectral interferometry to a highly phase-sensitive investigation technique for nonlinear light-matter interactions. We experimentally validate an ab initio model for the nonlinear response of a resonator housing a gas target, permitting the global...

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Holzberger S, Lilienfein N, Carstens H, et al. Femtosecond Enhancement Cavities in the Nonlinear Regime. Phys Rev Lett. 2015;115(2):023902doi: 10.1103/PhysRevLett.115.023902.
Holzberger, S., Lilienfein, N., Carstens, H., Saule, T., Högner, M., Lücking, F., Trubetskov, M., Pervak, V., Eidam, T., Limpert, J., Tünnermann, A., Fill, E., Krausz, F., & Pupeza, I. (2015). Femtosecond Enhancement Cavities in the Nonlinear Regime. Physical review letters, 115(2), 023902. https://doi.org/10.1103/PhysRevLett.115.023902
Holzberger, S, et al. "Femtosecond Enhancement Cavities in the Nonlinear Regime." Physical review letters vol. 115,2 (2015): 023902. doi: https://doi.org/10.1103/PhysRevLett.115.023902
Holzberger S, Lilienfein N, Carstens H, Saule T, Högner M, Lücking F, Trubetskov M, Pervak V, Eidam T, Limpert J, Tünnermann A, Fill E, Krausz F, Pupeza I. Femtosecond Enhancement Cavities in the Nonlinear Regime. Phys Rev Lett. 2015 Jul 10;115(2):023902. doi: 10.1103/PhysRevLett.115.023902. Epub 2015 Jul 08. PMID: 26207470.
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Electrocatalytic methanol oxidation with nanoporous gold: microstructure and selectivity.

Nanoscale

Graf M, Haensch M, Carstens J, Wittstock G, Weissmüller J.
PMID: 29116276
Nanoscale. 2017 Nov 23;9(45):17839-17848. doi: 10.1039/c7nr05124g.

The properties of Nanoporous Gold (NPG) obtained by the selective dissolution of Ag from an Au-Ag alloy can be tuned by the details of its fabrication, and specifically the residual Ag content is correlated to the ligament size of...

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Graf M, Haensch M, Carstens J, et al. Electrocatalytic methanol oxidation with nanoporous gold: microstructure and selectivity. Nanoscale. 2017;9(45):17839-17848doi: 10.1039/c7nr05124g.
Graf, M., Haensch, M., Carstens, J., Wittstock, G., & Weissmüller, J. (2017). Electrocatalytic methanol oxidation with nanoporous gold: microstructure and selectivity. Nanoscale, 9(45), 17839-17848. https://doi.org/10.1039/c7nr05124g
Graf, Matthias, et al. "Electrocatalytic methanol oxidation with nanoporous gold: microstructure and selectivity." Nanoscale vol. 9,45 (2017): 17839-17848. doi: https://doi.org/10.1039/c7nr05124g
Graf M, Haensch M, Carstens J, Wittstock G, Weissmüller J. Electrocatalytic methanol oxidation with nanoporous gold: microstructure and selectivity. Nanoscale. 2017 Nov 23;9(45):17839-17848. doi: 10.1039/c7nr05124g. PMID: 29116276.
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Vascularized fibula strut graft used in neurofibromatosis type 1-related kyphosis: a case of almost complete reversal of deformity-induced tetraparesis.

Evidence-based spine-care journal

Melloh M, Hodgson B, Carstens A, Cornwall J.
PMID: 24436700
Evid Based Spine Care J. 2013 Apr;4(1):59-62. doi: 10.1055/s-0033-1341599.

Study Design Case report. Objective The aim of this study is to describe a case of vascularized fibula strut graft implanted in the cervicothoracic spine of a patient with neurofibromatosis type 1-related progressive kyphosis. Methods A detailed history examination...

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Melloh M, Hodgson B, Carstens A, et al. Vascularized fibula strut graft used in neurofibromatosis type 1-related kyphosis: a case of almost complete reversal of deformity-induced tetraparesis. Evid Based Spine Care J. 2013;4(1):59-62doi: 10.1055/s-0033-1341599.
Melloh, M., Hodgson, B., Carstens, A., & Cornwall, J. (2013). Vascularized fibula strut graft used in neurofibromatosis type 1-related kyphosis: a case of almost complete reversal of deformity-induced tetraparesis. Evidence-based spine-care journal, 4(1), 59-62. https://doi.org/10.1055/s-0033-1341599
Melloh, Markus, et al. "Vascularized fibula strut graft used in neurofibromatosis type 1-related kyphosis: a case of almost complete reversal of deformity-induced tetraparesis." Evidence-based spine-care journal vol. 4,1 (2013): 59-62. doi: https://doi.org/10.1055/s-0033-1341599
Melloh M, Hodgson B, Carstens A, Cornwall J. Vascularized fibula strut graft used in neurofibromatosis type 1-related kyphosis: a case of almost complete reversal of deformity-induced tetraparesis. Evid Based Spine Care J. 2013 Apr;4(1):59-62. doi: 10.1055/s-0033-1341599. PMID: 24436700; PMCID: PMC3699244.
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[Temporary pacemaker treatment. A study of the complications in a general medical department].

Ugeskrift for laeger

Carstens E, Heckscher T.
PMID: 5542316
Ugeskr Laeger. 1971 Jan 15;133(2):46-8.

No abstract available.

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Carstens E, Heckscher T. Midlertidig pacemakerbehandling. En undersøgelse af komplikationerne i en almenmedicinsk afdeling. [Temporary pacemaker treatment. A study of the complications in a general medical department]. Ugeskr Laeger. 1971;133(2):46-8
Carstens, E., & Heckscher, T. (1971). Midlertidig pacemakerbehandling. En undersøgelse af komplikationerne i en almenmedicinsk afdeling. [Temporary pacemaker treatment. A study of the complications in a general medical department]. Ugeskrift for laeger, 133(2), 46-8.
Carstens, E, and Heckscher, T. "Midlertidig pacemakerbehandling. En undersøgelse af komplikationerne i en almenmedicinsk afdeling." [Temporary pacemaker treatment. A study of the complications in a general medical department]. Ugeskrift for laeger vol. 133,2 (1971): 46-8.
Carstens E, Heckscher T. Midlertidig pacemakerbehandling. En undersøgelse af komplikationerne i en almenmedicinsk afdeling. [Temporary pacemaker treatment. A study of the complications in a general medical department]. Ugeskr Laeger. 1971 Jan 15;133(2):46-8. Danish. PMID: 5542316.
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Effects of prenatal source and level of dietary selenium on passive immunity and thermometabolism of newborn lambs.

Small ruminant research : the journal of the International Goat Association

Rock MJ, Kincaid RL, Carstens GE.
PMID: 11295395
Small Rumin Res. 2001 May;40(2):129-138. doi: 10.1016/s0921-4488(01)00167-5.

The objective of this study was to determine the effects of the amount and chemical form of Se fed to pregnant ewes on concentrations of thyroid hormones, Se in tissues, immunoglobulins (Ig) in serum, and measures of thermometabolism in...

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Rock MJ, Kincaid RL, Carstens GE. Effects of prenatal source and level of dietary selenium on passive immunity and thermometabolism of newborn lambs. Small Rumin Res. 2001;40(2):129-138doi: 10.1016/s0921-4488(01)00167-5.
Rock, M. J., Kincaid, R. L., & Carstens, G. E. (2001). Effects of prenatal source and level of dietary selenium on passive immunity and thermometabolism of newborn lambs. Small ruminant research : the journal of the International Goat Association, 40(2), 129-138. https://doi.org/10.1016/s0921-4488(01)00167-5
Rock, M J., et al. "Effects of prenatal source and level of dietary selenium on passive immunity and thermometabolism of newborn lambs." Small ruminant research : the journal of the International Goat Association vol. 40,2 (2001): 129-138. doi: https://doi.org/10.1016/s0921-4488(01)00167-5
Rock MJ, Kincaid RL, Carstens GE. Effects of prenatal source and level of dietary selenium on passive immunity and thermometabolism of newborn lambs. Small Rumin Res. 2001 May;40(2):129-138. doi: 10.1016/s0921-4488(01)00167-5. PMID: 11295395.
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Nucleotide sequence of the p10 polypeptide gene of Autographa californica nuclear polyhedrosis virus.

Virology

Kuzio J, Rohel DZ, Curry CJ, Krebs A, Carstens EB, Faulkner P.
PMID: 18639833
Virology. 1984 Dec;139(2):414-8. doi: 10.1016/0042-6822(84)90388-x.

A portion of the Autographa californica nuclear polyhedrosis virus genome lying within the EcoRI-P region of the physical map has been sequenced. Previous studies employing Northern blotting and in vitro translation had shown that this region encoded the gene...

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Kuzio J, Rohel DZ, Curry CJ, et al. Nucleotide sequence of the p10 polypeptide gene of Autographa californica nuclear polyhedrosis virus. Virology. 1984;139(2):414-8doi: 10.1016/0042-6822(84)90388-x.
Kuzio, J., Rohel, D. Z., Curry, C. J., Krebs, A., Carstens, E. B., & Faulkner, P. (1984). Nucleotide sequence of the p10 polypeptide gene of Autographa californica nuclear polyhedrosis virus. Virology, 139(2), 414-8. https://doi.org/10.1016/0042-6822(84)90388-x
Kuzio, J, et al. "Nucleotide sequence of the p10 polypeptide gene of Autographa californica nuclear polyhedrosis virus." Virology vol. 139,2 (1984): 414-8. doi: https://doi.org/10.1016/0042-6822(84)90388-x
Kuzio J, Rohel DZ, Curry CJ, Krebs A, Carstens EB, Faulkner P. Nucleotide sequence of the p10 polypeptide gene of Autographa californica nuclear polyhedrosis virus. Virology. 1984 Dec;139(2):414-8. doi: 10.1016/0042-6822(84)90388-x. PMID: 18639833.
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The -308 G/A polymorphism of the tumour necrosis factor-α gene modifies the association between saturated fat intake and serum total cholesterol levels in white South African women.

Genes & nutrition

Joffe YT, van der Merwe L, Collins M, Carstens M, Evans J, Lambert EV, Goedecke JH.
PMID: 21484162
Genes Nutr. 2011 Nov;6(4):353-9. doi: 10.1007/s12263-011-0213-2. Epub 2011 Mar 08.

This study explored interactions between dietary fat intake and the tumour necrosis factor-α gene (TNFA) -308 G/A polymorphism on serum lipids in white South African (SA) women. Normal-weight (N = 88) and obese (N = 60) white SA women...

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Joffe YT, van der Merwe L, Collins M, et al. The -308 G/A polymorphism of the tumour necrosis factor-α gene modifies the association between saturated fat intake and serum total cholesterol levels in white South African women. Genes Nutr. 2011;6(4):353-9doi: 10.1007/s12263-011-0213-2.
Joffe, Y. T., van der Merwe, L., Collins, M., Carstens, M., Evans, J., Lambert, E. V., & Goedecke, J. H. (2011). The -308 G/A polymorphism of the tumour necrosis factor-α gene modifies the association between saturated fat intake and serum total cholesterol levels in white South African women. Genes & nutrition, 6(4), 353-9. https://doi.org/10.1007/s12263-011-0213-2
Joffe, Yael T, et al. "The -308 G/A polymorphism of the tumour necrosis factor-α gene modifies the association between saturated fat intake and serum total cholesterol levels in white South African women." Genes & nutrition vol. 6,4 (2011): 353-9. doi: https://doi.org/10.1007/s12263-011-0213-2
Joffe YT, van der Merwe L, Collins M, Carstens M, Evans J, Lambert EV, Goedecke JH. The -308 G/A polymorphism of the tumour necrosis factor-α gene modifies the association between saturated fat intake and serum total cholesterol levels in white South African women. Genes Nutr. 2011 Nov;6(4):353-9. doi: 10.1007/s12263-011-0213-2. Epub 2011 Mar 08. PMID: 21484162; PMCID: PMC3197842.
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Tetramer guided, cell sorter assisted production of clinical grade autologous NY-ESO-1 specific CD8(+) T cells.

Journal for immunotherapy of cancer

Pollack SM, Jones RL, Farrar EA, Lai IP, Lee SM, Cao J, Pillarisetty VG, Hoch BL, Gullett A, Bleakley M, Conrad EU, Eary JF, Shibuya KC, Warren EH, Carstens JN, Heimfeld S, Riddell SR, Yee C.
PMID: 25317334
J Immunother Cancer. 2014 Oct 14;2(1):36. doi: 10.1186/s40425-014-0036-y. eCollection 2014.

BACKGROUND: Adoptive T cell therapy represents an attractive modality for the treatment of patients with cancer. Peripheral blood mononuclear cells have been used as a source of antigen specific T cells but the very low frequency of T cells...

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Pollack SM, Jones RL, Farrar EA, et al. Tetramer guided, cell sorter assisted production of clinical grade autologous NY-ESO-1 specific CD8(+) T cells. J Immunother Cancer. 2014;2(1):36doi: 10.1186/s40425-014-0036-y.
Pollack, S. M., Jones, R. L., Farrar, E. A., Lai, I. P., Lee, S. M., Cao, J., Pillarisetty, V. G., Hoch, B. L., Gullett, A., Bleakley, M., Conrad, E. U., Eary, J. F., Shibuya, K. C., Warren, E. H., Carstens, J. N., Heimfeld, S., Riddell, S. R., & Yee, C. (2014). Tetramer guided, cell sorter assisted production of clinical grade autologous NY-ESO-1 specific CD8(+) T cells. Journal for immunotherapy of cancer, 2(1), 36. https://doi.org/10.1186/s40425-014-0036-y
Pollack, Seth M, et al. "Tetramer guided, cell sorter assisted production of clinical grade autologous NY-ESO-1 specific CD8(+) T cells." Journal for immunotherapy of cancer vol. 2,1 (2014): 36. doi: https://doi.org/10.1186/s40425-014-0036-y
Pollack SM, Jones RL, Farrar EA, Lai IP, Lee SM, Cao J, Pillarisetty VG, Hoch BL, Gullett A, Bleakley M, Conrad EU, Eary JF, Shibuya KC, Warren EH, Carstens JN, Heimfeld S, Riddell SR, Yee C. Tetramer guided, cell sorter assisted production of clinical grade autologous NY-ESO-1 specific CD8(+) T cells. J Immunother Cancer. 2014 Oct 14;2(1):36. doi: 10.1186/s40425-014-0036-y. eCollection 2014. PMID: 25317334; PMCID: PMC4196009.
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Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival.

Cancer cell

Özdemir BC, Pentcheva-Hoang T, Carstens JL, Zheng X, Wu CC, Simpson TR, Laklai H, Sugimoto H, Kahlert C, Novitskiy SV, De Jesus-Acosta A, Sharma P, Heidari P, Mahmood U, Chin L, Moses HL, Weaver VM, Maitra A, Allison JP, LeBleu VS, Kalluri R.
PMID: 28843279
Cancer Cell. 2015 Dec 14;28(6):831-833. doi: 10.1016/j.ccell.2015.11.002. Epub 2015 Dec 14.

No abstract available.

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Özdemir BC, Pentcheva-Hoang T, Carstens JL, et al. Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival. Cancer Cell. 2015;28(6):831-833doi: 10.1016/j.ccell.2015.11.002.
Özdemir, B. C., Pentcheva-Hoang, T., Carstens, J. L., Zheng, X., Wu, C. C., Simpson, T. R., Laklai, H., Sugimoto, H., Kahlert, C., Novitskiy, S. V., De Jesus-Acosta, A., Sharma, P., Heidari, P., Mahmood, U., Chin, L., Moses, H. L., Weaver, V. M., Maitra, A., Allison, J. P., LeBleu, V. S., & Kalluri, R. (2015). Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival. Cancer cell, 28(6), 831-833. https://doi.org/10.1016/j.ccell.2015.11.002
Özdemir, Berna C, et al. "Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival." Cancer cell vol. 28,6 (2015): 831-833. doi: https://doi.org/10.1016/j.ccell.2015.11.002
Özdemir BC, Pentcheva-Hoang T, Carstens JL, Zheng X, Wu CC, Simpson TR, Laklai H, Sugimoto H, Kahlert C, Novitskiy SV, De Jesus-Acosta A, Sharma P, Heidari P, Mahmood U, Chin L, Moses HL, Weaver VM, Maitra A, Allison JP, LeBleu VS, Kalluri R. Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival. Cancer Cell. 2015 Dec 14;28(6):831-833. doi: 10.1016/j.ccell.2015.11.002. Epub 2015 Dec 14. PMID: 28843279.
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Risk assessment during preventive home visits among older people.

Journal of multidisciplinary healthcare

Fjell A, Cronfalk BS, Carstens N, Rongve A, Kvinge LMR, Seiger Å, Skaug K, Boström AM.
PMID: 30425507
J Multidiscip Healthc. 2018 Oct 24;11:609-620. doi: 10.2147/JMDH.S176646. eCollection 2018.

BACKGROUND: Preventive home visits (PHV) may contribute to identify risks and needs in older people, and thereby delay the onset of functional decline and illness, otherwise often followed by home care or admission to hospital or nursing homes. There...

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Fjell A, Cronfalk BS, Carstens N, et al. Risk assessment during preventive home visits among older people. J Multidiscip Healthc. 2018;11:609-620doi: 10.2147/JMDH.S176646.
Fjell, A., Cronfalk, B. S., Carstens, N., Rongve, A., Kvinge, L. M. R., Seiger, �. �., Skaug, K., & Boström, A. M. (2018). Risk assessment during preventive home visits among older people. Journal of multidisciplinary healthcare, 11609-620. https://doi.org/10.2147/JMDH.S176646
Fjell, Astrid, et al. "Risk assessment during preventive home visits among older people." Journal of multidisciplinary healthcare vol. 11 (2018): 609-620. doi: https://doi.org/10.2147/JMDH.S176646
Fjell A, Cronfalk BS, Carstens N, Rongve A, Kvinge LMR, Seiger Å, Skaug K, Boström AM. Risk assessment during preventive home visits among older people. J Multidiscip Healthc. 2018 Oct 24;11:609-620. doi: 10.2147/JMDH.S176646. eCollection 2018. PMID: 30425507; PMCID: PMC6205137.
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First report of .

Studies in mycology

Guarnaccia V, Groenewald JZ, Li H, Glienke C, Carstens E, Hattingh V, Fourie PH, Crous PW.
PMID: 28720979
Stud Mycol. 2017 Jun;87:161-185. doi: 10.1016/j.simyco.2017.05.003. Epub 2017 May 29.

The genus

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Guarnaccia V, Groenewald JZ, Li H, et al. First report of . Stud Mycol. 2017;87:161-185doi: 10.1016/j.simyco.2017.05.003.
Guarnaccia, V., Groenewald, J. Z., Li, H., Glienke, C., Carstens, E., Hattingh, V., Fourie, P. H., & Crous, P. W. (2017). First report of . Studies in mycology, 87161-185. https://doi.org/10.1016/j.simyco.2017.05.003
Guarnaccia, V, et al. "First report of ." Studies in mycology vol. 87 (2017): 161-185. doi: https://doi.org/10.1016/j.simyco.2017.05.003
Guarnaccia V, Groenewald JZ, Li H, Glienke C, Carstens E, Hattingh V, Fourie PH, Crous PW. First report of . Stud Mycol. 2017 Jun;87:161-185. doi: 10.1016/j.simyco.2017.05.003. Epub 2017 May 29. PMID: 28720979; PMCID: PMC5502700.
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Showing 1 to 12 of 141 entries