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Revealing Nature's Cellulase Diversity: The Digestion Mechanism of Caldicellulosiruptor bescii CelA

diversity

Brunecky R, Alahuhta M, Xu Q, Donohoe BS.
GSID: IieGVQ6oYn8J
R Brunecky, M Alahuhta, Q Xu, BS Donohoe… - Science, 2013 - science.org

Most fungi and bacteria degrade plant cell walls by secreting free, complementary enzymes that hydrolyze cellulose; however, some bacteria use large enzymatic assemblies called cellulosomes, which recruit complementary enzymes to protein scaffolds. The thermophilic …

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Brunecky, R., Alahuhta, M., Xu, Q., Donohoe, B. S., Crowley, M. F., Kataeva, I. A., ... & Bomble, Y. J. (2013). Revealing nature’s cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA. Science, 342(6165), 1513-1516.
Brunecky, Roman, et al. "Revealing nature’s cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA." Science 342.6165 (2013): 1513-1516.
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Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract.

SpringerPlus

de Alencar Guimaraes NC, Sorgatto M, Peixoto-Nogueira Sde C, Betini JH, Zanoelo FF, Marques MR, de Moraes Polizeli Mde L, Giannesi GC.
PMID: 24010038
Springerplus. 2013 Aug 13;2:380. doi: 10.1186/2193-1801-2-380. eCollection 2013.

This study compares two xylanases produced by filamentous fungi such as A. niger and A. flavus using agroindustrial residues as substract and evaluated the effect of these enzymes on cellulose pulp biobleaching process. Wheat bran was the best carbon...

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de Alencar Guimaraes NC, Sorgatto M, Peixoto-Nogueira Sde C, et al. Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract. Springerplus. 2013;2:380doi: 10.1186/2193-1801-2-380.
de Alencar Guimaraes, N. C., Sorgatto, M., Peixoto-Nogueira, S. d. e. . C., Betini, J. H., Zanoelo, F. F., Marques, M. R., de Moraes Polizeli, M. d. e. . L., & Giannesi, G. C. (2013). Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract. SpringerPlus, 2380. https://doi.org/10.1186/2193-1801-2-380
de Alencar Guimaraes, Nelciele Cavalieri, et al. "Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract." SpringerPlus vol. 2 (2013): 380. doi: https://doi.org/10.1186/2193-1801-2-380
de Alencar Guimaraes NC, Sorgatto M, Peixoto-Nogueira Sde C, Betini JH, Zanoelo FF, Marques MR, de Moraes Polizeli Mde L, Giannesi GC. Bioprocess and biotecnology: effect of xylanase from Aspergillus niger and Aspergillus flavus on pulp biobleaching and enzyme production using agroindustrial residues as substract. Springerplus. 2013 Aug 13;2:380. doi: 10.1186/2193-1801-2-380. eCollection 2013. PMID: 24010038; PMCID: PMC3755788.
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Genome sequencing and transcriptome analysis of .

Biotechnology for biofuels

Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F.
PMID: 28912831
Biotechnol Biofuels. 2017 Sep 07;10:209. doi: 10.1186/s13068-017-0897-7. eCollection 2017.

BACKGROUND: The hydrolysis of biomass to simple sugars used for the production of biofuels in biorefineries requires the action of cellulolytic enzyme mixtures. During the last 50 years, the ascomycete RESULTS: Sequence comparison of the cellulase-negative strain QM9978 to...

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Ivanova C, Ramoni J, Aouam T, et al. Genome sequencing and transcriptome analysis of . Biotechnol Biofuels. 2017;10:209doi: 10.1186/s13068-017-0897-7.
Ivanova, C., Ramoni, J., Aouam, T., Frischmann, A., Seiboth, B., Baker, S. E., Le Crom, S., Lemoine, S., Margeot, A., & Bidard, F. (2017). Genome sequencing and transcriptome analysis of . Biotechnology for biofuels, 10209. https://doi.org/10.1186/s13068-017-0897-7
Ivanova, Christa, et al. "Genome sequencing and transcriptome analysis of ." Biotechnology for biofuels vol. 10 (2017): 209. doi: https://doi.org/10.1186/s13068-017-0897-7
Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F. Genome sequencing and transcriptome analysis of . Biotechnol Biofuels. 2017 Sep 07;10:209. doi: 10.1186/s13068-017-0897-7. eCollection 2017. PMID: 28912831; PMCID: PMC5588705.
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Single cell oil production by .

Biotechnology for biofuels

Zhao C, Fang H, Chen S.
PMID: 28852423
Biotechnol Biofuels. 2017 Aug 23;10:202. doi: 10.1186/s13068-017-0889-7. eCollection 2017.

BACKGROUND: Single cell oil (SCO) production from lignocelluloses by oleaginous microorganisms is still high in production cost, making the subsequent production of biofuels inviable economically in such an era of low oil prices. Therefore, how to upgrade the final...

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Zhao C, Fang H, Chen S. Single cell oil production by . Biotechnol Biofuels. 2017;10:202doi: 10.1186/s13068-017-0889-7.
Zhao, C., Fang, H., & Chen, S. (2017). Single cell oil production by . Biotechnology for biofuels, 10202. https://doi.org/10.1186/s13068-017-0889-7
Zhao, Chen, et al. "Single cell oil production by ." Biotechnology for biofuels vol. 10 (2017): 202. doi: https://doi.org/10.1186/s13068-017-0889-7
Zhao C, Fang H, Chen S. Single cell oil production by . Biotechnol Biofuels. 2017 Aug 23;10:202. doi: 10.1186/s13068-017-0889-7. eCollection 2017. PMID: 28852423; PMCID: PMC5568358.
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Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions.

Biotechnology for biofuels

Santos CA, Zanphorlin LM, Crucello A, Tonoli CCC, Ruller R, Horta MAC, Murakami MT, de Souza AP.
PMID: 27006690
Biotechnol Biofuels. 2016 Mar 22;9:71. doi: 10.1186/s13068-016-0487-0. eCollection 2016.

BACKGROUND: The conversion of biomass-derived sugars via enzymatic hydrolysis for biofuel production is a challenge. Therefore, the search for microorganisms and key enzymes that increase the efficiency of the saccharification of cellulosic substrates remains an important and high-priority area...

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Santos CA, Zanphorlin LM, Crucello A, et al. Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions. Biotechnol Biofuels. 2016;9:71doi: 10.1186/s13068-016-0487-0.
Santos, C. A., Zanphorlin, L. M., Crucello, A., Tonoli, C. C. C., Ruller, R., Horta, M. A. C., Murakami, M. T., & de Souza, A. P. (2016). Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions. Biotechnology for biofuels, 971. https://doi.org/10.1186/s13068-016-0487-0
Santos, Clelton A, et al. "Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions." Biotechnology for biofuels vol. 9 (2016): 71. doi: https://doi.org/10.1186/s13068-016-0487-0
Santos CA, Zanphorlin LM, Crucello A, Tonoli CCC, Ruller R, Horta MAC, Murakami MT, de Souza AP. Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions. Biotechnol Biofuels. 2016 Mar 22;9:71. doi: 10.1186/s13068-016-0487-0. eCollection 2016. PMID: 27006690; PMCID: PMC4802607.
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Process relevant screening of cellulolytic organisms for consolidated bioprocessing.

Biotechnology for biofuels

Antonov E, Schlembach I, Regestein L, Rosenbaum MA, Büchs J.
PMID: 28450887
Biotechnol Biofuels. 2017 Apr 24;10:106. doi: 10.1186/s13068-017-0790-4. eCollection 2017.

BACKGROUND: Although the biocatalytic conversion of cellulosic biomass could replace fossil oil for the production of various compounds, it is often not economically viable due to the high costs of cellulolytic enzymes. One possibility to reduce costs is consolidated...

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Antonov E, Schlembach I, Regestein L, et al. Process relevant screening of cellulolytic organisms for consolidated bioprocessing. Biotechnol Biofuels. 2017;10:106doi: 10.1186/s13068-017-0790-4.
Antonov, E., Schlembach, I., Regestein, L., Rosenbaum, M. A., & Büchs, J. (2017). Process relevant screening of cellulolytic organisms for consolidated bioprocessing. Biotechnology for biofuels, 10106. https://doi.org/10.1186/s13068-017-0790-4
Antonov, Elena, et al. "Process relevant screening of cellulolytic organisms for consolidated bioprocessing." Biotechnology for biofuels vol. 10 (2017): 106. doi: https://doi.org/10.1186/s13068-017-0790-4
Antonov E, Schlembach I, Regestein L, Rosenbaum MA, Büchs J. Process relevant screening of cellulolytic organisms for consolidated bioprocessing. Biotechnol Biofuels. 2017 Apr 24;10:106. doi: 10.1186/s13068-017-0790-4. eCollection 2017. PMID: 28450887; PMCID: PMC5402656.
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Characterization of Yuhushiella sp. TD-032 from the Thar Desert and its antimicrobial activity.

Journal of advanced pharmaceutical technology & research

Ibeyaima A, Rana J, Dwivedi A, Gupta S, Sharma SK, Saini N, Sarethy IP.
PMID: 27144149
J Adv Pharm Technol Res. 2016 Apr-Jun;7(2):32-6. doi: 10.4103/2231-4040.177201.

During a screening program for antimicrobial compounds from underexplored habitats, a Gram-positive bacterium TD-032, was isolated from arid soil, Thar Desert (India), and analyzed for its morphological, physicochemical, and antimicrobial properties. The 16S ribosomal DNA (rDNA) sequence of the...

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Ibeyaima A, Rana J, Dwivedi A, et al. Characterization of Yuhushiella sp. TD-032 from the Thar Desert and its antimicrobial activity. J Adv Pharm Technol Res. 2016;7(2):32-6doi: 10.4103/2231-4040.177201.
Ibeyaima, A., Rana, J., Dwivedi, A., Gupta, S., Sharma, S. K., Saini, N., & Sarethy, I. P. (2016). Characterization of Yuhushiella sp. TD-032 from the Thar Desert and its antimicrobial activity. Journal of advanced pharmaceutical technology & research, 7(2), 32-6. https://doi.org/10.4103/2231-4040.177201
Ibeyaima, A, et al. "Characterization of Yuhushiella sp. TD-032 from the Thar Desert and its antimicrobial activity." Journal of advanced pharmaceutical technology & research vol. 7,2 (2016): 32-6. doi: https://doi.org/10.4103/2231-4040.177201
Ibeyaima A, Rana J, Dwivedi A, Gupta S, Sharma SK, Saini N, Sarethy IP. Characterization of Yuhushiella sp. TD-032 from the Thar Desert and its antimicrobial activity. J Adv Pharm Technol Res. 2016 Apr-Jun;7(2):32-6. doi: 10.4103/2231-4040.177201. PMID: 27144149; PMCID: PMC4850765.
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The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images.

AMB Express

Hidayat BJ, Weisskopf C, Felby C, Johansen KS, Thygesen LG.
PMID: 26626331
AMB Express. 2015 Dec;5(1):76. doi: 10.1186/s13568-015-0165-9. Epub 2015 Dec 01.

Binding of enzymes to the substrate is the first step in enzymatic hydrolysis of lignocellulose, a key process within biorefining. During this process elongated plant cells such as fibers and tracheids have been found to break into segments at...

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Hidayat BJ, Weisskopf C, Felby C, et al. The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images. AMB Express. 2015;5(1):76doi: 10.1186/s13568-015-0165-9.
Hidayat, B. J., Weisskopf, C., Felby, C., Johansen, K. S., & Thygesen, L. G. (2015). The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images. AMB Express, 5(1), 76. https://doi.org/10.1186/s13568-015-0165-9
Hidayat, Budi J, et al. "The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images." AMB Express vol. 5,1 (2015): 76. doi: https://doi.org/10.1186/s13568-015-0165-9
Hidayat BJ, Weisskopf C, Felby C, Johansen KS, Thygesen LG. The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images. AMB Express. 2015 Dec;5(1):76. doi: 10.1186/s13568-015-0165-9. Epub 2015 Dec 01. PMID: 26626331; PMCID: PMC4666858.
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Mechanism of lignin inhibition of enzymatic biomass deconstruction.

Biotechnology for biofuels

Vermaas JV, Petridis L, Qi X, Schulz R, Lindner B, Smith JC.
PMID: 26697106
Biotechnol Biofuels. 2015 Dec 21;8:217. doi: 10.1186/s13068-015-0379-8. eCollection 2015.

BACKGROUND: The conversion of plant biomass to ethanol via enzymatic cellulose hydrolysis offers a potentially sustainable route to biofuel production. However, the inhibition of enzymatic activity in pretreated biomass by lignin severely limits the efficiency of this process.RESULTS: By...

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Vermaas JV, Petridis L, Qi X, et al. Mechanism of lignin inhibition of enzymatic biomass deconstruction. Biotechnol Biofuels. 2015;8:217doi: 10.1186/s13068-015-0379-8.
Vermaas, J. V., Petridis, L., Qi, X., Schulz, R., Lindner, B., & Smith, J. C. (2015). Mechanism of lignin inhibition of enzymatic biomass deconstruction. Biotechnology for biofuels, 8217. https://doi.org/10.1186/s13068-015-0379-8
Vermaas, Josh V, et al. "Mechanism of lignin inhibition of enzymatic biomass deconstruction." Biotechnology for biofuels vol. 8 (2015): 217. doi: https://doi.org/10.1186/s13068-015-0379-8
Vermaas JV, Petridis L, Qi X, Schulz R, Lindner B, Smith JC. Mechanism of lignin inhibition of enzymatic biomass deconstruction. Biotechnol Biofuels. 2015 Dec 21;8:217. doi: 10.1186/s13068-015-0379-8. eCollection 2015. PMID: 26697106; PMCID: PMC4687093.
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Evaluation of wild herbivore faeces from South Africa as a potential source of hydrolytically active microorganisms.

SpringerPlus

Ndlela LL, Schmidt S.
PMID: 26900540
Springerplus. 2016 Feb 09;5:118. doi: 10.1186/s40064-016-1739-y. eCollection 2016.

This study assessed faecal matter from three indigenous South African herbivores-zebra, giraffe and impala-as a potential source for hydrolytically active aerobic and facultatively anaerobic bacteria. Herbivore droppings were collected freshly in a local nature reserve in Pietermaritzburg, South Africa....

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Ndlela LL, Schmidt S. Evaluation of wild herbivore faeces from South Africa as a potential source of hydrolytically active microorganisms. Springerplus. 2016;5:118doi: 10.1186/s40064-016-1739-y.
Ndlela, L. L., & Schmidt, S. (2016). Evaluation of wild herbivore faeces from South Africa as a potential source of hydrolytically active microorganisms. SpringerPlus, 5118. https://doi.org/10.1186/s40064-016-1739-y
Ndlela, Luyanda L, and Schmidt, Stefan. "Evaluation of wild herbivore faeces from South Africa as a potential source of hydrolytically active microorganisms." SpringerPlus vol. 5 (2016): 118. doi: https://doi.org/10.1186/s40064-016-1739-y
Ndlela LL, Schmidt S. Evaluation of wild herbivore faeces from South Africa as a potential source of hydrolytically active microorganisms. Springerplus. 2016 Feb 09;5:118. doi: 10.1186/s40064-016-1739-y. eCollection 2016. PMID: 26900540; PMCID: PMC4746204.
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Phylogenetic and metabolic diversity of Tunisian forest wood-degrading fungi: a wealth of novelties and opportunities for biotechnology.

3 Biotech

Daâssi D, Zouari-Mechichi H, Belbahri L, Barriuso J, Martínez MJ, Nasri M, Mechichi T.
PMID: 28330115
3 Biotech. 2016 Jun;6(1):46. doi: 10.1007/s13205-015-0356-8. Epub 2016 Feb 04.

In this study, 51 fungal strains were isolated from decaying wood samples collected from forests located in the Northwest of Tunisia in the vicinity of Bousalem, Ain Draham and Kef. Phylogenetic analysis based on the sequences of the internal...

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Daâssi D, Zouari-Mechichi H, Belbahri L, et al. Phylogenetic and metabolic diversity of Tunisian forest wood-degrading fungi: a wealth of novelties and opportunities for biotechnology. 3 Biotech. 2016;6(1):46doi: 10.1007/s13205-015-0356-8.
Daâssi, D., Zouari-Mechichi, H., Belbahri, L., Barriuso, J., Martínez, M. J., Nasri, M., & Mechichi, T. (2016). Phylogenetic and metabolic diversity of Tunisian forest wood-degrading fungi: a wealth of novelties and opportunities for biotechnology. 3 Biotech, 6(1), 46. https://doi.org/10.1007/s13205-015-0356-8
Daâssi, Dalel, et al. "Phylogenetic and metabolic diversity of Tunisian forest wood-degrading fungi: a wealth of novelties and opportunities for biotechnology." 3 Biotech vol. 6,1 (2016): 46. doi: https://doi.org/10.1007/s13205-015-0356-8
Daâssi D, Zouari-Mechichi H, Belbahri L, Barriuso J, Martínez MJ, Nasri M, Mechichi T. Phylogenetic and metabolic diversity of Tunisian forest wood-degrading fungi: a wealth of novelties and opportunities for biotechnology. 3 Biotech. 2016 Jun;6(1):46. doi: 10.1007/s13205-015-0356-8. Epub 2016 Feb 04. PMID: 28330115; PMCID: PMC4742418.
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Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes.

Biotechnology for biofuels

Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O'Donohue MJ.
PMID: 26244054
Biotechnol Biofuels. 2015 Aug 04;8:109. doi: 10.1186/s13068-015-0289-9. eCollection 2015.

BACKGROUND: Yarrowia lipolytica, one of the most widely studied "nonconventional" oleaginous yeast species, is unable to grow on cellobiose. Engineering cellobiose-degrading ability into this yeast is a vital step towards the development of cellulolytic biocatalysts suitable for consolidated bioprocessing.RESULTS:...

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Guo Z, Duquesne S, Bozonnet S, et al. Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes. Biotechnol Biofuels. 2015;8:109doi: 10.1186/s13068-015-0289-9.
Guo, Z., Duquesne, S., Bozonnet, S., Cioci, G., Nicaud, J. M., Marty, A., & O'Donohue, M. J. (2015). Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes. Biotechnology for biofuels, 8109. https://doi.org/10.1186/s13068-015-0289-9
Guo, Zhongpeng, et al. "Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes." Biotechnology for biofuels vol. 8 (2015): 109. doi: https://doi.org/10.1186/s13068-015-0289-9
Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O'Donohue MJ. Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes. Biotechnol Biofuels. 2015 Aug 04;8:109. doi: 10.1186/s13068-015-0289-9. eCollection 2015. PMID: 26244054; PMCID: PMC4524412.
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Showing 1 to 12 of 2066 entries