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Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome.

Genome announcements

Drees KP, Palmer JM, Sebra R, Lorch JM, Chen C, Wu CC, Bok JW, Keller NP, Blehert DS, Cuomo CA, Lindner DL, Foster JT.
PMID: 27365344
Genome Announc. 2016 Jun 30;4(3). doi: 10.1128/genomeA.00445-16.

White-nose syndrome has recently emerged as one of the most devastating wildlife diseases recorded, causing widespread mortality in numerous bat species throughout eastern North America. Here, we present an improved reference genome of the fungal pathogen Pseudogymnoascus destructans for...

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Drees KP, Palmer JM, Sebra R, et al. Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome. Genome Announc. 2016;4(3)doi: 10.1128/genomeA.00445-16.
Drees, K. P., Palmer, J. M., Sebra, R., Lorch, J. M., Chen, C., Wu, C. C., Bok, J. W., Keller, N. P., Blehert, D. S., Cuomo, C. A., Lindner, D. L., & Foster, J. T. (2016). Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome. Genome announcements, 4(3), . https://doi.org/10.1128/genomeA.00445-16
Drees, Kevin P, et al. "Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome." Genome announcements vol. 4,3 (2016). doi: https://doi.org/10.1128/genomeA.00445-16
Drees KP, Palmer JM, Sebra R, Lorch JM, Chen C, Wu CC, Bok JW, Keller NP, Blehert DS, Cuomo CA, Lindner DL, Foster JT. Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome. Genome Announc. 2016 Jun 30;4(3). doi: 10.1128/genomeA.00445-16. PMID: 27365344; PMCID: PMC4929507.
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Intrinsic valley polarization of magnetic VSe.

Journal of physics. Condensed matter : an Institute of Physics journal

Liu J, Hou WJ, Cheng C, Fu HX, Sun JT, Meng S.
PMID: 28516897
J Phys Condens Matter. 2017 Jun 28;29(25):255501. doi: 10.1088/1361-648X/aa6e6e. Epub 2017 May 18.

Intrinsic valley polarization can be obtained in VSe

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Liu J, Hou WJ, Cheng C, et al. Intrinsic valley polarization of magnetic VSe. J Phys Condens Matter. 2017;29(25):255501doi: 10.1088/1361-648X/aa6e6e.
Liu, J., Hou, W. J., Cheng, C., Fu, H. X., Sun, J. T., & Meng, S. (2017). Intrinsic valley polarization of magnetic VSe. Journal of physics. Condensed matter : an Institute of Physics journal, 29(25), 255501. https://doi.org/10.1088/1361-648X/aa6e6e
Liu, Jian, et al. "Intrinsic valley polarization of magnetic VSe." Journal of physics. Condensed matter : an Institute of Physics journal vol. 29,25 (2017): 255501. doi: https://doi.org/10.1088/1361-648X/aa6e6e
Liu J, Hou WJ, Cheng C, Fu HX, Sun JT, Meng S. Intrinsic valley polarization of magnetic VSe. J Phys Condens Matter. 2017 Jun 28;29(25):255501. doi: 10.1088/1361-648X/aa6e6e. Epub 2017 May 18. PMID: 28516897.
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Down-Regulation of Serum High-Mobility Group Box 1 Protein in Patients with Pulmonary Tuberculosis and Nontuberculous Mycobacterial Lung Disease.

Tuberculosis and respiratory diseases

Kim SY, Koh WJ, Park HY, Jeon K, Lee SY, Yim JJ, Shin SJ.
PMID: 28416955
Tuberc Respir Dis (Seoul). 2017 Apr;80(2):153-158. doi: 10.4046/trd.2017.80.2.153. Epub 2017 Mar 31.

BACKGROUND: Recently, increased levels of high-mobility group box 1 protein (HMGB1) have been identified in various inflammatory conditions and infections. However, no studies have evaluated the HMGB1 level in nontuberculous mycobacterial (NTM) lung disease, and compared it to mycobacterial...

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Kim SY, Koh WJ, Park HY, et al. Down-Regulation of Serum High-Mobility Group Box 1 Protein in Patients with Pulmonary Tuberculosis and Nontuberculous Mycobacterial Lung Disease. Tuberc Respir Dis (Seoul). 2017;80(2):153-158doi: 10.4046/trd.2017.80.2.153.
Kim, S. Y., Koh, W. J., Park, H. Y., Jeon, K., Lee, S. Y., Yim, J. J., & Shin, S. J. (2017). Down-Regulation of Serum High-Mobility Group Box 1 Protein in Patients with Pulmonary Tuberculosis and Nontuberculous Mycobacterial Lung Disease. Tuberculosis and respiratory diseases, 80(2), 153-158. https://doi.org/10.4046/trd.2017.80.2.153
Kim, Su-Young, et al. "Down-Regulation of Serum High-Mobility Group Box 1 Protein in Patients with Pulmonary Tuberculosis and Nontuberculous Mycobacterial Lung Disease." Tuberculosis and respiratory diseases vol. 80,2 (2017): 153-158. doi: https://doi.org/10.4046/trd.2017.80.2.153
Kim SY, Koh WJ, Park HY, Jeon K, Lee SY, Yim JJ, Shin SJ. Down-Regulation of Serum High-Mobility Group Box 1 Protein in Patients with Pulmonary Tuberculosis and Nontuberculous Mycobacterial Lung Disease. Tuberc Respir Dis (Seoul). 2017 Apr;80(2):153-158. doi: 10.4046/trd.2017.80.2.153. Epub 2017 Mar 31. PMID: 28416955; PMCID: PMC5392486.
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Transition between bulk and surface refractive index sensitivity of micro-cavity in-line Mach-Zehnder interferometer induced by thin film deposition.

Optics express

Śmietana M, Janik M, Koba M, Bock WJ.
PMID: 29041272
Opt Express. 2017 Oct 16;25(21):26118-26123. doi: 10.1364/OE.25.026118.

In this work we discuss the refractive index (RI) sensitivity of a micro-cavity in-line Mach-Zehnder interferometer in the form of a cylindrical hole (40-50 μm in diameter) fabricated in a standard single-mode optical fiber using a femtosecond laser. The...

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Śmietana M, Janik M, Koba M, et al. Transition between bulk and surface refractive index sensitivity of micro-cavity in-line Mach-Zehnder interferometer induced by thin film deposition. Opt Express. 2017;25(21):26118-26123doi: 10.1364/OE.25.026118.
Śmietana, M., Janik, M., Koba, M., & Bock, W. J. (2017). Transition between bulk and surface refractive index sensitivity of micro-cavity in-line Mach-Zehnder interferometer induced by thin film deposition. Optics express, 25(21), 26118-26123. https://doi.org/10.1364/OE.25.026118
Śmietana, Mateusz, et al. "Transition between bulk and surface refractive index sensitivity of micro-cavity in-line Mach-Zehnder interferometer induced by thin film deposition." Optics express vol. 25,21 (2017): 26118-26123. doi: https://doi.org/10.1364/OE.25.026118
Śmietana M, Janik M, Koba M, Bock WJ. Transition between bulk and surface refractive index sensitivity of micro-cavity in-line Mach-Zehnder interferometer induced by thin film deposition. Opt Express. 2017 Oct 16;25(21):26118-26123. doi: 10.1364/OE.25.026118. PMID: 29041272.
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Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings.

Biomedical optics express

Brzozowska E, Koba M, Śmietana M, Górska S, Janik M, Gamian A, Bock WJ.
PMID: 27231592
Biomed Opt Express. 2016 Feb 09;7(3):829-40. doi: 10.1364/BOE.7.000829. eCollection 2016 Mar 01.

This paper presents a novel application of a highly sensitive sensor based on long-period gratings (LPGs) coated with T4 bacteriophage adhesin for Gram-negative bacteria detection. We show here, that the sensor evidently recognizes Escherichia coli K-12 (PCM2560), whereas in...

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Brzozowska E, Koba M, Śmietana M, et al. Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings. Biomed Opt Express. 2016;7(3):829-40doi: 10.1364/BOE.7.000829.
Brzozowska, E., Koba, M., Śmietana, M., Górska, S., Janik, M., Gamian, A., & Bock, W. J. (2016). Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings. Biomedical optics express, 7(3), 829-40. https://doi.org/10.1364/BOE.7.000829
Brzozowska, Ewa, et al. "Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings." Biomedical optics express vol. 7,3 (2016): 829-40. doi: https://doi.org/10.1364/BOE.7.000829
Brzozowska E, Koba M, Śmietana M, Górska S, Janik M, Gamian A, Bock WJ. Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings. Biomed Opt Express. 2016 Feb 09;7(3):829-40. doi: 10.1364/BOE.7.000829. eCollection 2016 Mar 01. PMID: 27231592; PMCID: PMC4866459.
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Wafer-scale growth of single-crystal monolayer graphene on reusable hydrogen-terminated germanium.

Science (New York, N.Y.)

Lee JH, Lee EK, Joo WJ, Jang Y, Kim BS, Lim JY, Choi SH, Ahn SJ, Ahn JR, Park MH, Yang CW, Choi BL, Hwang SW, Whang D.
PMID: 24700471
Science. 2014 Apr 18;344(6181):286-9. doi: 10.1126/science.1252268. Epub 2014 Apr 03.

The uniform growth of single-crystal graphene over wafer-scale areas remains a challenge in the commercial-level manufacturability of various electronic, photonic, mechanical, and other devices based on graphene. Here, we describe wafer-scale growth of wrinkle-free single-crystal monolayer graphene on silicon...

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Lee JH, Lee EK, Joo WJ, et al. Wafer-scale growth of single-crystal monolayer graphene on reusable hydrogen-terminated germanium. Science. 2014;344(6181):286-9doi: 10.1126/science.1252268.
Lee, J. H., Lee, E. K., Joo, W. J., Jang, Y., Kim, B. S., Lim, J. Y., Choi, S. H., Ahn, S. J., Ahn, J. R., Park, M. H., Yang, C. W., Choi, B. L., Hwang, S. W., & Whang, D. (2014). Wafer-scale growth of single-crystal monolayer graphene on reusable hydrogen-terminated germanium. Science (New York, N.Y.), 344(6181), 286-9. https://doi.org/10.1126/science.1252268
Lee, Jae-Hyun, et al. "Wafer-scale growth of single-crystal monolayer graphene on reusable hydrogen-terminated germanium." Science (New York, N.Y.) vol. 344,6181 (2014): 286-9. doi: https://doi.org/10.1126/science.1252268
Lee JH, Lee EK, Joo WJ, Jang Y, Kim BS, Lim JY, Choi SH, Ahn SJ, Ahn JR, Park MH, Yang CW, Choi BL, Hwang SW, Whang D. Wafer-scale growth of single-crystal monolayer graphene on reusable hydrogen-terminated germanium. Science. 2014 Apr 18;344(6181):286-9. doi: 10.1126/science.1252268. Epub 2014 Apr 03. PMID: 24700471.
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Prognostic factors for bronchoscopic intervention in advanced lung or esophageal cancer patients with malignant airway obstruction.

Annals of thoracic medicine

Song JU, Park HY, Kim H, Jeon K, Um SW, Koh WJ, Suh GY, Chung MP, Kwon OJ.
PMID: 23741270
Ann Thorac Med. 2013 Apr;8(2):86-92. doi: 10.4103/1817-1737.109818.

CONTEXT: Bronchoscopic intervention can provide immediate relief from suffocation and an opportunity for additional treatment in patients with malignant airway obstruction. However, few studies have specifically identified prognostic factors affecting the survival of advanced lung or esophageal cancer patients...

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Song JU, Park HY, Kim H, et al. Prognostic factors for bronchoscopic intervention in advanced lung or esophageal cancer patients with malignant airway obstruction. Ann Thorac Med. 2013;8(2):86-92doi: 10.4103/1817-1737.109818.
Song, J. U., Park, H. Y., Kim, H., Jeon, K., Um, S. W., Koh, W. J., Suh, G. Y., Chung, M. P., & Kwon, O. J. (2013). Prognostic factors for bronchoscopic intervention in advanced lung or esophageal cancer patients with malignant airway obstruction. Annals of thoracic medicine, 8(2), 86-92. https://doi.org/10.4103/1817-1737.109818
Song, Jae-Uk, et al. "Prognostic factors for bronchoscopic intervention in advanced lung or esophageal cancer patients with malignant airway obstruction." Annals of thoracic medicine vol. 8,2 (2013): 86-92. doi: https://doi.org/10.4103/1817-1737.109818
Song JU, Park HY, Kim H, Jeon K, Um SW, Koh WJ, Suh GY, Chung MP, Kwon OJ. Prognostic factors for bronchoscopic intervention in advanced lung or esophageal cancer patients with malignant airway obstruction. Ann Thorac Med. 2013 Apr;8(2):86-92. doi: 10.4103/1817-1737.109818. PMID: 23741270; PMCID: PMC3667451.
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Evaluating the Impact of Drug Dispensing Systems on the Safety and Efficacy in a Singapore Outpatient Pharmacy.

Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research

Ong YS, Chen LL, Wong JA, Gunawan Y, Goh WJ, Tan MC, Lee SB.
PMID: 27202953
Value Health. 2014 Nov;17(7):A791-2. doi: 10.1016/j.jval.2014.08.440. Epub 2014 Oct 26.

No abstract available.

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Ong YS, Chen LL, Wong JA, et al. Evaluating the Impact of Drug Dispensing Systems on the Safety and Efficacy in a Singapore Outpatient Pharmacy. Value Health. 2014;17(7):A791-2doi: 10.1016/j.jval.2014.08.440.
Ong, Y. S., Chen, L. L., Wong, J. A., Gunawan, Y., Goh, W. J., Tan, M. C., & Lee, S. B. (2014). Evaluating the Impact of Drug Dispensing Systems on the Safety and Efficacy in a Singapore Outpatient Pharmacy. Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research, 17(7), A791-2. https://doi.org/10.1016/j.jval.2014.08.440
Ong, Y S P, et al. "Evaluating the Impact of Drug Dispensing Systems on the Safety and Efficacy in a Singapore Outpatient Pharmacy." Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research vol. 17,7 (2014): A791-2. doi: https://doi.org/10.1016/j.jval.2014.08.440
Ong YS, Chen LL, Wong JA, Gunawan Y, Goh WJ, Tan MC, Lee SB. Evaluating the Impact of Drug Dispensing Systems on the Safety and Efficacy in a Singapore Outpatient Pharmacy. Value Health. 2014 Nov;17(7):A791-2. doi: 10.1016/j.jval.2014.08.440. Epub 2014 Oct 26. PMID: 27202953.
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Nontuberculous Mycobacterial Lung Disease Caused by Mycobacterium shinjukuense: The First Reported Case in Korea.

Tuberculosis and respiratory diseases

Moon SM, Kim SY, Chung MJ, Lee SH, Shin SJ, Koh WJ.
PMID: 26508936
Tuberc Respir Dis (Seoul). 2015 Oct;78(4):416-8. doi: 10.4046/trd.2015.78.4.416. Epub 2015 Oct 01.

Mycobacterium shinjukuense is a novel species of nontuberculous mycobacteria (NTM) that was first reported in Japan in 2011. It is a slow-growing NTM pathogen that can cause chronic pulmonary infections. There are only a few reported cases of M....

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Moon SM, Kim SY, Chung MJ, et al. Nontuberculous Mycobacterial Lung Disease Caused by Mycobacterium shinjukuense: The First Reported Case in Korea. Tuberc Respir Dis (Seoul). 2015;78(4):416-8doi: 10.4046/trd.2015.78.4.416.
Moon, S. M., Kim, S. Y., Chung, M. J., Lee, S. H., Shin, S. J., & Koh, W. J. (2015). Nontuberculous Mycobacterial Lung Disease Caused by Mycobacterium shinjukuense: The First Reported Case in Korea. Tuberculosis and respiratory diseases, 78(4), 416-8. https://doi.org/10.4046/trd.2015.78.4.416
Moon, Seong Mi, et al. "Nontuberculous Mycobacterial Lung Disease Caused by Mycobacterium shinjukuense: The First Reported Case in Korea." Tuberculosis and respiratory diseases vol. 78,4 (2015): 416-8. doi: https://doi.org/10.4046/trd.2015.78.4.416
Moon SM, Kim SY, Chung MJ, Lee SH, Shin SJ, Koh WJ. Nontuberculous Mycobacterial Lung Disease Caused by Mycobacterium shinjukuense: The First Reported Case in Korea. Tuberc Respir Dis (Seoul). 2015 Oct;78(4):416-8. doi: 10.4046/trd.2015.78.4.416. Epub 2015 Oct 01. PMID: 26508936; PMCID: PMC4620342.
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Towards refractive index sensitivity of long-period gratings at level of tens of µm per refractive index unit: fiber cladding etching and nano-coating deposition.

Optics express

Śmietana M, Koba M, Mikulic P, Bock WJ.
PMID: 27410112
Opt Express. 2016 May 30;24(11):11897-904. doi: 10.1364/OE.24.011897.

In this work we report experimental results on optimizing the refractive index (RI) sensitivity of long-period gratings (LPGs) by fiber cladding etching and thin aluminum oxide (Al2O3) overlay deposition. The presented LPG takes advantage of work in the dispersion...

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Śmietana M, Koba M, Mikulic P, et al. Towards refractive index sensitivity of long-period gratings at level of tens of µm per refractive index unit: fiber cladding etching and nano-coating deposition. Opt Express. 2016;24(11):11897-904doi: 10.1364/OE.24.011897.
Śmietana, M., Koba, M., Mikulic, P., & Bock, W. J. (2016). Towards refractive index sensitivity of long-period gratings at level of tens of µm per refractive index unit: fiber cladding etching and nano-coating deposition. Optics express, 24(11), 11897-904. https://doi.org/10.1364/OE.24.011897
Śmietana, Mateusz, et al. "Towards refractive index sensitivity of long-period gratings at level of tens of µm per refractive index unit: fiber cladding etching and nano-coating deposition." Optics express vol. 24,11 (2016): 11897-904. doi: https://doi.org/10.1364/OE.24.011897
Śmietana M, Koba M, Mikulic P, Bock WJ. Towards refractive index sensitivity of long-period gratings at level of tens of µm per refractive index unit: fiber cladding etching and nano-coating deposition. Opt Express. 2016 May 30;24(11):11897-904. doi: 10.1364/OE.24.011897. PMID: 27410112.
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Diagnosis of pulmonary tuberculosis and nontuberculous mycobacterial lung disease in Korea.

Tuberculosis and respiratory diseases

Kwon YS, Koh WJ.
PMID: 25114696
Tuberc Respir Dis (Seoul). 2014 Jul;77(1):1-5. doi: 10.4046/trd.2014.77.1.1. Epub 2014 Jul 31.

The recovery of nontuberculous mycobacteria (NTM) from respiratory specimens and the number of patients with NTM lung disease have been rapidly increasing in Korea. An early differential diagnosis of NTM lung disease from pulmonary tuberculosis (TB) is important, as...

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Kwon YS, Koh WJ. Diagnosis of pulmonary tuberculosis and nontuberculous mycobacterial lung disease in Korea. Tuberc Respir Dis (Seoul). 2014;77(1):1-5doi: 10.4046/trd.2014.77.1.1.
Kwon, Y. S., & Koh, W. J. (2014). Diagnosis of pulmonary tuberculosis and nontuberculous mycobacterial lung disease in Korea. Tuberculosis and respiratory diseases, 77(1), 1-5. https://doi.org/10.4046/trd.2014.77.1.1
Kwon, Yong Soo, and Koh, Won-Jung. "Diagnosis of pulmonary tuberculosis and nontuberculous mycobacterial lung disease in Korea." Tuberculosis and respiratory diseases vol. 77,1 (2014): 1-5. doi: https://doi.org/10.4046/trd.2014.77.1.1
Kwon YS, Koh WJ. Diagnosis of pulmonary tuberculosis and nontuberculous mycobacterial lung disease in Korea. Tuberc Respir Dis (Seoul). 2014 Jul;77(1):1-5. doi: 10.4046/trd.2014.77.1.1. Epub 2014 Jul 31. PMID: 25114696; PMCID: PMC4127406.
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Proton NMR Study of Oxo-Bridged Dimanganese(III) Complexes: Solution State Structures and an Isotropic Shift/Magnetic Exchange Correlation.

Inorganic chemistry

Wright DW, Mok HJ, Dubé CE, Armstrong WH.
PMID: 11670470
Inorg Chem. 1998 Jul 27;37(15):3714-3718. doi: 10.1021/ic960646l.

The (1)H NMR spectra of a series of manganese-oxo aggregates have been examined, and a characteristic signature was found for each complex. For the dimanganese(III,III) complexes [Mn(2)O(OAc)(2)(HB(pz)(3))(2)], [Mn(2)O(OAc)(2)(tacn)(2)](2+), [Mn(2)O(OAc)(2)(H(2)O)(2)(bpy)(2)](2+), and [Mn(2)O(OAc)(2)(bpta)(2)](2+) (HB(pz)(3) = hydrotris(pyrazol-1-yl)borate; tacn = 1,4,7-triazacyclononane; bpy =...

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Wright DW, Mok HJ, Dubé CE, et al. Proton NMR Study of Oxo-Bridged Dimanganese(III) Complexes: Solution State Structures and an Isotropic Shift/Magnetic Exchange Correlation. Inorg Chem. 1998;37(15):3714-3718doi: 10.1021/ic960646l.
Wright, D. W., Mok, H. J., Dubé, C. E., & Armstrong, W. H. (1998). Proton NMR Study of Oxo-Bridged Dimanganese(III) Complexes: Solution State Structures and an Isotropic Shift/Magnetic Exchange Correlation. Inorganic chemistry, 37(15), 3714-3718. https://doi.org/10.1021/ic960646l
Wright, David W., et al. "Proton NMR Study of Oxo-Bridged Dimanganese(III) Complexes: Solution State Structures and an Isotropic Shift/Magnetic Exchange Correlation." Inorganic chemistry vol. 37,15 (1998): 3714-3718. doi: https://doi.org/10.1021/ic960646l
Wright DW, Mok HJ, Dubé CE, Armstrong WH. Proton NMR Study of Oxo-Bridged Dimanganese(III) Complexes: Solution State Structures and an Isotropic Shift/Magnetic Exchange Correlation. Inorg Chem. 1998 Jul 27;37(15):3714-3718. doi: 10.1021/ic960646l. PMID: 11670470.
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