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Investing in Maine Research Infrastructure: Sustainable Forest Bioproducts

EPSCoR Research Infrastructure Improvement Program AND Program Evaluation

Pendse HP, Shaler S.
GSID: xvnnYEom-IEJ
M Eckardt, S Shaler, HP Pendse… - 2009 - digitalcommons.library.umaine.edu

Abstract The University of Maine, the University of Southern Maine, several baccalaureate institutions in the state, along with other federal, state and local public, private, and non-profit institutions will collaborate to create the Forest Bioproducts Research Institute (FBRI) at...

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Eckardt, M., Shaler, S., Pendse, H. P., van Heiningen, A. R., & Wagner, R. G. (2009). Investing in Maine Research Infrastructure: Sustainable Forest Bioproducts.
Eckardt, Michael, et al. "Investing in Maine Research Infrastructure: Sustainable Forest Bioproducts." (2009).
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Light-melt adhesive based on dynamic carbon frameworks in a columnar liquid-crystal phase.

Nature communications

Saito S, Nobusue S, Tsuzaka E, Yuan C, Mori C, Hara M, Seki T, Camacho C, Irle S, Yamaguchi S.
PMID: 27373592
Nat Commun. 2016 Jul 04;7:12094. doi: 10.1038/ncomms12094.

Liquid crystal (LC) provides a suitable platform to exploit structural motions of molecules in a condensed phase. Amplification of the structural changes enables a variety of technologies not only in LC displays but also in other applications. Until very...

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Saito S, Nobusue S, Tsuzaka E, et al. Light-melt adhesive based on dynamic carbon frameworks in a columnar liquid-crystal phase. Nat Commun. 2016;7:12094doi: 10.1038/ncomms12094.
Saito, S., Nobusue, S., Tsuzaka, E., Yuan, C., Mori, C., Hara, M., Seki, T., Camacho, C., Irle, S., & Yamaguchi, S. (2016). Light-melt adhesive based on dynamic carbon frameworks in a columnar liquid-crystal phase. Nature communications, 712094. https://doi.org/10.1038/ncomms12094
Saito, Shohei, et al. "Light-melt adhesive based on dynamic carbon frameworks in a columnar liquid-crystal phase." Nature communications vol. 7 (2016): 12094. doi: https://doi.org/10.1038/ncomms12094
Saito S, Nobusue S, Tsuzaka E, Yuan C, Mori C, Hara M, Seki T, Camacho C, Irle S, Yamaguchi S. Light-melt adhesive based on dynamic carbon frameworks in a columnar liquid-crystal phase. Nat Commun. 2016 Jul 04;7:12094. doi: 10.1038/ncomms12094. PMID: 27373592; PMCID: PMC4932191.
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Insights into carbon nanotube and graphene formation mechanisms from molecular simulations: a review.

Reports on progress in physics. Physical Society (Great Britain)

Page AJ, Ding F, Irle S, Morokuma K.
PMID: 25746411
Rep Prog Phys. 2015 Feb;78(3):036501. doi: 10.1088/0034-4885/78/3/036501. Epub 2015 Mar 09.

The discovery of carbon nanotubes (CNTs) and graphene over the last two decades has heralded a new era in physics, chemistry and nanotechnology. During this time, intense efforts have been made towards understanding the atomic-scale mechanisms by which these...

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Page AJ, Ding F, Irle S, et al. Insights into carbon nanotube and graphene formation mechanisms from molecular simulations: a review. Rep Prog Phys. 2015;78(3):036501doi: 10.1088/0034-4885/78/3/036501.
Page, A. J., Ding, F., Irle, S., & Morokuma, K. (2015). Insights into carbon nanotube and graphene formation mechanisms from molecular simulations: a review. Reports on progress in physics. Physical Society (Great Britain), 78(3), 036501. https://doi.org/10.1088/0034-4885/78/3/036501
Page, A J, et al. "Insights into carbon nanotube and graphene formation mechanisms from molecular simulations: a review." Reports on progress in physics. Physical Society (Great Britain) vol. 78,3 (2015): 036501. doi: https://doi.org/10.1088/0034-4885/78/3/036501
Page AJ, Ding F, Irle S, Morokuma K. Insights into carbon nanotube and graphene formation mechanisms from molecular simulations: a review. Rep Prog Phys. 2015 Feb;78(3):036501. doi: 10.1088/0034-4885/78/3/036501. Epub 2015 Mar 09. PMID: 25746411.
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A Macrocyclic Fluorophore Dimer with Flexible Linkers: Bright Excimer Emission with a Long Fluorescence Lifetime.

Angewandte Chemie (International ed. in English)

Osaki H, Chou CM, Taki M, Welke K, Yokogawa D, Irle S, Sato Y, Higashiyama T, Saito S, Fukazawa A, Yamaguchi S.
PMID: 27121201
Angew Chem Int Ed Engl. 2016 Jun 13;55(25):7131-5. doi: 10.1002/anie.201602239. Epub 2016 Apr 28.

Bright fluorescent molecules with long fluorescence lifetimes are important for the development of lifetime-based fluorescence imaging techniques. Herein, a molecular design is described for simultaneously attaining long fluorescence lifetime (τ) and high brightness (ΦF ×ɛ) in a system that...

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Osaki H, Chou CM, Taki M, et al. A Macrocyclic Fluorophore Dimer with Flexible Linkers: Bright Excimer Emission with a Long Fluorescence Lifetime. Angew Chem Int Ed Engl. 2016;55(25):7131-5doi: 10.1002/anie.201602239.
Osaki, H., Chou, C. M., Taki, M., Welke, K., Yokogawa, D., Irle, S., Sato, Y., Higashiyama, T., Saito, S., Fukazawa, A., & Yamaguchi, S. (2016). A Macrocyclic Fluorophore Dimer with Flexible Linkers: Bright Excimer Emission with a Long Fluorescence Lifetime. Angewandte Chemie (International ed. in English), 55(25), 7131-5. https://doi.org/10.1002/anie.201602239
Osaki, Hiroshi, et al. "A Macrocyclic Fluorophore Dimer with Flexible Linkers: Bright Excimer Emission with a Long Fluorescence Lifetime." Angewandte Chemie (International ed. in English) vol. 55,25 (2016): 7131-5. doi: https://doi.org/10.1002/anie.201602239
Osaki H, Chou CM, Taki M, Welke K, Yokogawa D, Irle S, Sato Y, Higashiyama T, Saito S, Fukazawa A, Yamaguchi S. A Macrocyclic Fluorophore Dimer with Flexible Linkers: Bright Excimer Emission with a Long Fluorescence Lifetime. Angew Chem Int Ed Engl. 2016 Jun 13;55(25):7131-5. doi: 10.1002/anie.201602239. Epub 2016 Apr 28. PMID: 27121201.
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Er.

Inorganic chemistry

Wang J, Zhao YY, Lee PH, Irle S.
PMID: 28537743
Inorg Chem. 2017 Jun 05;56(11):6576-6583. doi: 10.1021/acs.inorgchem.7b00695. Epub 2017 May 24.

Metallofullerenes with two erbium atoms encapsulated in IPR C

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Wang J, Zhao YY, Lee PH, et al. Er. Inorg Chem. 2017;56(11):6576-6583doi: 10.1021/acs.inorgchem.7b00695.
Wang, J., Zhao, Y. Y., Lee, P. H., & Irle, S. (2017). Er. Inorganic chemistry, 56(11), 6576-6583. https://doi.org/10.1021/acs.inorgchem.7b00695
Wang, Jian, et al. "Er." Inorganic chemistry vol. 56,11 (2017): 6576-6583. doi: https://doi.org/10.1021/acs.inorgchem.7b00695
Wang J, Zhao YY, Lee PH, Irle S. Er. Inorg Chem. 2017 Jun 05;56(11):6576-6583. doi: 10.1021/acs.inorgchem.7b00695. Epub 2017 May 24. PMID: 28537743.
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How Regrouping Alerts in Computerized Physician Order Entry Layout Influences Physicians' Prescription Behavior: Results of a Crossover Randomized Trial.

JMIR human factors

Wipfli R, Ehrler F, Bediang G, Bétrancourt M, Lovis C.
PMID: 27255612
JMIR Hum Factors. 2016 Jun 02;3(1):e15. doi: 10.2196/humanfactors.5320.

BACKGROUND: As demonstrated in several publications, low positive predictive value alerts in computerized physician order entry (CPOE) induce fatigue and may interrupt physicians unnecessarily during prescription of medication. Although it is difficult to increase the consideration of medical alerts...

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Wipfli R, Ehrler F, Bediang G, et al. How Regrouping Alerts in Computerized Physician Order Entry Layout Influences Physicians' Prescription Behavior: Results of a Crossover Randomized Trial. JMIR Hum Factors. 2016;3(1):e15doi: 10.2196/humanfactors.5320.
Wipfli, R., Ehrler, F., Bediang, G., Bétrancourt, M., & Lovis, C. (2016). How Regrouping Alerts in Computerized Physician Order Entry Layout Influences Physicians' Prescription Behavior: Results of a Crossover Randomized Trial. JMIR human factors, 3(1), e15. https://doi.org/10.2196/humanfactors.5320
Wipfli, Rolf, et al. "How Regrouping Alerts in Computerized Physician Order Entry Layout Influences Physicians' Prescription Behavior: Results of a Crossover Randomized Trial." JMIR human factors vol. 3,1 (2016): e15. doi: https://doi.org/10.2196/humanfactors.5320
Wipfli R, Ehrler F, Bediang G, Bétrancourt M, Lovis C. How Regrouping Alerts in Computerized Physician Order Entry Layout Influences Physicians' Prescription Behavior: Results of a Crossover Randomized Trial. JMIR Hum Factors. 2016 Jun 02;3(1):e15. doi: 10.2196/humanfactors.5320. PMID: 27255612; PMCID: PMC4911510.
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Size and Energy Level Tuning of Quantum Dot Solids via a Hybrid Ligand Complex.

The journal of physical chemistry letters

Böhm ML, Jellicoe TC, Rivett JP, Sadhanala A, Davis NJ, Morgenstern FS, Gödel KC, Govindasamy J, Benson CG, Greenham NC, Ehrler B.
PMID: 27120686
J Phys Chem Lett. 2015 Sep 03;6(17):3510-4. doi: 10.1021/acs.jpclett.5b01751. Epub 2015 Aug 25.

The performance of quantum dots (QDs) in optoelectronic devices suffers as a result of sub-bandgap states induced by the large fraction of atoms on the surface of QDs. Recent progress in passivating these surface states with thiol ligands and...

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Böhm ML, Jellicoe TC, Rivett JP, et al. Size and Energy Level Tuning of Quantum Dot Solids via a Hybrid Ligand Complex. J Phys Chem Lett. 2015;6(17):3510-4doi: 10.1021/acs.jpclett.5b01751.
Böhm, M. L., Jellicoe, T. C., Rivett, J. P., Sadhanala, A., Davis, N. J., Morgenstern, F. S., Gödel, K. C., Govindasamy, J., Benson, C. G., Greenham, N. C., & Ehrler, B. (2015). Size and Energy Level Tuning of Quantum Dot Solids via a Hybrid Ligand Complex. The journal of physical chemistry letters, 6(17), 3510-4. https://doi.org/10.1021/acs.jpclett.5b01751
Böhm, Marcus L, et al. "Size and Energy Level Tuning of Quantum Dot Solids via a Hybrid Ligand Complex." The journal of physical chemistry letters vol. 6,17 (2015): 3510-4. doi: https://doi.org/10.1021/acs.jpclett.5b01751
Böhm ML, Jellicoe TC, Rivett JP, Sadhanala A, Davis NJ, Morgenstern FS, Gödel KC, Govindasamy J, Benson CG, Greenham NC, Ehrler B. Size and Energy Level Tuning of Quantum Dot Solids via a Hybrid Ligand Complex. J Phys Chem Lett. 2015 Sep 03;6(17):3510-4. doi: 10.1021/acs.jpclett.5b01751. Epub 2015 Aug 25. PMID: 27120686.
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Isozyme analysis as a tool for introgression of Sinapis alba germ plasm into Brassica napus.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Ripley V, Thorpe M, Iler S, Mizier K, Beversdorf WD.
PMID: 24203201
Theor Appl Genet. 1992 Jul;84(3):403-10. doi: 10.1007/BF00229500.

Isozyme analysis of Brassica napus cv 'Topas' and CGRC5006 as well as of Sinapis alba cv 'Emergo' revealed significant polymorphism between the two species for the isozymes, aconitate hydratase, glucose phosphate isomerase, and diaphorase. F1 hybrids between B. napus...

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Ripley V, Thorpe M, Iler S, et al. Isozyme analysis as a tool for introgression of Sinapis alba germ plasm into Brassica napus. Theor Appl Genet. 1992;84(3):403-10doi: 10.1007/BF00229500.
Ripley, V., Thorpe, M., Iler, S., Mizier, K., & Beversdorf, W. D. (1992). Isozyme analysis as a tool for introgression of Sinapis alba germ plasm into Brassica napus. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 84(3), 403-10. https://doi.org/10.1007/BF00229500
Ripley, V, et al. "Isozyme analysis as a tool for introgression of Sinapis alba germ plasm into Brassica napus." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 84,3 (1992): 403-10. doi: https://doi.org/10.1007/BF00229500
Ripley V, Thorpe M, Iler S, Mizier K, Beversdorf WD. Isozyme analysis as a tool for introgression of Sinapis alba germ plasm into Brassica napus. Theor Appl Genet. 1992 Jul;84(3):403-10. doi: 10.1007/BF00229500. PMID: 24203201.
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Elucidating the structural basis of diphenyl ether derivatives as highly potent enoyl-ACP reductase inhibitors through molecular dynamics simulations and 3D-QSAR study.

Journal of molecular modeling

Kamsri P, Punkvang A, Saparpakorn P, Hannongbua S, Irle S, Pungpo P.
PMID: 24935113
J Mol Model. 2014 Jul;20(7):2319. doi: 10.1007/s00894-014-2319-0. Epub 2014 Jun 17.

Diphenyl ether derivatives are good candidates for anti-tuberculosis agents that display a promising potency for inhibition of InhA, an essential enoyl-acyl carrier protein (ACP) reductase involved in fatty acid biosynthesis pathways in Mycobacterium tuberculosis. In this work, key structural...

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Kamsri P, Punkvang A, Saparpakorn P, et al. Elucidating the structural basis of diphenyl ether derivatives as highly potent enoyl-ACP reductase inhibitors through molecular dynamics simulations and 3D-QSAR study. J Mol Model. 2014;20(7):2319doi: 10.1007/s00894-014-2319-0.
Kamsri, P., Punkvang, A., Saparpakorn, P., Hannongbua, S., Irle, S., & Pungpo, P. (2014). Elucidating the structural basis of diphenyl ether derivatives as highly potent enoyl-ACP reductase inhibitors through molecular dynamics simulations and 3D-QSAR study. Journal of molecular modeling, 20(7), 2319. https://doi.org/10.1007/s00894-014-2319-0
Kamsri, Pharit, et al. "Elucidating the structural basis of diphenyl ether derivatives as highly potent enoyl-ACP reductase inhibitors through molecular dynamics simulations and 3D-QSAR study." Journal of molecular modeling vol. 20,7 (2014): 2319. doi: https://doi.org/10.1007/s00894-014-2319-0
Kamsri P, Punkvang A, Saparpakorn P, Hannongbua S, Irle S, Pungpo P. Elucidating the structural basis of diphenyl ether derivatives as highly potent enoyl-ACP reductase inhibitors through molecular dynamics simulations and 3D-QSAR study. J Mol Model. 2014 Jul;20(7):2319. doi: 10.1007/s00894-014-2319-0. Epub 2014 Jun 17. PMID: 24935113.
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Theoretical Elucidation of Potential Enantioselectivity in a Pd-Catalyzed Aromatic C-H Coupling Reaction.

The Journal of organic chemistry

Nishimoto Y, Kondo H, Yamaguchi K, Yokogawa D, Yamaguchi J, Itami K, Irle S.
PMID: 28398736
J Org Chem. 2017 May 05;82(9):4900-4906. doi: 10.1021/acs.joc.6b02675. Epub 2017 Apr 17.

The mechanism of an aromatic C-H coupling reaction between heteroarenes and arylboronic acids using a Pd catalyst was theoretically and experimentally investigated. We identified the C-B transmetalation as the rate-determining step. The (S)-catalyst-reactant complex was found to be stabilized...

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Nishimoto Y, Kondo H, Yamaguchi K, et al. Theoretical Elucidation of Potential Enantioselectivity in a Pd-Catalyzed Aromatic C-H Coupling Reaction. J Org Chem. 2017;82(9):4900-4906doi: 10.1021/acs.joc.6b02675.
Nishimoto, Y., Kondo, H., Yamaguchi, K., Yokogawa, D., Yamaguchi, J., Itami, K., & Irle, S. (2017). Theoretical Elucidation of Potential Enantioselectivity in a Pd-Catalyzed Aromatic C-H Coupling Reaction. The Journal of organic chemistry, 82(9), 4900-4906. https://doi.org/10.1021/acs.joc.6b02675
Nishimoto, Yoshio, et al. "Theoretical Elucidation of Potential Enantioselectivity in a Pd-Catalyzed Aromatic C-H Coupling Reaction." The Journal of organic chemistry vol. 82,9 (2017): 4900-4906. doi: https://doi.org/10.1021/acs.joc.6b02675
Nishimoto Y, Kondo H, Yamaguchi K, Yokogawa D, Yamaguchi J, Itami K, Irle S. Theoretical Elucidation of Potential Enantioselectivity in a Pd-Catalyzed Aromatic C-H Coupling Reaction. J Org Chem. 2017 May 05;82(9):4900-4906. doi: 10.1021/acs.joc.6b02675. Epub 2017 Apr 17. PMID: 28398736.
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Allelic Expression Imbalance in the Human Retinal Transcriptome and Potential Impact on Inherited Retinal Diseases.

Genes

Llavona P, Pinelli M, Mutarelli M, Marwah VS, Schimpf-Linzenbold S, Thaler S, Yoeruek E, Vetter J, Kohl S, Wissinger B.
PMID: 29053642
Genes (Basel). 2017 Oct 20;8(10). doi: 10.3390/genes8100283.

Inherited retinal diseases (IRDs) are often associated with variable clinical expressivity (VE) and incomplete penetrance (IP). Underlying mechanisms may include environmental, epigenetic, and genetic factors.

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Llavona P, Pinelli M, Mutarelli M, et al. Allelic Expression Imbalance in the Human Retinal Transcriptome and Potential Impact on Inherited Retinal Diseases. Genes (Basel). 2017;8(10)doi: 10.3390/genes8100283.
Llavona, P., Pinelli, M., Mutarelli, M., Marwah, V. S., Schimpf-Linzenbold, S., Thaler, S., Yoeruek, E., Vetter, J., Kohl, S., & Wissinger, B. (2017). Allelic Expression Imbalance in the Human Retinal Transcriptome and Potential Impact on Inherited Retinal Diseases. Genes, 8(10), . https://doi.org/10.3390/genes8100283
Llavona, Pablo, et al. "Allelic Expression Imbalance in the Human Retinal Transcriptome and Potential Impact on Inherited Retinal Diseases." Genes vol. 8,10 (2017). doi: https://doi.org/10.3390/genes8100283
Llavona P, Pinelli M, Mutarelli M, Marwah VS, Schimpf-Linzenbold S, Thaler S, Yoeruek E, Vetter J, Kohl S, Wissinger B. Allelic Expression Imbalance in the Human Retinal Transcriptome and Potential Impact on Inherited Retinal Diseases. Genes (Basel). 2017 Oct 20;8(10). doi: 10.3390/genes8100283. PMID: 29053642; PMCID: PMC5664133.
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Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics.

PLoS computational biology

Fumanelli L, Ajelli M, Merler S, Ferguson NM, Cauchemez S.
PMID: 26796333
PLoS Comput Biol. 2016 Jan 21;12(1):e1004681. doi: 10.1371/journal.pcbi.1004681. eCollection 2016 Jan.

School closure policies are among the non-pharmaceutical measures taken into consideration to mitigate influenza epidemics and pandemics spread. However, a systematic review of the effectiveness of alternative closure policies has yet to emerge. Here we perform a model-based analysis...

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Fumanelli L, Ajelli M, Merler S, et al. Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. PLoS Comput Biol. 2016;12(1):e1004681doi: 10.1371/journal.pcbi.1004681.
Fumanelli, L., Ajelli, M., Merler, S., Ferguson, N. M., & Cauchemez, S. (2016). Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. PLoS computational biology, 12(1), e1004681. https://doi.org/10.1371/journal.pcbi.1004681
Fumanelli, Laura, et al. "Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics." PLoS computational biology vol. 12,1 (2016): e1004681. doi: https://doi.org/10.1371/journal.pcbi.1004681
Fumanelli L, Ajelli M, Merler S, Ferguson NM, Cauchemez S. Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. PLoS Comput Biol. 2016 Jan 21;12(1):e1004681. doi: 10.1371/journal.pcbi.1004681. eCollection 2016 Jan. PMID: 26796333; PMCID: PMC4721867.
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Showing 1 to 12 of 365 entries