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Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46

pipeline programs

Christoffer C, Terashi G, Shin WH.
GSID: gCcSiBVH7EYJ
C Christoffer, G Terashi, WH Shin… - Proteins: Structure …, 2020 - Wiley Online Library

… protein docking prediction pipeline of our group and the results for Critical Assessment of Prediction of Interactions (CAPRI) rounds 38-46. The pipeline integrates programs developed in our group as well as other existing scoring functions. The core of...

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Christoffer, C., Terashi, G., Shin, W. H., Aderinwale, T., Maddhuri Venkata Subramaniya, S. R., Peterson, L., ... & Kihara, D. (2020). Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46. Proteins: Structure, Function, and Bioinformatics, 88(8), 948-961.
Christoffer, Charles, et al. "Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46." Proteins: Structure, Function, and Bioinformatics 88.8 (2020): 948-961.
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A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics.

Korean circulation journal

Min SY, Shin JH, Lee SW, Doo E, Kim BK, Won YW, Park HC, Choi SI, Kim SG.
PMID: 23508451
Korean Circ J. 2013 Feb;43(2):132-4. doi: 10.4070/kcj.2013.43.2.132. Epub 2013 Feb 28.

Deep vein thrombosis (DVT) is a rare but potentially serious complication of coronary angiography (CAG) affecting just under 5 in 10000 patients. Most of the cases regarding DVT after CAG reported in the literature were associated with procedure-related vascular...

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Min SY, Shin JH, Lee SW, et al. A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics. Korean Circ J. 2013;43(2):132-4doi: 10.4070/kcj.2013.43.2.132.
Min, S. Y., Shin, J. H., Lee, S. W., Doo, E., Kim, B. K., Won, Y. W., Park, H. C., Choi, S. I., & Kim, S. G. (2013). A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics. Korean circulation journal, 43(2), 132-4. https://doi.org/10.4070/kcj.2013.43.2.132
Min, Seung Yeon, et al. "A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics." Korean circulation journal vol. 43,2 (2013): 132-4. doi: https://doi.org/10.4070/kcj.2013.43.2.132
Min SY, Shin JH, Lee SW, Doo E, Kim BK, Won YW, Park HC, Choi SI, Kim SG. A case of deep vein thrombosis after coronary angiography in a patient using antidepressants and anxiolytics. Korean Circ J. 2013 Feb;43(2):132-4. doi: 10.4070/kcj.2013.43.2.132. Epub 2013 Feb 28. PMID: 23508451; PMCID: PMC3596662.
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Morphology of nematic and smectic vesicles.

Proceedings of the National Academy of Sciences of the United States of America

Xing X, Shin H, Bowick MJ, Yao Z, Jia L, Li MH.
PMID: 22431595
Proc Natl Acad Sci U S A. 2012 Apr 03;109(14):5202-6. doi: 10.1073/pnas.1115684109. Epub 2012 Mar 19.

Recent experiments on vesicles formed from block copolymers with liquid-crystalline side chains reveal a rich variety of vesicle morphologies. The additional internal order ("structure") developed by these self-assembled block copolymer vesicles can lead to significantly deformed vesicles as a...

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Xing X, Shin H, Bowick MJ, et al. Morphology of nematic and smectic vesicles. Proc Natl Acad Sci U S A. 2012;109(14):5202-6doi: 10.1073/pnas.1115684109.
Xing, X., Shin, H., Bowick, M. J., Yao, Z., Jia, L., & Li, M. H. (2012). Morphology of nematic and smectic vesicles. Proceedings of the National Academy of Sciences of the United States of America, 109(14), 5202-6. https://doi.org/10.1073/pnas.1115684109
Xing, Xiangjun, et al. "Morphology of nematic and smectic vesicles." Proceedings of the National Academy of Sciences of the United States of America vol. 109,14 (2012): 5202-6. doi: https://doi.org/10.1073/pnas.1115684109
Xing X, Shin H, Bowick MJ, Yao Z, Jia L, Li MH. Morphology of nematic and smectic vesicles. Proc Natl Acad Sci U S A. 2012 Apr 03;109(14):5202-6. doi: 10.1073/pnas.1115684109. Epub 2012 Mar 19. PMID: 22431595; PMCID: PMC3325697.
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Juvenile polyp and colonoscopic polypectomy in childhood.

Pediatric gastroenterology, hepatology & nutrition

Lee BG, Shin SH, Lee YA, Wi JH, Lee YJ, Park JH.
PMID: 24010095
Pediatr Gastroenterol Hepatol Nutr. 2012 Dec;15(4):250-5. doi: 10.5223/pghn.2012.15.4.250. Epub 2012 Dec 31.

PURPOSE: This study aimed to evaluate the clinical features of juvenile polyp and the usefulness of polypectomy with entire colonoscopy in children.METHODS: We retrospectively reviewed the medical records of 83 children who were diagnosed with having juvenile polyps.RESULTS: The...

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Lee BG, Shin SH, Lee YA, et al. Juvenile polyp and colonoscopic polypectomy in childhood. Pediatr Gastroenterol Hepatol Nutr. 2012;15(4):250-5doi: 10.5223/pghn.2012.15.4.250.
Lee, B. G., Shin, S. H., Lee, Y. A., Wi, J. H., Lee, Y. J., & Park, J. H. (2012). Juvenile polyp and colonoscopic polypectomy in childhood. Pediatric gastroenterology, hepatology & nutrition, 15(4), 250-5. https://doi.org/10.5223/pghn.2012.15.4.250
Lee, Byung Gee, et al. "Juvenile polyp and colonoscopic polypectomy in childhood." Pediatric gastroenterology, hepatology & nutrition vol. 15,4 (2012): 250-5. doi: https://doi.org/10.5223/pghn.2012.15.4.250
Lee BG, Shin SH, Lee YA, Wi JH, Lee YJ, Park JH. Juvenile polyp and colonoscopic polypectomy in childhood. Pediatr Gastroenterol Hepatol Nutr. 2012 Dec;15(4):250-5. doi: 10.5223/pghn.2012.15.4.250. Epub 2012 Dec 31. PMID: 24010095; PMCID: PMC3746052.
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Synthesis and characterization of new silafluorene-based copolymers for polymer solar cells.

Journal of nanoscience and nanotechnology

Bathula CD, Park SJ, Lee JC, Shin WS, Moon SJ, Lee SK.
PMID: 25936045
J Nanosci Nanotechnol. 2014 Aug;14(8):6002-7. doi: 10.1166/jnn.2014.8443.

A series of silafluorene-based copolymers, poly[9-(2-ethylhexyl)-9-dodecyl-silafluorene-2,7-diyl-alt-5,5-(4',7'-di-2-thienyl-2',1',3'-benzothiadiazole)] (P1), poly[9-(2-ethylhexyl)-9-dodecyl-silafluorene-2,7-diyl-alt-2,5-bis-(thiophene-2-yl)thiazolo [5,4-d]thiazole] (P2), and poly[9-(2-ethylhexyl)-9-dodecyl-silafluorene-2,7-diyl-alt-5,5-(5',8'-di-2-thienyl-2,3-bis(4-octyloxyl)phenyl)quinoxaline] (P3), were synthesized and used as donor materials in polymer solar cells (PSCs). The optical, electrochemical, and photovoltaic properties of the copolymers were investigated. The results indicate...

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Bathula CD, Park SJ, Lee JC, et al. Synthesis and characterization of new silafluorene-based copolymers for polymer solar cells. J Nanosci Nanotechnol. 2014;14(8):6002-7doi: 10.1166/jnn.2014.8443.
Bathula, C. D., Park, S. J., Lee, J. C., Shin, W. S., Moon, S. J., & Lee, S. K. (2014). Synthesis and characterization of new silafluorene-based copolymers for polymer solar cells. Journal of nanoscience and nanotechnology, 14(8), 6002-7. https://doi.org/10.1166/jnn.2014.8443
Bathula, Chinna D, et al. "Synthesis and characterization of new silafluorene-based copolymers for polymer solar cells." Journal of nanoscience and nanotechnology vol. 14,8 (2014): 6002-7. doi: https://doi.org/10.1166/jnn.2014.8443
Bathula CD, Park SJ, Lee JC, Shin WS, Moon SJ, Lee SK. Synthesis and characterization of new silafluorene-based copolymers for polymer solar cells. J Nanosci Nanotechnol. 2014 Aug;14(8):6002-7. doi: 10.1166/jnn.2014.8443. PMID: 25936045.
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Structural and optical properties of the In(x)Ga(1-x)As nanowires grown on SiO2 via vapor-liquid-solid method.

Journal of nanoscience and nanotechnology

Shin HW, Shin JC, Kim DY, Choi WJ, Choe JW.
PMID: 25936106
J Nanosci Nanotechnol. 2014 Aug;14(8):6297-300. doi: 10.1166/jnn.2014.8301.

We report the crystal growth of the In(x)Ga(1-x)As nanowires (NWs) on SiO2 substrate using metal organic chemical vapor deposition. Au nanoparticles which are disintegrated from thin Au film have been used as a catalyst for the vapor-liquid-solid growth. Electron...

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Shin HW, Shin JC, Kim DY, et al. Structural and optical properties of the In(x)Ga(1-x)As nanowires grown on SiO2 via vapor-liquid-solid method. J Nanosci Nanotechnol. 2014;14(8):6297-300doi: 10.1166/jnn.2014.8301.
Shin, H. W., Shin, J. C., Kim, D. Y., Choi, W. J., & Choe, J. W. (2014). Structural and optical properties of the In(x)Ga(1-x)As nanowires grown on SiO2 via vapor-liquid-solid method. Journal of nanoscience and nanotechnology, 14(8), 6297-300. https://doi.org/10.1166/jnn.2014.8301
Shin, Hyun Wook, et al. "Structural and optical properties of the In(x)Ga(1-x)As nanowires grown on SiO2 via vapor-liquid-solid method." Journal of nanoscience and nanotechnology vol. 14,8 (2014): 6297-300. doi: https://doi.org/10.1166/jnn.2014.8301
Shin HW, Shin JC, Kim DY, Choi WJ, Choe JW. Structural and optical properties of the In(x)Ga(1-x)As nanowires grown on SiO2 via vapor-liquid-solid method. J Nanosci Nanotechnol. 2014 Aug;14(8):6297-300. doi: 10.1166/jnn.2014.8301. PMID: 25936106.
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Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion.

Biomaterials research

Choi WY, Kim HE, Moon YW, Shin KH, Koh YH.
PMID: 26331085
Biomater Res. 2015 Jul 03;19:16. doi: 10.1186/s40824-015-0037-z. eCollection 2015.

BACKGROUND: Calcium phosphate (CaP) ceramics are one of the most valuable biomaterials for uses as the bone scaffold owing to their outstanding biocompatability, bioactivity, and biodegradation nature. In particular, these materials with an open porous structure can stimulate bone...

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Choi WY, Kim HE, Moon YW, et al. Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion. Biomater Res. 2015;19:16doi: 10.1186/s40824-015-0037-z.
Choi, W. Y., Kim, H. E., Moon, Y. W., Shin, K. H., & Koh, Y. H. (2015). Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion. Biomaterials research, 1916. https://doi.org/10.1186/s40824-015-0037-z
Choi, Won-Young, et al. "Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion." Biomaterials research vol. 19 (2015): 16. doi: https://doi.org/10.1186/s40824-015-0037-z
Choi WY, Kim HE, Moon YW, Shin KH, Koh YH. Production of porous Calcium Phosphate (CaP) ceramics with aligned pores using ceramic/camphene-based co-extrusion. Biomater Res. 2015 Jul 03;19:16. doi: 10.1186/s40824-015-0037-z. eCollection 2015. PMID: 26331085; PMCID: PMC4552288.
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Persicarin isolated from .

Experimental and therapeutic medicine

Lee JY, Kim MY, Shin SH, Shin MR, Kwon OJ, Kim TH, Park CH, Noh JS, Rhee MH, Roh SS.
PMID: 28413457
Exp Ther Med. 2017 Apr;13(4):1194-1202. doi: 10.3892/etm.2017.4113. Epub 2017 Feb 10.

Persicarin is one of the major components of the

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Lee JY, Kim MY, Shin SH, et al. Persicarin isolated from . Exp Ther Med. 2017;13(4):1194-1202doi: 10.3892/etm.2017.4113.
Lee, J. Y., Kim, M. Y., Shin, S. H., Shin, M. R., Kwon, O. J., Kim, T. H., Park, C. H., Noh, J. S., Rhee, M. H., & Roh, S. S. (2017). Persicarin isolated from . Experimental and therapeutic medicine, 13(4), 1194-1202. https://doi.org/10.3892/etm.2017.4113
Lee, Joo Young, et al. "Persicarin isolated from ." Experimental and therapeutic medicine vol. 13,4 (2017): 1194-1202. doi: https://doi.org/10.3892/etm.2017.4113
Lee JY, Kim MY, Shin SH, Shin MR, Kwon OJ, Kim TH, Park CH, Noh JS, Rhee MH, Roh SS. Persicarin isolated from . Exp Ther Med. 2017 Apr;13(4):1194-1202. doi: 10.3892/etm.2017.4113. Epub 2017 Feb 10. PMID: 28413457; PMCID: PMC5377288.
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Gut microbiota and physiologic bowel .

EJNMMI research

Kang JY, Kim HN, Chang Y, Yun Y, Ryu S, Shin H, Kim HL.
PMID: 28861740
EJNMMI Res. 2017 Aug 31;7(1):72. doi: 10.1186/s13550-017-0318-8.

BACKGROUND: We investigated the association between physiologic bowel FDG uptake and gut microbiota. FDG uptake in the normal large and small intestine is widely variable both in distribution and intensity. The etiology of physiologic bowel RESULTS: We included 63...

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Kang JY, Kim HN, Chang Y, et al. Gut microbiota and physiologic bowel . EJNMMI Res. 2017;7(1):72doi: 10.1186/s13550-017-0318-8.
Kang, J. Y., Kim, H. N., Chang, Y., Yun, Y., Ryu, S., Shin, H., & Kim, H. L. (2017). Gut microbiota and physiologic bowel . EJNMMI research, 7(1), 72. https://doi.org/10.1186/s13550-017-0318-8
Kang, Ji Yeon, et al. "Gut microbiota and physiologic bowel ." EJNMMI research vol. 7,1 (2017): 72. doi: https://doi.org/10.1186/s13550-017-0318-8
Kang JY, Kim HN, Chang Y, Yun Y, Ryu S, Shin H, Kim HL. Gut microbiota and physiologic bowel . EJNMMI Res. 2017 Aug 31;7(1):72. doi: 10.1186/s13550-017-0318-8. PMID: 28861740; PMCID: PMC5578947.
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Sky-Blue Phosphorescent OLEDs with 34.1% External Quantum Efficiency Using a Low Refractive Index Electron Transporting Layer.

Advanced materials (Deerfield Beach, Fla.)

Shin H, Lee JH, Moon CK, Huh JS, Sim B, Kim JJ.
PMID: 27060851
Adv Mater. 2016 Jun;28(24):4920-5. doi: 10.1002/adma.201506065. Epub 2016 Apr 09.

Blue-phosphorescent organic light-emitting diodes (OLEDs) with 34.1% external quantum efficiency (EQE) and 79.6 lm W(-1) are demonstrated using a hole-transporting layer and electron-transporting layer with low refractive index values. Using optical simulations, it is predicted that outcoupling efficiencies with...

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Shin H, Lee JH, Moon CK, et al. Sky-Blue Phosphorescent OLEDs with 34.1% External Quantum Efficiency Using a Low Refractive Index Electron Transporting Layer. Adv Mater. 2016;28(24):4920-5doi: 10.1002/adma.201506065.
Shin, H., Lee, J. H., Moon, C. K., Huh, J. S., Sim, B., & Kim, J. J. (2016). Sky-Blue Phosphorescent OLEDs with 34.1% External Quantum Efficiency Using a Low Refractive Index Electron Transporting Layer. Advanced materials (Deerfield Beach, Fla.), 28(24), 4920-5. https://doi.org/10.1002/adma.201506065
Shin, Hyun, et al. "Sky-Blue Phosphorescent OLEDs with 34.1% External Quantum Efficiency Using a Low Refractive Index Electron Transporting Layer." Advanced materials (Deerfield Beach, Fla.) vol. 28,24 (2016): 4920-5. doi: https://doi.org/10.1002/adma.201506065
Shin H, Lee JH, Moon CK, Huh JS, Sim B, Kim JJ. Sky-Blue Phosphorescent OLEDs with 34.1% External Quantum Efficiency Using a Low Refractive Index Electron Transporting Layer. Adv Mater. 2016 Jun;28(24):4920-5. doi: 10.1002/adma.201506065. Epub 2016 Apr 09. PMID: 27060851.
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Treatment of Propriospinal Myoclonus at Sleep Onset.

Journal of clinical neurology (Seoul, Korea)

Byun JI, Lee D, Rhee HY, Shin WC.
PMID: 28516739
J Clin Neurol. 2017 Jul;13(3):293-295. doi: 10.3988/jcn.2017.13.3.293. Epub 2017 Apr 06.

No abstract available.

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Byun JI, Lee D, Rhee HY, et al. Treatment of Propriospinal Myoclonus at Sleep Onset. J Clin Neurol. 2017;13(3):293-295doi: 10.3988/jcn.2017.13.3.293.
Byun, J. I., Lee, D., Rhee, H. Y., & Shin, W. C. (2017). Treatment of Propriospinal Myoclonus at Sleep Onset. Journal of clinical neurology (Seoul, Korea), 13(3), 293-295. https://doi.org/10.3988/jcn.2017.13.3.293
Byun, Jung Ick, et al. "Treatment of Propriospinal Myoclonus at Sleep Onset." Journal of clinical neurology (Seoul, Korea) vol. 13,3 (2017): 293-295. doi: https://doi.org/10.3988/jcn.2017.13.3.293
Byun JI, Lee D, Rhee HY, Shin WC. Treatment of Propriospinal Myoclonus at Sleep Onset. J Clin Neurol. 2017 Jul;13(3):293-295. doi: 10.3988/jcn.2017.13.3.293. Epub 2017 Apr 06. PMID: 28516739; PMCID: PMC5532327.
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Blockwise PPG Enhancement Based on Time-Variant Zero-Phase Harmonic Notch Filtering.

Sensors (Basel, Switzerland)

Park C, Shin H, Lee B.
PMID: 28420086
Sensors (Basel). 2017 Apr 14;17(4). doi: 10.3390/s17040860.

So far, many approaches have been developed for motion artifact (MA) reduction from photoplethysmogram (PPG). Specifically, single-input MA reduction methods are useful to apply wearable and mobile healthcare systems because of their low hardware costs and simplicity. However, most...

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Park C, Shin H, Lee B. Blockwise PPG Enhancement Based on Time-Variant Zero-Phase Harmonic Notch Filtering. Sensors (Basel). 2017;17(4)doi: 10.3390/s17040860.
Park, C., Shin, H., & Lee, B. (2017). Blockwise PPG Enhancement Based on Time-Variant Zero-Phase Harmonic Notch Filtering. Sensors (Basel, Switzerland), 17(4), . https://doi.org/10.3390/s17040860
Park, Chanki, et al. "Blockwise PPG Enhancement Based on Time-Variant Zero-Phase Harmonic Notch Filtering." Sensors (Basel, Switzerland) vol. 17,4 (2017). doi: https://doi.org/10.3390/s17040860
Park C, Shin H, Lee B. Blockwise PPG Enhancement Based on Time-Variant Zero-Phase Harmonic Notch Filtering. Sensors (Basel). 2017 Apr 14;17(4). doi: 10.3390/s17040860. PMID: 28420086; PMCID: PMC5424737.
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Showing 1 to 12 of 4215 entries